RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 A0A1B0GU33 70 aa4.17□□□□□ -1.74
VPS35-201ENST00000299138 POLQO75417 2590 aa4.17□□□□□ -1.74
VPS35-201ENST00000299138 DNAH10OSP0CZ25 163 aa4.17□□□□□ -1.74
VPS35-201ENST00000299138 ASB16-AS1Q495Z4 193 aa4.17□□□□□ -1.74
VPS35-201ENST00000299138 FAM168BA1KXE4 195 aa4.16□□□□□ -1.74
VPS35-201ENST00000299138 SPRR1BP22528 89 aa4.16□□□□□ -1.74
VPS35-201ENST00000299138 IGFL1Q6UW32 110 aa4.16□□□□□ -1.74
VPS35-201ENST00000299138 IGLV1-50A0A075B6I6 118 aa4.16□□□□□ -1.74
VPS35-201ENST00000299138 A0A1B0GVX0 72 aa4.16□□□□□ -1.74
VPS35-201ENST00000299138 CYSTM1Q9H1C7 97 aa4.16□□□□□ -1.74
VPS35-201ENST00000299138 CSMD2Q7Z408 3487 aa4.14□□□□□ -1.75
VPS35-201ENST00000299138 SONP18583 2426 aaKnown RBP4.14□□□□□ -1.75
VPS35-201ENST00000299138 C16orf90A8MZG2 172 aa4.14□□□□□ -1.75
VPS35-201ENST00000299138 Q8N377 158 aa4.14□□□□□ -1.75
VPS35-201ENST00000299138 ABCA12Q86UK0 2595 aa4.14□□□□□ -1.75
VPS35-201ENST00000299138 ATMQ13315 3056 aa4.13□□□□□ -1.75
VPS35-201ENST00000299138 ANKRD17O75179 2603 aaKnown RBP4.13□□□□□ -1.75
VPS35-201ENST00000299138 A0A1W2PNM2 257 aa4.13□□□□□ -1.75
VPS35-201ENST00000299138 USP24Q9UPU5 2620 aa4.13□□□□□ -1.75
VPS35-201ENST00000299138 KRTAP3-3Q9BYR6 98 aa4.13□□□□□ -1.75
VPS35-201ENST00000299138 KRTAP3-2Q9BYR7 98 aa4.13□□□□□ -1.75
VPS35-201ENST00000299138 KRTAP1-1Q07627 177 aa4.12□□□□□ -1.75
VPS35-201ENST00000299138 LINC01558Q9Y6Z2 57 aa4.12□□□□□ -1.75
VPS35-201ENST00000299138 C15orf56Q8N910 161 aa4.12□□□□□ -1.75
VPS35-201ENST00000299138 IGLV7-43P04211 117 aa4.12□□□□□ -1.75
VPS35-201ENST00000299138 IGLV7-46A0A075B6I9 117 aa4.11□□□□□ -1.75
VPS35-201ENST00000299138 H1FX-AS1Q4G0G2 97 aa4.11□□□□□ -1.75
VPS35-201ENST00000299138 CSMD1Q96PZ7 3565 aa4.11□□□□□ -1.75
VPS35-201ENST00000299138 TLN2Q9Y4G6 2542 aa4.11□□□□□ -1.75
VPS35-201ENST00000299138 Q5VV11 94 aa4.1□□□□□ -1.75
VPS35-201ENST00000299138 PSORS1C2Q9UIG4 136 aa4.1□□□□□ -1.75
VPS35-201ENST00000299138 CHD6Q8TD26 2715 aa4.1□□□□□ -1.75
VPS35-201ENST00000299138 PLAC4Q8WY50 150 aa4.1□□□□□ -1.75
VPS35-201ENST00000299138 ABCA2Q9BZC7 2435 aa4.1□□□□□ -1.75
VPS35-201ENST00000299138 CNBPP62633 177 aaKnown RBP4.1□□□□□ -1.75
VPS35-201ENST00000299138 DSPP15924 2871 aaKnown RBP4.1□□□□□ -1.75
VPS35-201ENST00000299138 BOD1L1Q8NFC6 3051 aa4.1□□□□□ -1.75
VPS35-201ENST00000299138 KRTAP4-16G5E9R7 235 aaPredicted RBP4.09□□□□□ -1.75
VPS35-201ENST00000299138 KRTAP26-1Q6PEX3 210 aa4.09□□□□□ -1.75
VPS35-201ENST00000299138 Q8N9P0 234 aaPredicted RBP4.09□□□□□ -1.75
VPS35-201ENST00000299138 IGSF10Q6WRI0 2623 aa4.09□□□□□ -1.76
VPS35-201ENST00000299138 ANAPC11Q9NYG5 84 aa4.08□□□□□ -1.76
VPS35-201ENST00000299138 FASNP49327 2511 aaKnown RBP4.08□□□□□ -1.76
VPS35-201ENST00000299138 ROMO1P60602 79 aa4.07□□□□□ -1.76
VPS35-201ENST00000299138 NDUFAF8A1L188 74 aa4.06□□□□□ -1.76
VPS35-201ENST00000299138 Q8NDZ9 215 aa4.06□□□□□ -1.76
VPS35-201ENST00000299138 COL12A1Q99715 3063 aa4.06□□□□□ -1.76
VPS35-201ENST00000299138 LINC00304Q8N9R0 145 aa4.06□□□□□ -1.76
VPS35-201ENST00000299138 FLNBO75369 2602 aaKnown RBP4.05□□□□□ -1.76
VPS35-201ENST00000299138 KRTAP29-1A8MX34 341 aaPredicted RBP4.05□□□□□ -1.76
VPS35-201ENST00000299138 MTORP42345 2549 aa4.05□□□□□ -1.76
VPS35-201ENST00000299138 HECTD1Q9ULT8 2610 aa4.05□□□□□ -1.76
VPS35-201ENST00000299138 KRTAP24-1Q3LI83 254 aa4.04□□□□□ -1.76
VPS35-201ENST00000299138 HRES1P13985 223 aa4.04□□□□□ -1.76
VPS35-201ENST00000299138 KRTAP10-3P60369 221 aa4.04□□□□□ -1.76
VPS35-201ENST00000299138 F8P00451 2351 aa4.04□□□□□ -1.76
VPS35-201ENST00000299138 DMXL2Q8TDJ6 3036 aa4.04□□□□□ -1.76
VPS35-201ENST00000299138 ACANP16112 2415 aa4.04□□□□□ -1.76
VPS35-201ENST00000299138 SEC61BP60468 96 aaKnown RBP4.04□□□□□ -1.76
VPS35-201ENST00000299138 FLG2Q5D862 2391 aaPredicted RBP4.03□□□□□ -1.76
VPS35-201ENST00000299138 MAST4O15021 2626 aa4.03□□□□□ -1.76
VPS35-201ENST00000299138 HELZ2Q9BYK8 2649 aaKnown RBP4.03□□□□□ -1.76
VPS35-201ENST00000299138 LINC00472Q9H8W2 130 aa4.02□□□□□ -1.77
VPS35-201ENST00000299138 SETD2Q9BYW2 2564 aaPredicted RBP4.02□□□□□ -1.77
VPS35-201ENST00000299138 JMJD1CQ15652 2540 aa4.01□□□□□ -1.77
VPS35-201ENST00000299138 Q6ZR54 194 aa4.01□□□□□ -1.77
VPS35-201ENST00000299138 FLNAP21333 2647 aaKnown RBP4□□□□□ -1.77
VPS35-201ENST00000299138 C20orf166-AS1Q96NR2 134 aa4□□□□□ -1.77
VPS35-201ENST00000299138 CFAP46Q8IYW2 2715 aa3.99□□□□□ -1.77
VPS35-201ENST00000299138 NBDYA0A0U1RRE5 68 aa3.98□□□□□ -1.77
VPS35-201ENST00000299138 MMP24-AS1A0A0U1RRL7 71 aa3.98□□□□□ -1.77
VPS35-201ENST00000299138 ZNF861PO60384 105 aa3.98□□□□□ -1.77
VPS35-201ENST00000299138 VPS13CQ709C8 3753 aa3.98□□□□□ -1.77
VPS35-201ENST00000299138 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.98□□□□□ -1.77
VPS35-201ENST00000299138 CR1P17927 2039 aa3.98□□□□□ -1.77
VPS35-201ENST00000299138 CENPEQ02224 2701 aa3.97□□□□□ -1.77
VPS35-201ENST00000299138 RPL37P61927 97 aaKnown RBP3.97□□□□□ -1.77
VPS35-201ENST00000299138 S4R3F8 94 aa3.97□□□□□ -1.77
VPS35-201ENST00000299138 FLNCQ14315 2725 aa3.97□□□□□ -1.77
VPS35-201ENST00000299138 ITPR3Q14573 2671 aa3.97□□□□□ -1.77
VPS35-201ENST00000299138 FN1P02751 2386 aaKnown RBP3.96□□□□□ -1.77
VPS35-201ENST00000299138 M0R2T5 61 aa3.96□□□□□ -1.77
VPS35-201ENST00000299138 UNC79Q9P2D8 2635 aa3.96□□□□□ -1.78
VPS35-201ENST00000299138 ITPR1Q14643 2758 aa3.96□□□□□ -1.78
VPS35-201ENST00000299138 SMR3BP02814 79 aaPredicted RBP3.96□□□□□ -1.78
VPS35-201ENST00000299138 R4GN34 69 aa3.96□□□□□ -1.78
VPS35-201ENST00000299138 SVEP1Q4LDE5 3571 aa3.95□□□□□ -1.78
VPS35-201ENST00000299138 Q6ZSA8 131 aa3.94□□□□□ -1.78
VPS35-201ENST00000299138 NBPF19A0A087WUL8 3843 aa3.94□□□□□ -1.78
VPS35-201ENST00000299138 KRTAP10-11P60412 298 aa3.94□□□□□ -1.78
VPS35-201ENST00000299138 SPATA8Q6RVD6 105 aa3.94□□□□□ -1.78
VPS35-201ENST00000299138 KRTAP25-1Q3LHN0 102 aa3.94□□□□□ -1.78
VPS35-201ENST00000299138 CRYBG3Q68DQ2 2970 aa3.94□□□□□ -1.78
VPS35-201ENST00000299138 ADGRG4Q8IZF6 3080 aa3.93□□□□□ -1.78
VPS35-201ENST00000299138 ADM2Q7Z4H4 148 aa3.93□□□□□ -1.78
VPS35-201ENST00000299138 UBR5O95071 2799 aaPredicted RBP3.92□□□□□ -1.78
VPS35-201ENST00000299138 A6NN06 94 aa3.92□□□□□ -1.78
VPS35-201ENST00000299138 KALRNO60229 2985 aa3.91□□□□□ -1.78
VPS35-201ENST00000299138 PLAC8Q9NZF1 115 aa3.91□□□□□ -1.78
VPS35-201ENST00000299138 HRNRQ86YZ3 2850 aaPredicted RBP3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms