RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TRBV7-6A0A0J9YX20 115 aa11.05□□□□□ -0.64
HMGA1-201ENST00000311487 COX7BP24311 80 aa11.05□□□□□ -0.64
HMGA1-201ENST00000311487 SPRR1AP35321 89 aa11.05□□□□□ -0.64
HMGA1-201ENST00000311487 ELOF1P60002 83 aaKnown RBP11.05□□□□□ -0.64
HMGA1-201ENST00000311487 TRBV7-7A0A0K0K1E9 115 aa11.05□□□□□ -0.64
HMGA1-201ENST00000311487 HIGD2AQ9BW72 106 aa11.05□□□□□ -0.64
HMGA1-201ENST00000311487 ABCA13Q86UQ4 5058 aa11.05□□□□□ -0.64
HMGA1-201ENST00000311487 TMEM256-PLSCR3K7ERE1 68 aa11.04□□□□□ -0.64
HMGA1-201ENST00000311487 ZNF861PO60384 105 aa11.03□□□□□ -0.64
HMGA1-201ENST00000311487 C14orf132Q9NPU4 83 aa11.03□□□□□ -0.64
HMGA1-201ENST00000311487 ACYP1P07311 99 aa11.02□□□□□ -0.65
HMGA1-201ENST00000311487 RPS28P62857 69 aaKnown RBP11.02□□□□□ -0.65
HMGA1-201ENST00000311487 KRTAP13-1Q8IUC0 172 aa11.02□□□□□ -0.65
HMGA1-201ENST00000311487 IMUPQ9GZP8 106 aa11.01□□□□□ -0.65
HMGA1-201ENST00000311487 Q9BRP9 147 aa11.01□□□□□ -0.65
HMGA1-201ENST00000311487 Q6ZQY7 126 aa11□□□□□ -0.65
HMGA1-201ENST00000311487 ERC2-IT1O76042 136 aa10.99□□□□□ -0.65
HMGA1-201ENST00000311487 GAGE2AQ6NT46 116 aa10.99□□□□□ -0.65
HMGA1-201ENST00000311487 Q6ZRX8 168 aa10.99□□□□□ -0.65
HMGA1-201ENST00000311487 C3orf22Q8N5N4 141 aa10.99□□□□□ -0.65
HMGA1-201ENST00000311487 SMCR5Q8TEV8 140 aa10.99□□□□□ -0.65
HMGA1-201ENST00000311487 MYCBP2O75592 4640 aa10.98□□□□□ -0.65
HMGA1-201ENST00000311487 C9orf153Q5TBE3 101 aa10.98□□□□□ -0.65
HMGA1-201ENST00000311487 JMJD7-PLA2G4BH0Y9G9 81 aa10.97□□□□□ -0.65
HMGA1-201ENST00000311487 UQCRQO14949 82 aa10.97□□□□□ -0.65
HMGA1-201ENST00000311487 ANAPC11Q9NYG5 84 aa10.97□□□□□ -0.65
HMGA1-201ENST00000311487 SPINK6Q6UWN8 80 aa10.97□□□□□ -0.65
HMGA1-201ENST00000311487 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.97□□□□□ -0.65
HMGA1-201ENST00000311487 H0Y9J4 135 aa10.95□□□□□ -0.66
HMGA1-201ENST00000311487 LRP1Q07954 4544 aaKnown RBP10.95□□□□□ -0.66
HMGA1-201ENST00000311487 PCLOQ9Y6V0 5065 aa10.94□□□□□ -0.66
HMGA1-201ENST00000311487 H3BQ85 93 aa10.94□□□□□ -0.66
HMGA1-201ENST00000311487 ST20-AS1Q8NBB2 130 aa10.93□□□□□ -0.66
HMGA1-201ENST00000311487 CCKP06307 115 aa10.92□□□□□ -0.66
HMGA1-201ENST00000311487 PKHD1L1Q86WI1 4243 aa10.91□□□□□ -0.66
HMGA1-201ENST00000311487 LAMTOR3Q9UHA4 124 aa10.91□□□□□ -0.66
HMGA1-201ENST00000311487 FAM236AA0A1B0GUQ0 79 aa10.89□□□□□ -0.67
HMGA1-201ENST00000311487 FAM236BA0A1B0GV22 79 aa10.89□□□□□ -0.67
HMGA1-201ENST00000311487 DEFB105AQ8NG35 78 aa10.89□□□□□ -0.67
HMGA1-201ENST00000311487 GHRHP01286 108 aa10.88□□□□□ -0.67
HMGA1-201ENST00000311487 RBM3P98179 157 aaKnown RBP10.88□□□□□ -0.67
HMGA1-201ENST00000311487 LINC00643Q86TS7 51 aa10.88□□□□□ -0.67
HMGA1-201ENST00000311487 KRTAP1-4P0C5Y4 121 aa10.87□□□□□ -0.67
HMGA1-201ENST00000311487 CRYGAP11844 174 aa10.87□□□□□ -0.67
HMGA1-201ENST00000311487 LINC00846Q9NV44 126 aa10.87□□□□□ -0.67
HMGA1-201ENST00000311487 DHRS4-AS1Q9P1J3 65 aa10.87□□□□□ -0.67
HMGA1-201ENST00000311487 LOC110117498A0A087WWA1 95 aa10.86□□□□□ -0.67
HMGA1-201ENST00000311487 COX7CP15954 63 aa10.85□□□□□ -0.67
HMGA1-201ENST00000311487 Q6ZQT0 140 aa10.85□□□□□ -0.67
HMGA1-201ENST00000311487 SPRR4Q96PI1 79 aa10.84□□□□□ -0.67
HMGA1-201ENST00000311487 PRR26Q8N8Z3 221 aa10.83□□□□□ -0.68
HMGA1-201ENST00000311487 A0A087X002 238 aa10.82□□□□□ -0.68
HMGA1-201ENST00000311487 TMEM258P61165 79 aa10.82□□□□□ -0.68
HMGA1-201ENST00000311487 DSCR8Q96T75 97 aa10.82□□□□□ -0.68
HMGA1-201ENST00000311487 TRBV7-4A0A0J9YYF1 115 aa10.8□□□□□ -0.68
HMGA1-201ENST00000311487 LINC01547P58512 204 aaPredicted RBP10.8□□□□□ -0.68
HMGA1-201ENST00000311487 FAT3Q8TDW7 4589 aa10.79□□□□□ -0.68
HMGA1-201ENST00000311487 ATOX1O00244 68 aa10.79□□□□□ -0.68
HMGA1-201ENST00000311487 Q8N377 158 aa10.79□□□□□ -0.68
HMGA1-201ENST00000311487 PDE6GP18545 87 aa10.78□□□□□ -0.68
HMGA1-201ENST00000311487 ZNF706Q9Y5V0 76 aaPredicted RBP10.77□□□□□ -0.69
HMGA1-201ENST00000311487 Q6JHZ5 121 aa10.76□□□□□ -0.69
HMGA1-201ENST00000311487 IGLV9-49A0A0B4J1Y8 123 aa10.76□□□□□ -0.69
HMGA1-201ENST00000311487 KRTAP13-2Q52LG2 175 aa10.75□□□□□ -0.69
HMGA1-201ENST00000311487 IGLV5-48A0A075B6I7 105 aa10.74□□□□□ -0.69
HMGA1-201ENST00000311487 HIST1H4AP62805 103 aaKnown RBP10.74□□□□□ -0.69
HMGA1-201ENST00000311487 IGKV3D-7A0A0C4DH55 119 aa10.72□□□□□ -0.69
HMGA1-201ENST00000311487 LINC00483Q53H64 154 aa10.72□□□□□ -0.69
HMGA1-201ENST00000311487 TNXBP22105 4242 aa10.72□□□□□ -0.69
HMGA1-201ENST00000311487 MT1HL1P0DM35 61 aa10.71□□□□□ -0.69
HMGA1-201ENST00000311487 UBL5Q9BZL1 73 aa10.7□□□□□ -0.7
HMGA1-201ENST00000311487 J3QL48 77 aa10.69□□□□□ -0.7
HMGA1-201ENST00000311487 MOBPQ13875 183 aa10.69□□□□□ -0.7
HMGA1-201ENST00000311487 SMIM29Q86T20 159 aa10.69□□□□□ -0.7
HMGA1-201ENST00000311487 KRTAP29-1A8MX34 341 aaPredicted RBP10.68□□□□□ -0.7
HMGA1-201ENST00000311487 OXTP01178 125 aa10.68□□□□□ -0.7
HMGA1-201ENST00000311487 TYMSOSQ8TAI1 123 aa10.68□□□□□ -0.7
HMGA1-201ENST00000311487 A0A0G2JQZ4 141 aa10.68□□□□□ -0.7
HMGA1-201ENST00000311487 Q5XG85 94 aa10.68□□□□□ -0.7
HMGA1-201ENST00000311487 KRTAP10-8P60410 259 aa10.67□□□□□ -0.7
HMGA1-201ENST00000311487 FAM229BQ4G0N7 80 aa10.67□□□□□ -0.7
HMGA1-201ENST00000311487 ATP5EP2Q5VTU8 51 aa10.66□□□□□ -0.7
HMGA1-201ENST00000311487 DMBT1Q9UGM3 2413 aaPredicted RBP10.66□□□□□ -0.7
HMGA1-201ENST00000311487 SPRR1BP22528 89 aa10.66□□□□□ -0.7
HMGA1-201ENST00000311487 PRO0628Q9UI54 55 aa10.66□□□□□ -0.7
HMGA1-201ENST00000311487 Q6ZVQ6 151 aa10.65□□□□□ -0.7
HMGA1-201ENST00000311487 HRCT1Q6UXD1 115 aa10.64□□□□□ -0.71
HMGA1-201ENST00000311487 SERP2Q8N6R1 65 aa10.64□□□□□ -0.71
HMGA1-201ENST00000311487 C4orf26Q17RF5 130 aa10.64□□□□□ -0.71
HMGA1-201ENST00000311487 Q8NBF4 154 aa10.61□□□□□ -0.71
HMGA1-201ENST00000311487 A0A087WVE0 104 aa10.6□□□□□ -0.71
HMGA1-201ENST00000311487 A0A1W2PNM2 257 aa10.57□□□□□ -0.72
HMGA1-201ENST00000311487 F8WEM9 126 aa10.56□□□□□ -0.72
HMGA1-201ENST00000311487 CXCL6P80162 114 aa10.54□□□□□ -0.72
HMGA1-201ENST00000311487 CYSTM1Q9H1C7 97 aa10.54□□□□□ -0.72
HMGA1-201ENST00000311487 LINC00304Q8N9R0 145 aa10.54□□□□□ -0.72
HMGA1-201ENST00000311487 HERC1Q15751 4861 aa10.54□□□□□ -0.72
HMGA1-201ENST00000311487 A0A1B0GW54 56 aa10.52□□□□□ -0.72
HMGA1-201ENST00000311487 IGLV8-61A0A075B6I0 122 aa10.52□□□□□ -0.73
HMGA1-201ENST00000311487 SSBP3-AS1Q7Z2R9 100 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms