RNA–Protein interactions for RNA: ENST00000325404.2

SOX2-201, Transcript of SRY-box 2, humanhuman

APPRIS P1 BASIC

Gene SOX2, Length 2,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2-201ENST00000325404 FP248Q71RG6 208 aaPredicted RBP12.48□□□□□ -0.41
SOX2-201ENST00000325404 H0Y9J4 135 aa12.48□□□□□ -0.41
SOX2-201ENST00000325404 KRTAP1-5Q9BYS1 174 aa12.48□□□□□ -0.41
SOX2-201ENST00000325404 LINC00336Q6ZUF6 198 aa12.47□□□□□ -0.41
SOX2-201ENST00000325404 HCG22E2RYF7 251 aa12.46□□□□□ -0.41
SOX2-201ENST00000325404 DYNC2H1Q8NCM8 4307 aaKnown RBP12.46□□□□□ -0.42
SOX2-201ENST00000325404 SPRR1BP22528 89 aa12.45□□□□□ -0.42
SOX2-201ENST00000325404 ZCCHC13Q8WW36 166 aaKnown RBP12.45□□□□□ -0.42
SOX2-201ENST00000325404 PSCAO43653 123 aa12.45□□□□□ -0.42
SOX2-201ENST00000325404 PRLHP81277 87 aa12.45□□□□□ -0.42
SOX2-201ENST00000325404 IGKV2-24A0A0C4DH68 120 aa12.44□□□□□ -0.42
SOX2-201ENST00000325404 MEGF8Q7Z7M0 2845 aa12.44□□□□□ -0.42
SOX2-201ENST00000325404 PKIGQ9Y2B9 76 aa12.44□□□□□ -0.42
SOX2-201ENST00000325404 PRKDCP78527 4128 aaKnown RBP12.44□□□□□ -0.42
SOX2-201ENST00000325404 SEC61GP60059 68 aa12.41□□□□□ -0.42
SOX2-201ENST00000325404 KRTAP21-3Q3LHN1 58 aa12.41□□□□□ -0.42
SOX2-201ENST00000325404 UBE2AP49459 152 aa12.4□□□□□ -0.42
SOX2-201ENST00000325404 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.39□□□□□ -0.43
SOX2-201ENST00000325404 CSMD3Q7Z407 3707 aa12.38□□□□□ -0.43
SOX2-201ENST00000325404 A0A087WSZ3 146 aa12.38□□□□□ -0.43
SOX2-201ENST00000325404 LYSTQ99698 3801 aa12.36□□□□□ -0.43
SOX2-201ENST00000325404 LINC00474Q9P2X8 69 aa12.36□□□□□ -0.43
SOX2-201ENST00000325404 TENM2Q9NT68 2774 aa12.35□□□□□ -0.43
SOX2-201ENST00000325404 A0A0G2JQZ4 141 aa12.35□□□□□ -0.43
SOX2-201ENST00000325404 C9orf163Q8N9P6 203 aa12.35□□□□□ -0.43
SOX2-201ENST00000325404 PLECQ15149 4684 aaKnown RBP12.35□□□□□ -0.43
SOX2-201ENST00000325404 PHF5AQ7RTV0 110 aaKnown RBP12.34□□□□□ -0.43
SOX2-201ENST00000325404 KRTAP11-1Q8IUC1 163 aa12.32□□□□□ -0.44
SOX2-201ENST00000325404 V9GYY9 64 aa12.32□□□□□ -0.44
SOX2-201ENST00000325404 DNAH7Q8WXX0 4024 aa12.32□□□□□ -0.44
SOX2-201ENST00000325404 NBDYA0A0U1RRE5 68 aa12.32□□□□□ -0.44
SOX2-201ENST00000325404 KRTAP29-1A8MX34 341 aaPredicted RBP12.31□□□□□ -0.44
SOX2-201ENST00000325404 NDUFB1O75438 58 aa12.31□□□□□ -0.44
SOX2-201ENST00000325404 FAM229BQ4G0N7 80 aa12.31□□□□□ -0.44
SOX2-201ENST00000325404 hDV103S1A0JD37 113 aa12.3□□□□□ -0.44
SOX2-201ENST00000325404 LRCOL1A6NCL2 159 aa12.29□□□□□ -0.44
SOX2-201ENST00000325404 CHTF8P0CG12 524 aa12.29□□□□□ -0.44
SOX2-201ENST00000325404 CYP4F30PQ9H0H9 118 aa12.29□□□□□ -0.44
SOX2-201ENST00000325404 DEFB116Q30KQ4 102 aa12.28□□□□□ -0.44
SOX2-201ENST00000325404 PRR15Q8IV56 129 aa12.28□□□□□ -0.44
SOX2-201ENST00000325404 LINC00472Q9H8W2 130 aa12.28□□□□□ -0.44
SOX2-201ENST00000325404 STARD9Q9P2P6 4700 aa12.27□□□□□ -0.45
SOX2-201ENST00000325404 MP68P56378 58 aa12.27□□□□□ -0.45
SOX2-201ENST00000325404 A8MWP4 228 aa12.26□□□□□ -0.45
SOX2-201ENST00000325404 H3BPC8 53 aa12.26□□□□□ -0.45
SOX2-201ENST00000325404 WFDC13Q8IUB5 93 aa12.25□□□□□ -0.45
SOX2-201ENST00000325404 KRTAP13-1Q8IUC0 172 aa12.25□□□□□ -0.45
SOX2-201ENST00000325404 DNAH10Q8IVF4 4471 aa12.24□□□□□ -0.45
SOX2-201ENST00000325404 C1orf195Q5TG92 126 aa12.24□□□□□ -0.45
SOX2-201ENST00000325404 FBN3Q75N90 2809 aa12.22□□□□□ -0.45
SOX2-201ENST00000325404 RPL37AP61513 92 aaKnown RBP12.21□□□□□ -0.45
SOX2-201ENST00000325404 CASC2Q6XLA1 102 aa12.21□□□□□ -0.45
SOX2-201ENST00000325404 C1orf64Q8NEQ6 169 aa12.21□□□□□ -0.45
SOX2-201ENST00000325404 Q6ZRN7 208 aaPredicted RBP12.2□□□□□ -0.46
SOX2-201ENST00000325404 TRAV22A0A0B4J277 110 aa12.19□□□□□ -0.46
SOX2-201ENST00000325404 VPS13DQ5THJ4 4388 aa12.19□□□□□ -0.46
SOX2-201ENST00000325404 MPLKIPQ8TAP9 179 aa12.18□□□□□ -0.46
SOX2-201ENST00000325404 Q1T7F1 81 aa12.16□□□□□ -0.46
SOX2-201ENST00000325404 SPANXA2-OT1Q8N9U9 137 aa12.15□□□□□ -0.46
SOX2-201ENST00000325404 BRK1Q8WUW1 75 aa12.14□□□□□ -0.47
SOX2-201ENST00000325404 SPACA4Q8TDM5 124 aa12.13□□□□□ -0.47
SOX2-201ENST00000325404 LINC00208Q96KT6 92 aa12.13□□□□□ -0.47
SOX2-201ENST00000325404 H0Y9P7 68 aa12.13□□□□□ -0.47
SOX2-201ENST00000325404 PANO1I0J062 215 aa12.12□□□□□ -0.47
SOX2-201ENST00000325404 LINC00483Q53H64 154 aa12.11□□□□□ -0.47
SOX2-201ENST00000325404 Q6ZR54 194 aa12.09□□□□□ -0.47
SOX2-201ENST00000325404 MMP24-AS1A0A0U1RRL7 71 aa12.09□□□□□ -0.47
SOX2-201ENST00000325404 WWC2-AS2Q96NR7 200 aa12.07□□□□□ -0.48
SOX2-201ENST00000325404 ASB16-AS1Q495Z4 193 aa12.06□□□□□ -0.48
SOX2-201ENST00000325404 ZNF706Q9Y5V0 76 aaPredicted RBP12.06□□□□□ -0.48
SOX2-201ENST00000325404 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.05□□□□□ -0.48
SOX2-201ENST00000325404 TGP01266 2768 aa12.05□□□□□ -0.48
SOX2-201ENST00000325404 Q96NJ1 140 aa12.05□□□□□ -0.48
SOX2-201ENST00000325404 A0A087WTM6 91 aa12.04□□□□□ -0.48
SOX2-201ENST00000325404 LY6G6CO95867 125 aa12.04□□□□□ -0.48
SOX2-201ENST00000325404 MOBPQ13875 183 aa12.02□□□□□ -0.48
SOX2-201ENST00000325404 TP53AIP1Q9HCN2 124 aa12.02□□□□□ -0.48
SOX2-201ENST00000325404 PRR4Q16378 134 aa12.02□□□□□ -0.49
SOX2-201ENST00000325404 SRRM2Q9UQ35 2752 aaKnown RBP12□□□□□ -0.49
SOX2-201ENST00000325404 C1orf134Q5TEV5 83 aa12□□□□□ -0.49
SOX2-201ENST00000325404 IGLV9-49A0A0B4J1Y8 123 aa11.99□□□□□ -0.49
SOX2-201ENST00000325404 KMT2AQ03164 3969 aa11.98□□□□□ -0.49
SOX2-201ENST00000325404 IGLV5-52A0A0A0MRZ9 124 aa11.96□□□□□ -0.49
SOX2-201ENST00000325404 PLAC8Q9NZF1 115 aa11.95□□□□□ -0.5
SOX2-201ENST00000325404 C8orf17Q9NRJ1 99 aa11.95□□□□□ -0.5
SOX2-201ENST00000325404 PSORS1C2Q9UIG4 136 aa11.93□□□□□ -0.5
SOX2-201ENST00000325404 IGLV7-46A0A075B6I9 117 aa11.92□□□□□ -0.5
SOX2-201ENST00000325404 RTL8CO15255 209 aa11.92□□□□□ -0.5
SOX2-201ENST00000325404 A0A1B0GVX0 72 aa11.92□□□□□ -0.5
SOX2-201ENST00000325404 ZNF861PO60384 105 aa11.92□□□□□ -0.5
SOX2-201ENST00000325404 DNAH2Q9P225 4427 aa11.92□□□□□ -0.5
SOX2-201ENST00000325404 PMAIP1Q13794 54 aa11.89□□□□□ -0.51
SOX2-201ENST00000325404 DNAH6Q9C0G6 4158 aa11.87□□□□□ -0.51
SOX2-201ENST00000325404 CDK2AP2O75956 126 aa11.86□□□□□ -0.51
SOX2-201ENST00000325404 LIMD2Q9BT23 127 aa11.86□□□□□ -0.51
SOX2-201ENST00000325404 ALMS1Q8TCU4 4167 aa11.85□□□□□ -0.51
SOX2-201ENST00000325404 PSPHP1O15172 72 aa11.84□□□□□ -0.51
SOX2-201ENST00000325404 HECTD4Q9Y4D8 3996 aa11.84□□□□□ -0.51
SOX2-201ENST00000325404 DNAH17Q9UFH2 4485 aa11.84□□□□□ -0.51
SOX2-201ENST00000325404 Q8N9P0 234 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms