RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 DNAH5Q8TE73 4624 aa13.83□□□□□ -0.2
PDLIM2-203ENST00000339162 FAT2Q9NYQ8 4349 aa13.83□□□□□ -0.2
PDLIM2-203ENST00000339162 FAM30AQ9NZY2 134 aa13.82□□□□□ -0.2
PDLIM2-203ENST00000339162 KRTAP13-1Q8IUC0 172 aa13.8□□□□□ -0.2
PDLIM2-203ENST00000339162 UBL5Q9BZL1 73 aa13.8□□□□□ -0.2
PDLIM2-203ENST00000339162 PSORS1C2Q9UIG4 136 aa13.8□□□□□ -0.2
PDLIM2-203ENST00000339162 ATOX1O00244 68 aa13.8□□□□□ -0.2
PDLIM2-203ENST00000339162 SMIM20Q8N5G0 67 aa13.8□□□□□ -0.2
PDLIM2-203ENST00000339162 C1orf137Q5JT78 98 aa13.79□□□□□ -0.2
PDLIM2-203ENST00000339162 PKD1P98161 4303 aa13.79□□□□□ -0.2
PDLIM2-203ENST00000339162 C9orf153Q5TBE3 101 aa13.78□□□□□ -0.2
PDLIM2-203ENST00000339162 SACSQ9NZJ4 4579 aa13.78□□□□□ -0.2
PDLIM2-203ENST00000339162 A0A0G2JQZ4 141 aa13.78□□□□□ -0.2
PDLIM2-203ENST00000339162 COX7CP15954 63 aa13.78□□□□□ -0.2
PDLIM2-203ENST00000339162 HAMPP81172 84 aa13.76□□□□□ -0.21
PDLIM2-203ENST00000339162 Q6ZVQ6 151 aa13.75□□□□□ -0.21
PDLIM2-203ENST00000339162 KRTAP10-1P60331 282 aa13.74□□□□□ -0.21
PDLIM2-203ENST00000339162 A0A1W2PNM2 257 aa13.74□□□□□ -0.21
PDLIM2-203ENST00000339162 F8WEM9 126 aa13.74□□□□□ -0.21
PDLIM2-203ENST00000339162 CIRBP-AS1Q8TBR5 109 aa13.74□□□□□ -0.21
PDLIM2-203ENST00000339162 CRYGAP11844 174 aa13.7□□□□□ -0.22
PDLIM2-203ENST00000339162 LCE6AA0A183 80 aa13.69□□□□□ -0.22
PDLIM2-203ENST00000339162 ATP5EP2Q5VTU8 51 aa13.69□□□□□ -0.22
PDLIM2-203ENST00000339162 A0A087WVE0 104 aa13.68□□□□□ -0.22
PDLIM2-203ENST00000339162 SCXQ7RTU7 201 aa13.68□□□□□ -0.22
PDLIM2-203ENST00000339162 IGFL1Q6UW32 110 aa13.67□□□□□ -0.22
PDLIM2-203ENST00000339162 SPRR1BP22528 89 aa13.67□□□□□ -0.22
PDLIM2-203ENST00000339162 Q8NBF4 154 aa13.66□□□□□ -0.22
PDLIM2-203ENST00000339162 SERP2Q8N6R1 65 aa13.65□□□□□ -0.22
PDLIM2-203ENST00000339162 Q6ZSA8 131 aa13.63□□□□□ -0.23
PDLIM2-203ENST00000339162 ZNF861PO60384 105 aa13.63□□□□□ -0.23
PDLIM2-203ENST00000339162 NREPQ16612 68 aa13.62□□□□□ -0.23
PDLIM2-203ENST00000339162 SPRR4Q96PI1 79 aa13.62□□□□□ -0.23
PDLIM2-203ENST00000339162 IGLV8-61A0A075B6I0 122 aa13.61□□□□□ -0.23
PDLIM2-203ENST00000339162 C5orf47Q569G3 176 aa13.59□□□□□ -0.23
PDLIM2-203ENST00000339162 ANAPC11Q9NYG5 84 aa13.59□□□□□ -0.23
PDLIM2-203ENST00000339162 IGLV7-43P04211 117 aa13.58□□□□□ -0.24
PDLIM2-203ENST00000339162 IGLV9-49A0A0B4J1Y8 123 aa13.57□□□□□ -0.24
PDLIM2-203ENST00000339162 PKHD1P08F94 4074 aa13.57□□□□□ -0.24
PDLIM2-203ENST00000339162 LRP1BQ9NZR2 4599 aa13.56□□□□□ -0.24
PDLIM2-203ENST00000339162 CXCL6P80162 114 aa13.54□□□□□ -0.24
PDLIM2-203ENST00000339162 KMT2CQ8NEZ4 4911 aaKnown RBP13.53□□□□□ -0.24
PDLIM2-203ENST00000339162 LINC00483Q53H64 154 aa13.52□□□□□ -0.24
PDLIM2-203ENST00000339162 CYSTM1Q9H1C7 97 aa13.52□□□□□ -0.24
PDLIM2-203ENST00000339162 A0A1B0GW54 56 aa13.52□□□□□ -0.25
PDLIM2-203ENST00000339162 Q8N9L7 120 aa13.52□□□□□ -0.25
PDLIM2-203ENST00000339162 ZNF706Q9Y5V0 76 aaPredicted RBP13.51□□□□□ -0.25
PDLIM2-203ENST00000339162 A0A087WSZ3 146 aa13.51□□□□□ -0.25
PDLIM2-203ENST00000339162 BPY2O14599 106 aa13.49□□□□□ -0.25
PDLIM2-203ENST00000339162 LINC00336Q6ZUF6 198 aa13.49□□□□□ -0.25
PDLIM2-203ENST00000339162 RYR2Q92736 4967 aa13.48□□□□□ -0.25
PDLIM2-203ENST00000339162 TMEM258P61165 79 aa13.47□□□□□ -0.25
PDLIM2-203ENST00000339162 RPS28P62857 69 aaKnown RBP13.46□□□□□ -0.25
PDLIM2-203ENST00000339162 J3KT08 172 aa13.45□□□□□ -0.26
PDLIM2-203ENST00000339162 DEFB116Q30KQ4 102 aa13.44□□□□□ -0.26
PDLIM2-203ENST00000339162 MOBPQ13875 183 aa13.43□□□□□ -0.26
PDLIM2-203ENST00000339162 A0A1B0GVY2 172 aa13.42□□□□□ -0.26
PDLIM2-203ENST00000339162 HRCT1Q6UXD1 115 aa13.41□□□□□ -0.26
PDLIM2-203ENST00000339162 IGKV4-1P06312 121 aa13.39□□□□□ -0.27
PDLIM2-203ENST00000339162 VPS13BQ7Z7G8 4022 aa13.37□□□□□ -0.27
PDLIM2-203ENST00000339162 DYNC1H1Q14204 4646 aaKnown RBP13.36□□□□□ -0.27
PDLIM2-203ENST00000339162 DSCR10P59022 87 aa13.36□□□□□ -0.27
PDLIM2-203ENST00000339162 TRAV7A0A075B6U4 112 aa13.35□□□□□ -0.27
PDLIM2-203ENST00000339162 K7EQZ3 153 aa13.31□□□□□ -0.28
PDLIM2-203ENST00000339162 SMR3BP02814 79 aaPredicted RBP13.31□□□□□ -0.28
PDLIM2-203ENST00000339162 C20orf197Q8N268 126 aa13.31□□□□□ -0.28
PDLIM2-203ENST00000339162 RPL37AP61513 92 aaKnown RBP13.29□□□□□ -0.28
PDLIM2-203ENST00000339162 A0A087X002 238 aa13.27□□□□□ -0.28
PDLIM2-203ENST00000339162 LINC00472Q9H8W2 130 aa13.25□□□□□ -0.29
PDLIM2-203ENST00000339162 KLKP1Q107X0 134 aa13.23□□□□□ -0.29
PDLIM2-203ENST00000339162 KRTAP13-2Q52LG2 175 aa13.2□□□□□ -0.3
PDLIM2-203ENST00000339162 H7BZZ5 65 aa13.2□□□□□ -0.3
PDLIM2-203ENST00000339162 OXTP01178 125 aa13.2□□□□□ -0.3
PDLIM2-203ENST00000339162 KRTAP1-4P0C5Y4 121 aa13.2□□□□□ -0.3
PDLIM2-203ENST00000339162 APOBP04114 4563 aaKnown RBP13.19□□□□□ -0.3
PDLIM2-203ENST00000339162 RYR3Q15413 4870 aa13.19□□□□□ -0.3
PDLIM2-203ENST00000339162 Q96NJ1 140 aa13.17□□□□□ -0.3
PDLIM2-203ENST00000339162 FAM236DA0A1B0GTK5 79 aa13.15□□□□□ -0.3
PDLIM2-203ENST00000339162 FAM236CP0DP71 79 aa13.15□□□□□ -0.3
PDLIM2-203ENST00000339162 SSBP3-AS1Q7Z2R9 100 aa13.15□□□□□ -0.3
PDLIM2-203ENST00000339162 FAT1Q14517 4588 aa13.15□□□□□ -0.3
PDLIM2-203ENST00000339162 A8MWP4 228 aa13.12□□□□□ -0.31
PDLIM2-203ENST00000339162 PLA2G1BP04054 148 aaKnown RBP13.12□□□□□ -0.31
PDLIM2-203ENST00000339162 FAM229BQ4G0N7 80 aa13.12□□□□□ -0.31
PDLIM2-203ENST00000339162 HCG22E2RYF7 251 aa13.11□□□□□ -0.31
PDLIM2-203ENST00000339162 WFDC13Q8IUB5 93 aa13.11□□□□□ -0.31
PDLIM2-203ENST00000339162 PRR15Q8IV56 129 aa13.11□□□□□ -0.31
PDLIM2-203ENST00000339162 SNURFQ9Y675 71 aa13.11□□□□□ -0.31
PDLIM2-203ENST00000339162 NDUFC1O43677 76 aa13.08□□□□□ -0.32
PDLIM2-203ENST00000339162 SPINK6Q6UWN8 80 aa13.08□□□□□ -0.32
PDLIM2-203ENST00000339162 OCR1Q9BZK8 76 aa13.06□□□□□ -0.32
PDLIM2-203ENST00000339162 SERP1Q9Y6X1 66 aa13.06□□□□□ -0.32
PDLIM2-203ENST00000339162 CD164Q04900 197 aa13.05□□□□□ -0.32
PDLIM2-203ENST00000339162 KRTAP10-4P60372 401 aaPredicted RBP13.04□□□□□ -0.32
PDLIM2-203ENST00000339162 Q5XG85 94 aa13.03□□□□□ -0.32
PDLIM2-203ENST00000339162 NDUFB1O75438 58 aa13.02□□□□□ -0.33
PDLIM2-203ENST00000339162 TMEM254Q8TBM7 123 aa13.01□□□□□ -0.33
PDLIM2-203ENST00000339162 PRR26Q8N8Z3 221 aa13□□□□□ -0.33
PDLIM2-203ENST00000339162 TYMSOSQ8TAI1 123 aa13□□□□□ -0.33
PDLIM2-203ENST00000339162 CASC2Q6XLA1 102 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms