RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 LINC01556Q5JQF7 62 aa8.24□□□□□ -1.09
SNX1-201ENST00000261889 LINC00208Q96KT6 92 aa8.24□□□□□ -1.09
SNX1-201ENST00000261889 BCE1O60756 84 aa8.24□□□□□ -1.09
SNX1-201ENST00000261889 DYNC2H1Q8NCM8 4307 aaKnown RBP8.24□□□□□ -1.09
SNX1-201ENST00000261889 KRTAP11-1Q8IUC1 163 aa8.24□□□□□ -1.09
SNX1-201ENST00000261889 IGFL1Q6UW32 110 aa8.23□□□□□ -1.09
SNX1-201ENST00000261889 KRTAP4-16G5E9R7 235 aaPredicted RBP8.22□□□□□ -1.09
SNX1-201ENST00000261889 DHRS4-AS1Q9P1J3 65 aa8.21□□□□□ -1.1
SNX1-201ENST00000261889 H3BQ85 93 aa8.21□□□□□ -1.1
SNX1-201ENST00000261889 A8MUN3 132 aa8.2□□□□□ -1.1
SNX1-201ENST00000261889 HCG22E2RYF7 251 aa8.2□□□□□ -1.1
SNX1-201ENST00000261889 TNP2Q05952 138 aa8.2□□□□□ -1.1
SNX1-201ENST00000261889 REG3GQ6UW15 175 aa8.2□□□□□ -1.1
SNX1-201ENST00000261889 DNAH7Q8WXX0 4024 aa8.19□□□□□ -1.1
SNX1-201ENST00000261889 hDV103S1A0JD37 113 aa8.19□□□□□ -1.1
SNX1-201ENST00000261889 PHF5AQ7RTV0 110 aaKnown RBP8.19□□□□□ -1.1
SNX1-201ENST00000261889 KRTAP1-5Q9BYS1 174 aa8.19□□□□□ -1.1
SNX1-201ENST00000261889 C1orf195Q5TG92 126 aa8.19□□□□□ -1.1
SNX1-201ENST00000261889 TGP01266 2768 aa8.17□□□□□ -1.1
SNX1-201ENST00000261889 H0Y9J4 135 aa8.15□□□□□ -1.1
SNX1-201ENST00000261889 UBE2AP49459 152 aa8.15□□□□□ -1.1
SNX1-201ENST00000261889 PCOTHQ58A44 107 aa8.15□□□□□ -1.1
SNX1-201ENST00000261889 TRAV22A0A0B4J277 110 aa8.15□□□□□ -1.1
SNX1-201ENST00000261889 DNAH10OSP0CZ25 163 aa8.14□□□□□ -1.11
SNX1-201ENST00000261889 MEGF8Q7Z7M0 2845 aa8.14□□□□□ -1.11
SNX1-201ENST00000261889 K7EIL1 84 aa8.14□□□□□ -1.11
SNX1-201ENST00000261889 ATP5EP56381 51 aaPredicted RBP8.14□□□□□ -1.11
SNX1-201ENST00000261889 SPRR1AP35321 89 aa8.12□□□□□ -1.11
SNX1-201ENST00000261889 ANAPC11Q9NYG5 84 aa8.12□□□□□ -1.11
SNX1-201ENST00000261889 IGLV9-49A0A0B4J1Y8 123 aa8.11□□□□□ -1.11
SNX1-201ENST00000261889 SPRR4Q96PI1 79 aa8.11□□□□□ -1.11
SNX1-201ENST00000261889 DNAH1Q9P2D7 4330 aa8.11□□□□□ -1.11
SNX1-201ENST00000261889 FRAS1Q86XX4 4008 aa8.1□□□□□ -1.11
SNX1-201ENST00000261889 H0Y9P7 68 aa8.1□□□□□ -1.11
SNX1-201ENST00000261889 PANO1I0J062 215 aa8.1□□□□□ -1.11
SNX1-201ENST00000261889 ZCCHC13Q8WW36 166 aaKnown RBP8.1□□□□□ -1.11
SNX1-201ENST00000261889 SPTSSBQ8NFR3 76 aa8.09□□□□□ -1.11
SNX1-201ENST00000261889 H3BNG1 76 aa8.09□□□□□ -1.11
SNX1-201ENST00000261889 CASC2Q6XLA1 102 aa8.09□□□□□ -1.11
SNX1-201ENST00000261889 MP68P56378 58 aa8.08□□□□□ -1.12
SNX1-201ENST00000261889 CNBPP62633 177 aaKnown RBP8.06□□□□□ -1.12
SNX1-201ENST00000261889 NDUFS5O43920 106 aa8.05□□□□□ -1.12
SNX1-201ENST00000261889 CHKB-CPT1BH3BT56 60 aa8.05□□□□□ -1.12
SNX1-201ENST00000261889 TLX1NBP0CAT3 122 aa8.05□□□□□ -1.12
SNX1-201ENST00000261889 PRR15LQ9BU68 103 aa8.05□□□□□ -1.12
SNX1-201ENST00000261889 FBN3Q75N90 2809 aa8.05□□□□□ -1.12
SNX1-201ENST00000261889 UBE2DNLQ8IWF7 75 aa8.05□□□□□ -1.12
SNX1-201ENST00000261889 B9D2Q9BPU9 175 aa8.04□□□□□ -1.12
SNX1-201ENST00000261889 V9GYY9 64 aa8.04□□□□□ -1.12
SNX1-201ENST00000261889 PRR15Q8IV56 129 aa8.02□□□□□ -1.12
SNX1-201ENST00000261889 LCE6AA0A183 80 aa8.01□□□□□ -1.13
SNX1-201ENST00000261889 PLECQ15149 4684 aaKnown RBP8.01□□□□□ -1.13
SNX1-201ENST00000261889 PLA2G2DQ9UNK4 145 aa7.99□□□□□ -1.13
SNX1-201ENST00000261889 IGLV5-37A0A075B6J1 123 aa7.99□□□□□ -1.13
SNX1-201ENST00000261889 SPAG11AQ6PDA7 123 aa7.99□□□□□ -1.13
SNX1-201ENST00000261889 SPINK6Q6UWN8 80 aa7.99□□□□□ -1.13
SNX1-201ENST00000261889 IGHV6-1A0A0B4J1U7 121 aa7.98□□□□□ -1.13
SNX1-201ENST00000261889 Q5VV11 94 aa7.98□□□□□ -1.13
SNX1-201ENST00000261889 PMAIP1Q13794 54 aa7.98□□□□□ -1.13
SNX1-201ENST00000261889 C16orf90A8MZG2 172 aa7.97□□□□□ -1.13
SNX1-201ENST00000261889 Q1T7F1 81 aa7.97□□□□□ -1.13
SNX1-201ENST00000261889 STARD9Q9P2P6 4700 aa7.97□□□□□ -1.13
SNX1-201ENST00000261889 KRTAP29-1A8MX34 341 aaPredicted RBP7.97□□□□□ -1.13
SNX1-201ENST00000261889 A0A087X002 238 aa7.96□□□□□ -1.13
SNX1-201ENST00000261889 SEC61GP60059 68 aa7.96□□□□□ -1.13
SNX1-201ENST00000261889 NOTCH2NLQ7Z3S9 236 aa7.96□□□□□ -1.13
SNX1-201ENST00000261889 RETNLBQ9BQ08 111 aa7.96□□□□□ -1.13
SNX1-201ENST00000261889 DNAH6Q9C0G6 4158 aa7.93□□□□□ -1.14
SNX1-201ENST00000261889 A6NED7 52 aa7.93□□□□□ -1.14
SNX1-201ENST00000261889 A8MWP4 228 aa7.93□□□□□ -1.14
SNX1-201ENST00000261889 COA5Q86WW8 74 aa7.93□□□□□ -1.14
SNX1-201ENST00000261889 Q8N9P0 234 aaPredicted RBP7.93□□□□□ -1.14
SNX1-201ENST00000261889 LINC00472Q9H8W2 130 aa7.93□□□□□ -1.14
SNX1-201ENST00000261889 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.93□□□□□ -1.14
SNX1-201ENST00000261889 VPS13DQ5THJ4 4388 aa7.92□□□□□ -1.14
SNX1-201ENST00000261889 CD164Q04900 197 aa7.91□□□□□ -1.14
SNX1-201ENST00000261889 MMP24-AS1A0A0U1RRL7 71 aa7.91□□□□□ -1.14
SNX1-201ENST00000261889 CYP4F30PQ9H0H9 118 aa7.91□□□□□ -1.14
SNX1-201ENST00000261889 F8WDY8 70 aa7.9□□□□□ -1.14
SNX1-201ENST00000261889 KMT2AQ03164 3969 aa7.9□□□□□ -1.15
SNX1-201ENST00000261889 NDUFB1O75438 58 aa7.9□□□□□ -1.15
SNX1-201ENST00000261889 MOBPQ13875 183 aa7.89□□□□□ -1.15
SNX1-201ENST00000261889 LCA10Q71F78 164 aa7.88□□□□□ -1.15
SNX1-201ENST00000261889 A0A1B0GW54 56 aa7.87□□□□□ -1.15
SNX1-201ENST00000261889 DNAH8Q96JB1 4490 aa7.86□□□□□ -1.15
SNX1-201ENST00000261889 ALMS1Q8TCU4 4167 aa7.85□□□□□ -1.15
SNX1-201ENST00000261889 PRR26Q8N8Z3 221 aa7.85□□□□□ -1.15
SNX1-201ENST00000261889 C9orf163Q8N9P6 203 aa7.84□□□□□ -1.16
SNX1-201ENST00000261889 IGLV8-61A0A075B6I0 122 aa7.82□□□□□ -1.16
SNX1-201ENST00000261889 SPINK7P58062 85 aa7.82□□□□□ -1.16
SNX1-201ENST00000261889 Q96NJ1 140 aa7.81□□□□□ -1.16
SNX1-201ENST00000261889 C8orf17Q9NRJ1 99 aa7.8□□□□□ -1.16
SNX1-201ENST00000261889 DNAH17Q9UFH2 4485 aa7.79□□□□□ -1.16
SNX1-201ENST00000261889 CIRBP-AS1Q8TBR5 109 aa7.79□□□□□ -1.16
SNX1-201ENST00000261889 CDK2AP2O75956 126 aa7.78□□□□□ -1.16
SNX1-201ENST00000261889 Q5W150 140 aa7.78□□□□□ -1.16
SNX1-201ENST00000261889 DNAH2Q9P225 4427 aa7.78□□□□□ -1.16
SNX1-201ENST00000261889 APLNQ9ULZ1 77 aa7.77□□□□□ -1.17
SNX1-201ENST00000261889 HRES1P13985 223 aa7.77□□□□□ -1.17
SNX1-201ENST00000261889 PSORS1C2Q9UIG4 136 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 137 ms