RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 BRK1Q8WUW1 75 aa5.72□□□□□ -1.49
USP4-202ENST00000351842 ANAPC11Q9NYG5 84 aa5.72□□□□□ -1.49
USP4-202ENST00000351842 IGLV1-50A0A075B6I6 118 aa5.72□□□□□ -1.49
USP4-202ENST00000351842 HIST1H4AP62805 103 aaKnown RBP5.72□□□□□ -1.49
USP4-202ENST00000351842 DIRC1Q969H9 104 aa5.72□□□□□ -1.49
USP4-202ENST00000351842 PLAC8Q9NZF1 115 aa5.72□□□□□ -1.49
USP4-202ENST00000351842 NDUFC2O95298 119 aa5.72□□□□□ -1.49
USP4-202ENST00000351842 H0YGX0 51 aa5.71□□□□□ -1.5
USP4-202ENST00000351842 IGLV6-57P01721 117 aa5.7□□□□□ -1.5
USP4-202ENST00000351842 Q6ZSA8 131 aa5.7□□□□□ -1.5
USP4-202ENST00000351842 HSPG2P98160 4391 aa5.7□□□□□ -1.5
USP4-202ENST00000351842 BAALC-AS2P0C853 105 aa5.7□□□□□ -1.5
USP4-202ENST00000351842 MYCBP2O75592 4640 aa5.7□□□□□ -1.5
USP4-202ENST00000351842 RYR1P21817 5038 aa5.69□□□□□ -1.5
USP4-202ENST00000351842 EPM2AB3EWF7 344 aa5.69□□□□□ -1.5
USP4-202ENST00000351842 INAFM2P0DMQ5 153 aa5.69□□□□□ -1.5
USP4-202ENST00000351842 ST20-AS1Q8NBB2 130 aa5.69□□□□□ -1.5
USP4-202ENST00000351842 ERC2-IT1O76042 136 aa5.69□□□□□ -1.5
USP4-202ENST00000351842 COX7BP24311 80 aa5.69□□□□□ -1.5
USP4-202ENST00000351842 RPL37AP61513 92 aaKnown RBP5.69□□□□□ -1.5
USP4-202ENST00000351842 SERP1Q9Y6X1 66 aa5.67□□□□□ -1.5
USP4-202ENST00000351842 Q5VSD8 79 aa5.67□□□□□ -1.5
USP4-202ENST00000351842 DNAL4O96015 105 aa5.66□□□□□ -1.5
USP4-202ENST00000351842 Q6ZQY7 126 aa5.66□□□□□ -1.5
USP4-202ENST00000351842 KCNQ1DNQ9H478 68 aa5.66□□□□□ -1.5
USP4-202ENST00000351842 PLA2G2DQ9UNK4 145 aa5.66□□□□□ -1.5
USP4-202ENST00000351842 FAM229AH3BQW9 127 aa5.66□□□□□ -1.5
USP4-202ENST00000351842 FP248Q71RG6 208 aaPredicted RBP5.65□□□□□ -1.5
USP4-202ENST00000351842 Q9BRP9 147 aa5.65□□□□□ -1.5
USP4-202ENST00000351842 SMIM26A0A096LP01 95 aa5.65□□□□□ -1.51
USP4-202ENST00000351842 KRTAP17-1Q9BYP8 105 aa5.65□□□□□ -1.51
USP4-202ENST00000351842 A0A087WVE0 104 aa5.65□□□□□ -1.51
USP4-202ENST00000351842 BCE1O60756 84 aa5.65□□□□□ -1.51
USP4-202ENST00000351842 LRP1Q07954 4544 aaKnown RBP5.65□□□□□ -1.51
USP4-202ENST00000351842 IGLV5-37A0A075B6J1 123 aa5.64□□□□□ -1.51
USP4-202ENST00000351842 IGKV3D-7A0A0C4DH55 119 aa5.64□□□□□ -1.51
USP4-202ENST00000351842 PRYO14603 147 aa5.64□□□□□ -1.51
USP4-202ENST00000351842 Q6ZRX8 168 aa5.64□□□□□ -1.51
USP4-202ENST00000351842 BIRC6Q9NR09 4857 aa5.64□□□□□ -1.51
USP4-202ENST00000351842 A0A0G2JQZ4 141 aa5.63□□□□□ -1.51
USP4-202ENST00000351842 IGLV7-43P04211 117 aa5.63□□□□□ -1.51
USP4-202ENST00000351842 PMAIP1Q13794 54 aa5.63□□□□□ -1.51
USP4-202ENST00000351842 IGLV9-49A0A0B4J1Y8 123 aa5.63□□□□□ -1.51
USP4-202ENST00000351842 KRTAP4-5Q9BYR2 181 aa5.63□□□□□ -1.51
USP4-202ENST00000351842 ELOF1P60002 83 aaKnown RBP5.62□□□□□ -1.51
USP4-202ENST00000351842 C20orf197Q8N268 126 aa5.62□□□□□ -1.51
USP4-202ENST00000351842 Q6JHZ5 121 aa5.61□□□□□ -1.51
USP4-202ENST00000351842 ZNF861PO60384 105 aa5.6□□□□□ -1.51
USP4-202ENST00000351842 LINC00575Q6W349 94 aa5.6□□□□□ -1.51
USP4-202ENST00000351842 LAMTOR3Q9UHA4 124 aa5.6□□□□□ -1.51
USP4-202ENST00000351842 ABCA13Q86UQ4 5058 aa5.59□□□□□ -1.51
USP4-202ENST00000351842 ORMDL1Q9P0S3 153 aa5.59□□□□□ -1.51
USP4-202ENST00000351842 KRTAP4-16G5E9R7 235 aaPredicted RBP5.59□□□□□ -1.52
USP4-202ENST00000351842 CDK2AP2O75956 126 aa5.59□□□□□ -1.52
USP4-202ENST00000351842 GHRHP01286 108 aa5.59□□□□□ -1.52
USP4-202ENST00000351842 CCKP06307 115 aa5.59□□□□□ -1.52
USP4-202ENST00000351842 JMJD7-PLA2G4BH0Y9G9 81 aa5.58□□□□□ -1.52
USP4-202ENST00000351842 PLA2G1BP04054 148 aaKnown RBP5.58□□□□□ -1.52
USP4-202ENST00000351842 HERC2O95714 4834 aa5.58□□□□□ -1.52
USP4-202ENST00000351842 SPRR1AP35321 89 aa5.58□□□□□ -1.52
USP4-202ENST00000351842 H7BZZ5 65 aa5.57□□□□□ -1.52
USP4-202ENST00000351842 CD164Q04900 197 aa5.57□□□□□ -1.52
USP4-202ENST00000351842 C4orf48Q5BLP8 95 aa5.57□□□□□ -1.52
USP4-202ENST00000351842 LINC00846Q9NV44 126 aa5.57□□□□□ -1.52
USP4-202ENST00000351842 TMEM256-PLSCR3K7ERE1 68 aa5.57□□□□□ -1.52
USP4-202ENST00000351842 RBM3P98179 157 aaKnown RBP5.57□□□□□ -1.52
USP4-202ENST00000351842 C14orf132Q9NPU4 83 aa5.57□□□□□ -1.52
USP4-202ENST00000351842 DHRS4-AS1Q9P1J3 65 aa5.56□□□□□ -1.52
USP4-202ENST00000351842 H3BQ85 93 aa5.56□□□□□ -1.52
USP4-202ENST00000351842 PRR26Q8N8Z3 221 aa5.55□□□□□ -1.52
USP4-202ENST00000351842 LOC110117498A0A087WWA1 95 aa5.55□□□□□ -1.52
USP4-202ENST00000351842 TRBV7-6A0A0J9YX20 115 aa5.55□□□□□ -1.52
USP4-202ENST00000351842 ATP5EP2Q5VTU8 51 aa5.55□□□□□ -1.52
USP4-202ENST00000351842 MPLKIPQ8TAP9 179 aa5.55□□□□□ -1.52
USP4-202ENST00000351842 Q8N1X5 172 aa5.55□□□□□ -1.52
USP4-202ENST00000351842 MOBPQ13875 183 aa5.54□□□□□ -1.52
USP4-202ENST00000351842 A0A087X002 238 aa5.54□□□□□ -1.52
USP4-202ENST00000351842 Q8N377 158 aa5.53□□□□□ -1.52
USP4-202ENST00000351842 H0Y9J4 135 aa5.53□□□□□ -1.52
USP4-202ENST00000351842 KRTAP13-1Q8IUC0 172 aa5.53□□□□□ -1.52
USP4-202ENST00000351842 PCLOQ9Y6V0 5065 aa5.53□□□□□ -1.52
USP4-202ENST00000351842 F8WEM9 126 aa5.52□□□□□ -1.53
USP4-202ENST00000351842 SPRR4Q96PI1 79 aa5.52□□□□□ -1.53
USP4-202ENST00000351842 Q6ZQT0 140 aa5.51□□□□□ -1.53
USP4-202ENST00000351842 SNURFQ9Y675 71 aa5.51□□□□□ -1.53
USP4-202ENST00000351842 PRR15Q8IV56 129 aa5.5□□□□□ -1.53
USP4-202ENST00000351842 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.5□□□□□ -1.53
USP4-202ENST00000351842 FAT3Q8TDW7 4589 aa5.49□□□□□ -1.53
USP4-202ENST00000351842 PDE6GP18545 87 aa5.49□□□□□ -1.53
USP4-202ENST00000351842 KRTAP10-4P60372 401 aaPredicted RBP5.49□□□□□ -1.53
USP4-202ENST00000351842 SPINK6Q6UWN8 80 aa5.49□□□□□ -1.53
USP4-202ENST00000351842 KLKP1Q107X0 134 aa5.48□□□□□ -1.53
USP4-202ENST00000351842 FAM229BQ4G0N7 80 aa5.48□□□□□ -1.53
USP4-202ENST00000351842 LINC01547P58512 204 aaPredicted RBP5.48□□□□□ -1.53
USP4-202ENST00000351842 TYMSOSQ8TAI1 123 aa5.48□□□□□ -1.53
USP4-202ENST00000351842 ZNF706Q9Y5V0 76 aaPredicted RBP5.48□□□□□ -1.53
USP4-202ENST00000351842 TRAV7A0A075B6U4 112 aa5.47□□□□□ -1.53
USP4-202ENST00000351842 TRBV7-4A0A0J9YYF1 115 aa5.47□□□□□ -1.53
USP4-202ENST00000351842 KRTAP1-4P0C5Y4 121 aa5.46□□□□□ -1.54
USP4-202ENST00000351842 KRTAP13-2Q52LG2 175 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms