RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 UBL5Q9BZL1 73 aa14.02□□□□□ -0.16
CDX1-201ENST00000231656 H0Y9J4 135 aa14.01□□□□□ -0.17
CDX1-201ENST00000231656 LRP1BQ9NZR2 4599 aa14□□□□□ -0.17
CDX1-201ENST00000231656 ATP5EP2Q5VTU8 51 aa13.98□□□□□ -0.17
CDX1-201ENST00000231656 SMIM29Q86T20 159 aa13.97□□□□□ -0.17
CDX1-201ENST00000231656 CIRBP-AS1Q8TBR5 109 aa13.97□□□□□ -0.17
CDX1-201ENST00000231656 HIGD2AQ9BW72 106 aa13.97□□□□□ -0.17
CDX1-201ENST00000231656 Q6ZVQ6 151 aa13.96□□□□□ -0.18
CDX1-201ENST00000231656 DYNC1H1Q14204 4646 aaKnown RBP13.95□□□□□ -0.18
CDX1-201ENST00000231656 SCXQ7RTU7 201 aa13.95□□□□□ -0.18
CDX1-201ENST00000231656 ANAPC13Q9BS18 74 aa13.94□□□□□ -0.18
CDX1-201ENST00000231656 FAM236AA0A1B0GUQ0 79 aa13.94□□□□□ -0.18
CDX1-201ENST00000231656 FAM236BA0A1B0GV22 79 aa13.94□□□□□ -0.18
CDX1-201ENST00000231656 BCE1O60756 84 aa13.94□□□□□ -0.18
CDX1-201ENST00000231656 KRTAP13-1Q8IUC0 172 aa13.92□□□□□ -0.18
CDX1-201ENST00000231656 HAMPP81172 84 aa13.91□□□□□ -0.18
CDX1-201ENST00000231656 UBE2AP49459 152 aa13.91□□□□□ -0.18
CDX1-201ENST00000231656 C1orf137Q5JT78 98 aa13.9□□□□□ -0.18
CDX1-201ENST00000231656 A0A1W2PNM2 257 aa13.88□□□□□ -0.19
CDX1-201ENST00000231656 HIST1H4AP62805 103 aaKnown RBP13.88□□□□□ -0.19
CDX1-201ENST00000231656 SPRR1BP22528 89 aa13.86□□□□□ -0.19
CDX1-201ENST00000231656 A0A087WVE0 104 aa13.85□□□□□ -0.19
CDX1-201ENST00000231656 F8WEM9 126 aa13.84□□□□□ -0.19
CDX1-201ENST00000231656 Q8NBF4 154 aa13.84□□□□□ -0.19
CDX1-201ENST00000231656 A0A1B0GW54 56 aa13.83□□□□□ -0.19
CDX1-201ENST00000231656 IGLV8-61A0A075B6I0 122 aa13.83□□□□□ -0.2
CDX1-201ENST00000231656 CXCL6P80162 114 aa13.83□□□□□ -0.2
CDX1-201ENST00000231656 PSORS1C2Q9UIG4 136 aa13.83□□□□□ -0.2
CDX1-201ENST00000231656 APOBP04114 4563 aaKnown RBP13.81□□□□□ -0.2
CDX1-201ENST00000231656 SPRR4Q96PI1 79 aa13.81□□□□□ -0.2
CDX1-201ENST00000231656 SRRM2Q9UQ35 2752 aaKnown RBP13.79□□□□□ -0.2
CDX1-201ENST00000231656 IGFL1Q6UW32 110 aa13.78□□□□□ -0.2
CDX1-201ENST00000231656 NREPQ16612 68 aa13.77□□□□□ -0.21
CDX1-201ENST00000231656 A0A0G2JQZ4 141 aa13.74□□□□□ -0.21
CDX1-201ENST00000231656 ATOX1O00244 68 aa13.73□□□□□ -0.21
CDX1-201ENST00000231656 CRYGAP11844 174 aa13.73□□□□□ -0.21
CDX1-201ENST00000231656 VPS13BQ7Z7G8 4022 aa13.72□□□□□ -0.21
CDX1-201ENST00000231656 CCDC179H3BU77 68 aa13.7□□□□□ -0.22
CDX1-201ENST00000231656 EPPK1P58107 5090 aaKnown RBP13.67□□□□□ -0.22
CDX1-201ENST00000231656 ZNF861PO60384 105 aa13.66□□□□□ -0.22
CDX1-201ENST00000231656 IGLV7-43P04211 117 aa13.66□□□□□ -0.22
CDX1-201ENST00000231656 LINC00483Q53H64 154 aa13.66□□□□□ -0.22
CDX1-201ENST00000231656 BPY2O14599 106 aa13.66□□□□□ -0.22
CDX1-201ENST00000231656 SMR3BP02814 79 aaPredicted RBP13.65□□□□□ -0.22
CDX1-201ENST00000231656 ZNF706Q9Y5V0 76 aaPredicted RBP13.63□□□□□ -0.23
CDX1-201ENST00000231656 IGKV4-1P06312 121 aa13.61□□□□□ -0.23
CDX1-201ENST00000231656 Q8N9L7 120 aa13.6□□□□□ -0.23
CDX1-201ENST00000231656 FAT1Q14517 4588 aa13.6□□□□□ -0.23
CDX1-201ENST00000231656 CDK2AP2O75956 126 aa13.59□□□□□ -0.23
CDX1-201ENST00000231656 COX7CP15954 63 aa13.59□□□□□ -0.23
CDX1-201ENST00000231656 RPL37AP61513 92 aaKnown RBP13.58□□□□□ -0.23
CDX1-201ENST00000231656 A0A087WSZ3 146 aa13.58□□□□□ -0.24
CDX1-201ENST00000231656 HSPG2P98160 4391 aa13.58□□□□□ -0.24
CDX1-201ENST00000231656 UQCRQO14949 82 aa13.57□□□□□ -0.24
CDX1-201ENST00000231656 SERP2Q8N6R1 65 aa13.57□□□□□ -0.24
CDX1-201ENST00000231656 IGLV9-49A0A0B4J1Y8 123 aa13.53□□□□□ -0.24
CDX1-201ENST00000231656 DSCR10P59022 87 aa13.53□□□□□ -0.24
CDX1-201ENST00000231656 C9orf153Q5TBE3 101 aa13.52□□□□□ -0.25
CDX1-201ENST00000231656 RYR1P21817 5038 aa13.5□□□□□ -0.25
CDX1-201ENST00000231656 ANAPC11Q9NYG5 84 aa13.49□□□□□ -0.25
CDX1-201ENST00000231656 KRTAP10-4P60372 401 aaPredicted RBP13.48□□□□□ -0.25
CDX1-201ENST00000231656 KIAA1109Q2LD37 5005 aa13.46□□□□□ -0.25
CDX1-201ENST00000231656 MOBPQ13875 183 aa13.45□□□□□ -0.26
CDX1-201ENST00000231656 TRAV7A0A075B6U4 112 aa13.44□□□□□ -0.26
CDX1-201ENST00000231656 K7EQZ3 153 aa13.44□□□□□ -0.26
CDX1-201ENST00000231656 SMIM20Q8N5G0 67 aa13.44□□□□□ -0.26
CDX1-201ENST00000231656 DEFB116Q30KQ4 102 aa13.43□□□□□ -0.26
CDX1-201ENST00000231656 FAM229AH3BQW9 127 aa13.43□□□□□ -0.26
CDX1-201ENST00000231656 LINC00472Q9H8W2 130 aa13.42□□□□□ -0.26
CDX1-201ENST00000231656 SPINK6Q6UWN8 80 aa13.4□□□□□ -0.26
CDX1-201ENST00000231656 PLA2G1BP04054 148 aaKnown RBP13.4□□□□□ -0.26
CDX1-201ENST00000231656 Q5VSD8 79 aa13.37□□□□□ -0.27
CDX1-201ENST00000231656 KRTAP17-1Q9BYP8 105 aa13.35□□□□□ -0.27
CDX1-201ENST00000231656 HRCT1Q6UXD1 115 aa13.34□□□□□ -0.27
CDX1-201ENST00000231656 CYSTM1Q9H1C7 97 aa13.33□□□□□ -0.28
CDX1-201ENST00000231656 KRTAP1-4P0C5Y4 121 aa13.32□□□□□ -0.28
CDX1-201ENST00000231656 OCR1Q9BZK8 76 aa13.32□□□□□ -0.28
CDX1-201ENST00000231656 Q96NJ1 140 aa13.31□□□□□ -0.28
CDX1-201ENST00000231656 HCG22E2RYF7 251 aa13.3□□□□□ -0.28
CDX1-201ENST00000231656 A8MWP4 228 aa13.29□□□□□ -0.28
CDX1-201ENST00000231656 Q8N1X5 172 aa13.29□□□□□ -0.28
CDX1-201ENST00000231656 SS18L2Q9UHA2 77 aa13.29□□□□□ -0.28
CDX1-201ENST00000231656 PKHD1L1Q86WI1 4243 aa13.29□□□□□ -0.28
CDX1-201ENST00000231656 J3KT08 172 aa13.28□□□□□ -0.28
CDX1-201ENST00000231656 PRR15Q8IV56 129 aa13.27□□□□□ -0.28
CDX1-201ENST00000231656 C20orf197Q8N268 126 aa13.27□□□□□ -0.28
CDX1-201ENST00000231656 FAM229BQ4G0N7 80 aa13.27□□□□□ -0.29
CDX1-201ENST00000231656 A0A087X002 238 aa13.26□□□□□ -0.29
CDX1-201ENST00000231656 SSBP3-AS1Q7Z2R9 100 aa13.26□□□□□ -0.29
CDX1-201ENST00000231656 CD164Q04900 197 aa13.22□□□□□ -0.29
CDX1-201ENST00000231656 BIRC6Q9NR09 4857 aa13.21□□□□□ -0.29
CDX1-201ENST00000231656 KRTAP13-2Q52LG2 175 aa13.21□□□□□ -0.29
CDX1-201ENST00000231656 KRTAP29-1A8MX34 341 aaPredicted RBP13.2□□□□□ -0.3
CDX1-201ENST00000231656 KLKP1Q107X0 134 aa13.2□□□□□ -0.3
CDX1-201ENST00000231656 WFDC13Q8IUB5 93 aa13.2□□□□□ -0.3
CDX1-201ENST00000231656 NDUFB1O75438 58 aa13.15□□□□□ -0.31
CDX1-201ENST00000231656 SNURFQ9Y675 71 aa13.15□□□□□ -0.31
CDX1-201ENST00000231656 CASC2Q6XLA1 102 aa13.14□□□□□ -0.31
CDX1-201ENST00000231656 TMEM254Q8TBM7 123 aa13.14□□□□□ -0.31
CDX1-201ENST00000231656 PRR26Q8N8Z3 221 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms