RNA–Protein interactions for RNA: ENST00000260653.4

SIX3-201, Transcript of SIX homeobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX3, Length 2,523 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3-201ENST00000260653 SMCR5Q8TEV8 140 aa13.94□□□□□ -0.18
SIX3-201ENST00000260653 ST20-AS1Q8NBB2 130 aa13.93□□□□□ -0.18
SIX3-201ENST00000260653 LINC01547P58512 204 aaPredicted RBP13.92□□□□□ -0.18
SIX3-201ENST00000260653 RBM3P98179 157 aaKnown RBP13.91□□□□□ -0.18
SIX3-201ENST00000260653 Q8N377 158 aa13.91□□□□□ -0.18
SIX3-201ENST00000260653 PKD1P98161 4303 aa13.9□□□□□ -0.18
SIX3-201ENST00000260653 DNAH8Q96JB1 4490 aa13.89□□□□□ -0.19
SIX3-201ENST00000260653 PLAC8Q9NZF1 115 aa13.89□□□□□ -0.19
SIX3-201ENST00000260653 LCE6AA0A183 80 aa13.88□□□□□ -0.19
SIX3-201ENST00000260653 BRK1Q8WUW1 75 aa13.88□□□□□ -0.19
SIX3-201ENST00000260653 HIGD2AQ9BW72 106 aa13.88□□□□□ -0.19
SIX3-201ENST00000260653 SRRM2Q9UQ35 2752 aaKnown RBP13.87□□□□□ -0.19
SIX3-201ENST00000260653 ACYP1P07311 99 aa13.87□□□□□ -0.19
SIX3-201ENST00000260653 CCKP06307 115 aa13.86□□□□□ -0.19
SIX3-201ENST00000260653 IGLV5-48A0A075B6I7 105 aa13.85□□□□□ -0.19
SIX3-201ENST00000260653 PMAIP1Q13794 54 aa13.85□□□□□ -0.19
SIX3-201ENST00000260653 CD164Q04900 197 aa13.85□□□□□ -0.19
SIX3-201ENST00000260653 BCE1O60756 84 aa13.84□□□□□ -0.19
SIX3-201ENST00000260653 Q6ZQT0 140 aa13.84□□□□□ -0.19
SIX3-201ENST00000260653 UBE2AP49459 152 aa13.83□□□□□ -0.2
SIX3-201ENST00000260653 H0Y9J4 135 aa13.83□□□□□ -0.2
SIX3-201ENST00000260653 FAM30AQ9NZY2 134 aa13.83□□□□□ -0.2
SIX3-201ENST00000260653 LOC110117498A0A087WWA1 95 aa13.82□□□□□ -0.2
SIX3-201ENST00000260653 ATOX1O00244 68 aa13.82□□□□□ -0.2
SIX3-201ENST00000260653 TRBV7-4A0A0J9YYF1 115 aa13.8□□□□□ -0.2
SIX3-201ENST00000260653 KRTAP13-1Q8IUC0 172 aa13.79□□□□□ -0.2
SIX3-201ENST00000260653 KRTAP10-1P60331 282 aa13.78□□□□□ -0.2
SIX3-201ENST00000260653 LINC00846Q9NV44 126 aa13.78□□□□□ -0.2
SIX3-201ENST00000260653 PSORS1C2Q9UIG4 136 aa13.78□□□□□ -0.2
SIX3-201ENST00000260653 CIRBP-AS1Q8TBR5 109 aa13.75□□□□□ -0.21
SIX3-201ENST00000260653 PDE6GP18545 87 aa13.74□□□□□ -0.21
SIX3-201ENST00000260653 HIST1H4AP62805 103 aaKnown RBP13.74□□□□□ -0.21
SIX3-201ENST00000260653 KMT2CQ8NEZ4 4911 aaKnown RBP13.74□□□□□ -0.21
SIX3-201ENST00000260653 Q6ZSA8 131 aa13.73□□□□□ -0.21
SIX3-201ENST00000260653 SMIM29Q86T20 159 aa13.73□□□□□ -0.21
SIX3-201ENST00000260653 RYR2Q92736 4967 aa13.72□□□□□ -0.21
SIX3-201ENST00000260653 PKHD1P08F94 4074 aa13.72□□□□□ -0.21
SIX3-201ENST00000260653 HAMPP81172 84 aa13.71□□□□□ -0.21
SIX3-201ENST00000260653 SCXQ7RTU7 201 aa13.71□□□□□ -0.21
SIX3-201ENST00000260653 C1orf137Q5JT78 98 aa13.7□□□□□ -0.22
SIX3-201ENST00000260653 LINC00643Q86TS7 51 aa13.7□□□□□ -0.22
SIX3-201ENST00000260653 SERP1Q9Y6X1 66 aa13.7□□□□□ -0.22
SIX3-201ENST00000260653 SERP2Q8N6R1 65 aa13.69□□□□□ -0.22
SIX3-201ENST00000260653 FP248Q71RG6 208 aaPredicted RBP13.68□□□□□ -0.22
SIX3-201ENST00000260653 SMIM26A0A096LP01 95 aa13.66□□□□□ -0.22
SIX3-201ENST00000260653 F8WEM9 126 aa13.63□□□□□ -0.23
SIX3-201ENST00000260653 SPRR1BP22528 89 aa13.63□□□□□ -0.23
SIX3-201ENST00000260653 LRP1BQ9NZR2 4599 aa13.61□□□□□ -0.23
SIX3-201ENST00000260653 ZNF861PO60384 105 aa13.61□□□□□ -0.23
SIX3-201ENST00000260653 UBL5Q9BZL1 73 aa13.59□□□□□ -0.23
SIX3-201ENST00000260653 A0A0G2JQZ4 141 aa13.58□□□□□ -0.23
SIX3-201ENST00000260653 A0A1W2PNM2 257 aa13.58□□□□□ -0.23
SIX3-201ENST00000260653 IGLV7-43P04211 117 aa13.58□□□□□ -0.24
SIX3-201ENST00000260653 SPRR4Q96PI1 79 aa13.57□□□□□ -0.24
SIX3-201ENST00000260653 A0A1B0GVY2 172 aa13.56□□□□□ -0.24
SIX3-201ENST00000260653 IGKV3D-7A0A0C4DH55 119 aa13.56□□□□□ -0.24
SIX3-201ENST00000260653 Q6JHZ5 121 aa13.56□□□□□ -0.24
SIX3-201ENST00000260653 IGLV8-61A0A075B6I0 122 aa13.55□□□□□ -0.24
SIX3-201ENST00000260653 Q6ZVQ6 151 aa13.55□□□□□ -0.24
SIX3-201ENST00000260653 IGFL1Q6UW32 110 aa13.55□□□□□ -0.24
SIX3-201ENST00000260653 Q8NBF4 154 aa13.54□□□□□ -0.24
SIX3-201ENST00000260653 DYNC1H1Q14204 4646 aaKnown RBP13.52□□□□□ -0.25
SIX3-201ENST00000260653 PRR15Q8IV56 129 aa13.51□□□□□ -0.25
SIX3-201ENST00000260653 ZNF706Q9Y5V0 76 aaPredicted RBP13.51□□□□□ -0.25
SIX3-201ENST00000260653 H3BS24 57 aa13.5□□□□□ -0.25
SIX3-201ENST00000260653 LINC00483Q53H64 154 aa13.5□□□□□ -0.25
SIX3-201ENST00000260653 ANAPC11Q9NYG5 84 aa13.48□□□□□ -0.25
SIX3-201ENST00000260653 VPS13BQ7Z7G8 4022 aa13.47□□□□□ -0.25
SIX3-201ENST00000260653 ATP5EP2Q5VTU8 51 aa13.46□□□□□ -0.25
SIX3-201ENST00000260653 IGLV9-49A0A0B4J1Y8 123 aa13.46□□□□□ -0.26
SIX3-201ENST00000260653 A0A1B0GW54 56 aa13.44□□□□□ -0.26
SIX3-201ENST00000260653 NREPQ16612 68 aa13.43□□□□□ -0.26
SIX3-201ENST00000260653 RYR3Q15413 4870 aa13.4□□□□□ -0.26
SIX3-201ENST00000260653 A0A087WVE0 104 aa13.39□□□□□ -0.27
SIX3-201ENST00000260653 RBM12B-AS1Q9P1G2 102 aa13.38□□□□□ -0.27
SIX3-201ENST00000260653 A0A087WSZ3 146 aa13.36□□□□□ -0.27
SIX3-201ENST00000260653 CXCL6P80162 114 aa13.36□□□□□ -0.27
SIX3-201ENST00000260653 MOBPQ13875 183 aa13.36□□□□□ -0.27
SIX3-201ENST00000260653 APOBP04114 4563 aaKnown RBP13.36□□□□□ -0.27
SIX3-201ENST00000260653 H7BZZ5 65 aa13.36□□□□□ -0.27
SIX3-201ENST00000260653 C20orf197Q8N268 126 aa13.33□□□□□ -0.28
SIX3-201ENST00000260653 SMR3BP02814 79 aaPredicted RBP13.31□□□□□ -0.28
SIX3-201ENST00000260653 BPY2O14599 106 aa13.3□□□□□ -0.28
SIX3-201ENST00000260653 RPL37AP61513 92 aaKnown RBP13.29□□□□□ -0.28
SIX3-201ENST00000260653 Q8N9L7 120 aa13.28□□□□□ -0.28
SIX3-201ENST00000260653 MPLKIPQ8TAP9 179 aa13.27□□□□□ -0.29
SIX3-201ENST00000260653 FAT1Q14517 4588 aa13.24□□□□□ -0.29
SIX3-201ENST00000260653 A0A087X002 238 aa13.23□□□□□ -0.29
SIX3-201ENST00000260653 DEFB116Q30KQ4 102 aa13.22□□□□□ -0.29
SIX3-201ENST00000260653 KRTAP1-4P0C5Y4 121 aa13.21□□□□□ -0.29
SIX3-201ENST00000260653 IGKV4-1P06312 121 aa13.2□□□□□ -0.3
SIX3-201ENST00000260653 DSCR10P59022 87 aa13.18□□□□□ -0.3
SIX3-201ENST00000260653 KRTAP13-2Q52LG2 175 aa13.17□□□□□ -0.3
SIX3-201ENST00000260653 FAM229BQ4G0N7 80 aa13.16□□□□□ -0.3
SIX3-201ENST00000260653 KTN1-AS1Q86SY8 53 aa13.16□□□□□ -0.3
SIX3-201ENST00000260653 ATP5EP56381 51 aaPredicted RBP13.14□□□□□ -0.31
SIX3-201ENST00000260653 KLKP1Q107X0 134 aa13.14□□□□□ -0.31
SIX3-201ENST00000260653 SPINK6Q6UWN8 80 aa13.14□□□□□ -0.31
SIX3-201ENST00000260653 SSBP3-AS1Q7Z2R9 100 aa13.14□□□□□ -0.31
SIX3-201ENST00000260653 LINC00472Q9H8W2 130 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms