RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SPRR1AP35321 89 aa9.37□□□□□ -0.91
CLN3-201ENST00000333496 KCNQ1DNQ9H478 68 aa9.37□□□□□ -0.91
CLN3-201ENST00000333496 PRYO14603 147 aa9.36□□□□□ -0.91
CLN3-201ENST00000333496 OR13C6PQ8NH95 151 aa9.36□□□□□ -0.91
CLN3-201ENST00000333496 KRTAP4-16G5E9R7 235 aaPredicted RBP9.35□□□□□ -0.91
CLN3-201ENST00000333496 A0A1B0GX51 115 aa9.34□□□□□ -0.91
CLN3-201ENST00000333496 CRYGAP11844 174 aa9.33□□□□□ -0.92
CLN3-201ENST00000333496 ANAPC13Q9BS18 74 aa9.33□□□□□ -0.92
CLN3-201ENST00000333496 HIGD2AQ9BW72 106 aa9.33□□□□□ -0.92
CLN3-201ENST00000333496 TRBV7-7A0A0K0K1E9 115 aa9.32□□□□□ -0.92
CLN3-201ENST00000333496 KRTAP13-2Q52LG2 175 aa9.32□□□□□ -0.92
CLN3-201ENST00000333496 LRP2P98164 4655 aa9.32□□□□□ -0.92
CLN3-201ENST00000333496 S100A7L2Q5SY68 101 aa9.31□□□□□ -0.92
CLN3-201ENST00000333496 FAM229BQ4G0N7 80 aa9.31□□□□□ -0.92
CLN3-201ENST00000333496 IMUPQ9GZP8 106 aa9.31□□□□□ -0.92
CLN3-201ENST00000333496 IGLV6-57P01721 117 aa9.3□□□□□ -0.92
CLN3-201ENST00000333496 TYMSOSQ8TAI1 123 aa9.3□□□□□ -0.92
CLN3-201ENST00000333496 NDUFV3P56181 108 aaKnown RBP9.29□□□□□ -0.92
CLN3-201ENST00000333496 LINC00643Q86TS7 51 aa9.29□□□□□ -0.92
CLN3-201ENST00000333496 UBR4Q5T4S7 5183 aa9.28□□□□□ -0.92
CLN3-201ENST00000333496 ETDCA0A1B0GVM5 59 aa9.28□□□□□ -0.92
CLN3-201ENST00000333496 ORMDL1Q9P0S3 153 aa9.28□□□□□ -0.92
CLN3-201ENST00000333496 B5MCH6 92 aa9.27□□□□□ -0.92
CLN3-201ENST00000333496 SMCR5Q8TEV8 140 aa9.27□□□□□ -0.92
CLN3-201ENST00000333496 OBSCN-AS1Q96MR7 158 aa9.27□□□□□ -0.92
CLN3-201ENST00000333496 LPAP08519 4548 aa9.27□□□□□ -0.93
CLN3-201ENST00000333496 SPRR4Q96PI1 79 aa9.27□□□□□ -0.93
CLN3-201ENST00000333496 GAGE2AQ6NT46 116 aa9.24□□□□□ -0.93
CLN3-201ENST00000333496 Q9BRP9 147 aa9.24□□□□□ -0.93
CLN3-201ENST00000333496 TRAV23DV6A0A075B6W5 121 aa9.23□□□□□ -0.93
CLN3-201ENST00000333496 C3orf22Q8N5N4 141 aa9.23□□□□□ -0.93
CLN3-201ENST00000333496 ERC2-IT1O76042 136 aa9.23□□□□□ -0.93
CLN3-201ENST00000333496 C6orf99Q4VX62 202 aa9.23□□□□□ -0.93
CLN3-201ENST00000333496 Q6ZRX8 168 aa9.23□□□□□ -0.93
CLN3-201ENST00000333496 JMJD7-PLA2G4BH0Y9G9 81 aa9.22□□□□□ -0.93
CLN3-201ENST00000333496 ZNF706Q9Y5V0 76 aaPredicted RBP9.21□□□□□ -0.93
CLN3-201ENST00000333496 TMEM256-PLSCR3K7ERE1 68 aa9.2□□□□□ -0.94
CLN3-201ENST00000333496 ZNF73O43830 326 aaPredicted RBP9.2□□□□□ -0.94
CLN3-201ENST00000333496 C14orf132Q9NPU4 83 aa9.2□□□□□ -0.94
CLN3-201ENST00000333496 LINC00304Q8N9R0 145 aa9.19□□□□□ -0.94
CLN3-201ENST00000333496 H3BQ85 93 aa9.18□□□□□ -0.94
CLN3-201ENST00000333496 LINC00483Q53H64 154 aa9.18□□□□□ -0.94
CLN3-201ENST00000333496 TRBV7-6A0A0J9YX20 115 aa9.16□□□□□ -0.94
CLN3-201ENST00000333496 FAM236AA0A1B0GUQ0 79 aa9.16□□□□□ -0.94
CLN3-201ENST00000333496 FAM236BA0A1B0GV22 79 aa9.16□□□□□ -0.94
CLN3-201ENST00000333496 LINC00575Q6W349 94 aa9.16□□□□□ -0.94
CLN3-201ENST00000333496 CCKP06307 115 aa9.15□□□□□ -0.94
CLN3-201ENST00000333496 PRR4Q16378 134 aa9.15□□□□□ -0.94
CLN3-201ENST00000333496 Q6JHZ5 121 aa9.15□□□□□ -0.94
CLN3-201ENST00000333496 COX7BP24311 80 aa9.14□□□□□ -0.95
CLN3-201ENST00000333496 ELOF1P60002 83 aaKnown RBP9.14□□□□□ -0.95
CLN3-201ENST00000333496 hADV29S1A0JD25 119 aa9.13□□□□□ -0.95
CLN3-201ENST00000333496 GHRHP01286 108 aa9.12□□□□□ -0.95
CLN3-201ENST00000333496 ST20-AS1Q8NBB2 130 aa9.12□□□□□ -0.95
CLN3-201ENST00000333496 ATP5EP2Q5VTU8 51 aa9.11□□□□□ -0.95
CLN3-201ENST00000333496 LINC00846Q9NV44 126 aa9.11□□□□□ -0.95
CLN3-201ENST00000333496 Q8NBF4 154 aa9.1□□□□□ -0.95
CLN3-201ENST00000333496 RETNLBQ9BQ08 111 aa9.1□□□□□ -0.95
CLN3-201ENST00000333496 CCDC179H3BU77 68 aa9.09□□□□□ -0.95
CLN3-201ENST00000333496 IGLV9-49A0A0B4J1Y8 123 aa9.09□□□□□ -0.95
CLN3-201ENST00000333496 HIST1H4AP62805 103 aaKnown RBP9.08□□□□□ -0.96
CLN3-201ENST00000333496 SPAG11AQ6PDA7 123 aa9.08□□□□□ -0.96
CLN3-201ENST00000333496 LOC110117498A0A087WWA1 95 aa9.07□□□□□ -0.96
CLN3-201ENST00000333496 ATOX1O00244 68 aa9.07□□□□□ -0.96
CLN3-201ENST00000333496 MOBPQ13875 183 aa9.07□□□□□ -0.96
CLN3-201ENST00000333496 DHRS4-AS1Q9P1J3 65 aa9.07□□□□□ -0.96
CLN3-201ENST00000333496 PDE6GP18545 87 aa9.06□□□□□ -0.96
CLN3-201ENST00000333496 RBM3P98179 157 aaKnown RBP9.06□□□□□ -0.96
CLN3-201ENST00000333496 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.06□□□□□ -0.96
CLN3-201ENST00000333496 SSBP3-AS1Q7Z2R9 100 aa9.05□□□□□ -0.96
CLN3-201ENST00000333496 SPRR1BP22528 89 aa9.04□□□□□ -0.96
CLN3-201ENST00000333496 C4orf48Q5BLP8 95 aa9.04□□□□□ -0.96
CLN3-201ENST00000333496 Q6ZQY7 126 aa9.04□□□□□ -0.96
CLN3-201ENST00000333496 LAMTOR3Q9UHA4 124 aa9.04□□□□□ -0.96
CLN3-201ENST00000333496 RNF213Q63HN8 5207 aa9.03□□□□□ -0.96
CLN3-201ENST00000333496 UQCRQO14949 82 aa9.03□□□□□ -0.96
CLN3-201ENST00000333496 Q6ZQT0 140 aa9.03□□□□□ -0.96
CLN3-201ENST00000333496 UBL5Q9BZL1 73 aa9.03□□□□□ -0.96
CLN3-201ENST00000333496 IGKV3D-7A0A0C4DH55 119 aa9.02□□□□□ -0.96
CLN3-201ENST00000333496 SPINK1P00995 79 aa9.02□□□□□ -0.97
CLN3-201ENST00000333496 DSCR8Q96T75 97 aa9.02□□□□□ -0.97
CLN3-201ENST00000333496 C9orf153Q5TBE3 101 aa9□□□□□ -0.97
CLN3-201ENST00000333496 COX7CP15954 63 aa8.99□□□□□ -0.97
CLN3-201ENST00000333496 SS18L2Q9UHA2 77 aa8.99□□□□□ -0.97
CLN3-201ENST00000333496 IGLV7-46A0A075B6I9 117 aa8.98□□□□□ -0.97
CLN3-201ENST00000333496 LINC01547P58512 204 aaPredicted RBP8.98□□□□□ -0.97
CLN3-201ENST00000333496 DEFB105AQ8NG35 78 aa8.97□□□□□ -0.97
CLN3-201ENST00000333496 RPS29P62273 56 aaKnown RBP8.96□□□□□ -0.98
CLN3-201ENST00000333496 TRBV7-4A0A0J9YYF1 115 aa8.95□□□□□ -0.98
CLN3-201ENST00000333496 TPRXLQ17RH7 258 aa8.95□□□□□ -0.98
CLN3-201ENST00000333496 IGLV5-48A0A075B6I7 105 aa8.94□□□□□ -0.98
CLN3-201ENST00000333496 SMIM29Q86T20 159 aa8.94□□□□□ -0.98
CLN3-201ENST00000333496 Q8N377 158 aa8.94□□□□□ -0.98
CLN3-201ENST00000333496 A0A087WVE0 104 aa8.93□□□□□ -0.98
CLN3-201ENST00000333496 FP248Q71RG6 208 aaPredicted RBP8.93□□□□□ -0.98
CLN3-201ENST00000333496 SERP2Q8N6R1 65 aa8.93□□□□□ -0.98
CLN3-201ENST00000333496 CXCL6P80162 114 aa8.91□□□□□ -0.98
CLN3-201ENST00000333496 Q6ZVQ6 151 aa8.9□□□□□ -0.99
CLN3-201ENST00000333496 HRCT1Q6UXD1 115 aa8.87□□□□□ -0.99
CLN3-201ENST00000333496 MUC2Q02817 5179 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms