RNA–Protein interactions for RNA: ENST00000319172.9

TMEM39A-201, Transcript of transmembrane protein 39A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM39A, Length 4,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-201ENST00000319172 RETNLBQ9BQ08 111 aa6□□□□□ -1.45
TMEM39A-201ENST00000319172 H3BS24 57 aa5.99□□□□□ -1.45
TMEM39A-201ENST00000319172 SMR3BP02814 79 aaPredicted RBP5.99□□□□□ -1.45
TMEM39A-201ENST00000319172 Q6ZQT0 140 aa5.99□□□□□ -1.45
TMEM39A-201ENST00000319172 CNBPP62633 177 aaKnown RBP5.97□□□□□ -1.45
TMEM39A-201ENST00000319172 LINC00476Q8WZB0 136 aa5.97□□□□□ -1.45
TMEM39A-201ENST00000319172 SNURFQ9Y675 71 aa5.97□□□□□ -1.45
TMEM39A-201ENST00000319172 KRTAP26-1Q6PEX3 210 aa5.97□□□□□ -1.45
TMEM39A-201ENST00000319172 LIMD2Q9BT23 127 aa5.97□□□□□ -1.45
TMEM39A-201ENST00000319172 A0A0G2JQZ4 141 aa5.96□□□□□ -1.46
TMEM39A-201ENST00000319172 ERC2-IT1O76042 136 aa5.96□□□□□ -1.46
TMEM39A-201ENST00000319172 TYMSOSQ8TAI1 123 aa5.96□□□□□ -1.46
TMEM39A-201ENST00000319172 TNP2Q05952 138 aa5.95□□□□□ -1.46
TMEM39A-201ENST00000319172 LINC00208Q96KT6 92 aa5.95□□□□□ -1.46
TMEM39A-201ENST00000319172 J3QL48 77 aa5.95□□□□□ -1.46
TMEM39A-201ENST00000319172 KTN1-AS1Q86SY8 53 aa5.95□□□□□ -1.46
TMEM39A-201ENST00000319172 Q8N377 158 aa5.95□□□□□ -1.46
TMEM39A-201ENST00000319172 PLA2G1BP04054 148 aaKnown RBP5.94□□□□□ -1.46
TMEM39A-201ENST00000319172 Q8NBF4 154 aa5.94□□□□□ -1.46
TMEM39A-201ENST00000319172 PLA2G2DQ9UNK4 145 aa5.94□□□□□ -1.46
TMEM39A-201ENST00000319172 LOC110117498A0A087WWA1 95 aa5.94□□□□□ -1.46
TMEM39A-201ENST00000319172 CXCL6P80162 114 aa5.94□□□□□ -1.46
TMEM39A-201ENST00000319172 RPL37AP61513 92 aaKnown RBP5.93□□□□□ -1.46
TMEM39A-201ENST00000319172 ANAPC11Q9NYG5 84 aa5.91□□□□□ -1.46
TMEM39A-201ENST00000319172 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.91□□□□□ -1.46
TMEM39A-201ENST00000319172 PSORS1C2Q9UIG4 136 aa5.9□□□□□ -1.47
TMEM39A-201ENST00000319172 PCOTHQ58A44 107 aa5.89□□□□□ -1.47
TMEM39A-201ENST00000319172 IGKV2D-30A0A075B6S6 120 aa5.89□□□□□ -1.47
TMEM39A-201ENST00000319172 IGKV2-30P06310 120 aa5.89□□□□□ -1.47
TMEM39A-201ENST00000319172 MPLKIPQ8TAP9 179 aa5.88□□□□□ -1.47
TMEM39A-201ENST00000319172 IGLV5-37A0A075B6J1 123 aa5.88□□□□□ -1.47
TMEM39A-201ENST00000319172 HCG22E2RYF7 251 aa5.88□□□□□ -1.47
TMEM39A-201ENST00000319172 PKD1L1Q8TDX9 2849 aa5.88□□□□□ -1.47
TMEM39A-201ENST00000319172 VPS13CQ709C8 3753 aa5.87□□□□□ -1.47
TMEM39A-201ENST00000319172 TRAV7A0A075B6U4 112 aa5.87□□□□□ -1.47
TMEM39A-201ENST00000319172 SPINK1P00995 79 aa5.87□□□□□ -1.47
TMEM39A-201ENST00000319172 IGFL1Q6UW32 110 aa5.87□□□□□ -1.47
TMEM39A-201ENST00000319172 TRBV7-4A0A0J9YYF1 115 aa5.87□□□□□ -1.47
TMEM39A-201ENST00000319172 ZNF861PO60384 105 aa5.87□□□□□ -1.47
TMEM39A-201ENST00000319172 LCA10Q71F78 164 aa5.86□□□□□ -1.47
TMEM39A-201ENST00000319172 SMIM29Q86T20 159 aa5.85□□□□□ -1.47
TMEM39A-201ENST00000319172 SPTSSBQ8NFR3 76 aa5.84□□□□□ -1.47
TMEM39A-201ENST00000319172 RBM12B-AS1Q9P1G2 102 aa5.84□□□□□ -1.47
TMEM39A-201ENST00000319172 A0A1W2PNM2 257 aa5.83□□□□□ -1.48
TMEM39A-201ENST00000319172 H0Y9P7 68 aa5.83□□□□□ -1.48
TMEM39A-201ENST00000319172 IGLV7-43P04211 117 aa5.82□□□□□ -1.48
TMEM39A-201ENST00000319172 ANK3Q12955 4377 aaKnown RBP5.82□□□□□ -1.48
TMEM39A-201ENST00000319172 A0A1B0GW54 56 aa5.82□□□□□ -1.48
TMEM39A-201ENST00000319172 TRRAPQ9Y4A5 3859 aa5.82□□□□□ -1.48
TMEM39A-201ENST00000319172 OXTP01178 125 aa5.81□□□□□ -1.48
TMEM39A-201ENST00000319172 OBSCN-AS1Q96MR7 158 aa5.81□□□□□ -1.48
TMEM39A-201ENST00000319172 K7EQZ3 153 aa5.81□□□□□ -1.48
TMEM39A-201ENST00000319172 SPRR4Q96PI1 79 aa5.81□□□□□ -1.48
TMEM39A-201ENST00000319172 hDV103S1A0JD37 113 aa5.8□□□□□ -1.48
TMEM39A-201ENST00000319172 PANO1I0J062 215 aa5.8□□□□□ -1.48
TMEM39A-201ENST00000319172 TMEM254Q8TBM7 123 aa5.8□□□□□ -1.48
TMEM39A-201ENST00000319172 K7ERS5 55 aa5.79□□□□□ -1.48
TMEM39A-201ENST00000319172 SPRR1AP35321 89 aa5.79□□□□□ -1.48
TMEM39A-201ENST00000319172 PRR26Q8N8Z3 221 aa5.79□□□□□ -1.48
TMEM39A-201ENST00000319172 LINC00313P59037 77 aa5.79□□□□□ -1.48
TMEM39A-201ENST00000319172 IGLV5-48A0A075B6I7 105 aa5.79□□□□□ -1.48
TMEM39A-201ENST00000319172 Q96NJ1 140 aa5.78□□□□□ -1.48
TMEM39A-201ENST00000319172 ZNF469Q96JG9 3925 aaPredicted RBP5.78□□□□□ -1.48
TMEM39A-201ENST00000319172 TENM2Q9NT68 2774 aa5.78□□□□□ -1.48
TMEM39A-201ENST00000319172 LINC00304Q8N9R0 145 aa5.78□□□□□ -1.48
TMEM39A-201ENST00000319172 C1orf64Q8NEQ6 169 aa5.77□□□□□ -1.49
TMEM39A-201ENST00000319172 TGP01266 2768 aa5.77□□□□□ -1.49
TMEM39A-201ENST00000319172 KRTAP10-2P60368 255 aa5.77□□□□□ -1.49
TMEM39A-201ENST00000319172 C8orf87E5RJ46 101 aa5.77□□□□□ -1.49
TMEM39A-201ENST00000319172 C7orf65Q6ZTY9 151 aa5.77□□□□□ -1.49
TMEM39A-201ENST00000319172 Q6ZR54 194 aa5.76□□□□□ -1.49
TMEM39A-201ENST00000319172 PRR15LQ9BU68 103 aa5.76□□□□□ -1.49
TMEM39A-201ENST00000319172 SSBP3-AS1Q7Z2R9 100 aa5.76□□□□□ -1.49
TMEM39A-201ENST00000319172 ATP11AUNQ6ZP68 121 aa5.75□□□□□ -1.49
TMEM39A-201ENST00000319172 PLAC8Q9NZF1 115 aa5.75□□□□□ -1.49
TMEM39A-201ENST00000319172 A8MWP4 228 aa5.74□□□□□ -1.49
TMEM39A-201ENST00000319172 A6NED7 52 aa5.73□□□□□ -1.49
TMEM39A-201ENST00000319172 Q6ZRN7 208 aaPredicted RBP5.73□□□□□ -1.49
TMEM39A-201ENST00000319172 KLKP1Q107X0 134 aa5.73□□□□□ -1.49
TMEM39A-201ENST00000319172 ASB16-AS1Q495Z4 193 aa5.73□□□□□ -1.49
TMEM39A-201ENST00000319172 C9orf92A6NGG3 77 aa5.72□□□□□ -1.49
TMEM39A-201ENST00000319172 KRTAP10-1P60331 282 aa5.72□□□□□ -1.49
TMEM39A-201ENST00000319172 TP53AIP1Q9HCN2 124 aa5.71□□□□□ -1.49
TMEM39A-201ENST00000319172 SPAG11AQ6PDA7 123 aa5.71□□□□□ -1.5
TMEM39A-201ENST00000319172 KRTAP7-1Q8IUC3 87 aa5.71□□□□□ -1.5
TMEM39A-201ENST00000319172 COX6B2Q6YFQ2 88 aa5.71□□□□□ -1.5
TMEM39A-201ENST00000319172 CYP4F30PQ9H0H9 118 aa5.7□□□□□ -1.5
TMEM39A-201ENST00000319172 KRTAP4-16G5E9R7 235 aaPredicted RBP5.7□□□□□ -1.5
TMEM39A-201ENST00000319172 A0A087X002 238 aa5.7□□□□□ -1.5
TMEM39A-201ENST00000319172 KRTAP11-1Q8IUC1 163 aa5.7□□□□□ -1.5
TMEM39A-201ENST00000319172 TRAV22A0A0B4J277 110 aa5.69□□□□□ -1.5
TMEM39A-201ENST00000319172 Q1T7F1 81 aa5.69□□□□□ -1.5
TMEM39A-201ENST00000319172 A0A0A0MQY5 61 aa5.69□□□□□ -1.5
TMEM39A-201ENST00000319172 LCE6AA0A183 80 aa5.69□□□□□ -1.5
TMEM39A-201ENST00000319172 PSPHP1O15172 72 aa5.68□□□□□ -1.5
TMEM39A-201ENST00000319172 DSCR10P59022 87 aa5.68□□□□□ -1.5
TMEM39A-201ENST00000319172 NOTCH2NLQ7Z3S9 236 aa5.68□□□□□ -1.5
TMEM39A-201ENST00000319172 KRTAP21-3Q3LHN1 58 aa5.67□□□□□ -1.5
TMEM39A-201ENST00000319172 C8orf17Q9NRJ1 99 aa5.66□□□□□ -1.5
TMEM39A-201ENST00000319172 A8MUN3 132 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms