RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Ndufc2Q9CQ54 120 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Tcf24V9GWT9 166 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 YrdcQ3U5F4 280 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Znf260Q62513 407 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 3110018I06RikQ9CXS0 120 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 SbpP15501 199 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Jsrp1Q3MI48 332 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Q8VC23 124 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 RhohQ9D3G9 191 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 PdpnQ62011 172 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 P01638 115 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Timm21Q8CCM6 249 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Myod1P10085 318 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Ube2wQ8VDW4 151 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 H2-DMb1P35737 261 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Defb4P82019 63 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Csrp2P97314 193 aaKnown RBP13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Pex7P97865 318 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 MlanaQ2TA50 113 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 PmvkQ9D1G2 192 aa13.66□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Cela3bQ9CQ52 269 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Rita1Q9D1H0 253 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Plpp2Q9DAX2 276 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm20517G3UVU6 152 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Iglc2P01844 104 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm10767Q3TQP0 103 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Olfr984Q8VFN1 314 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm29666A0A087WQ99 126 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Foxi3E0CZH3 425 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Tcl1b2P56841 117 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Olfr1195Q8VG21 308 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Notch4P31695 1964 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Ighv1-49A0A0A6YWX2 117 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 ApohQ01339 345 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 RetnlgQ8K426 117 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Oxld1Q9CR10 201 aa13.65□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Ighv1-7A0A075B5T7 117 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Gemin7Q9CWY4 129 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Clec5aQ9R007 190 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Nav2E9Q842 2432 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Smad7O35253 426 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Bcl6bO88282 474 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Timm23Q9WTQ8 209 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Susd3Q9D176 269 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Gm20219A0A1B0GRQ3 87 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Zfp248Q640N4 576 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Supt4h1aP63271 117 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Ang6Q5GAN0 147 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Tmem219Q9D123 240 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 HampQ9EQ21 83 aa13.64□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 MsmbO08540 113 aa13.63□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Egr1P08046 533 aa13.63□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Igkv6-14A0A140T8P1 115 aa13.63□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Igkv1-99F6XWB2 120 aa13.63□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Mrpl53Q9D1H8 118 aaKnown RBP13.63□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Ighv5-6A0A075B5Q0 117 aa13.63□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Cdcp2Q8BQH6 427 aa13.63□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Timm10bQ9WV96 100 aa13.63□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 SlpiP97430 131 aa13.63□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 P18532 116 aa13.63□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Pkd1l2Q7TN88 2461 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Zg16Q8K0C5 167 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Igkv13-84A0A140T8N3 115 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 P01812 117 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Gm12845A0A0N4SUM5 588 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Pax9P47242 342 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Ca5aP23589 299 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Insl3O09107 122 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Gm28269A0A087WSG3 125 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 BC049762Q8C601 163 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Rchy1Q9CR50 261 aa13.62□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Mpv17l2Q8VIK2 200 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 SostQ99P68 211 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 PigyP0C1P0 71 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Pate2Q3UW31 111 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Olfr745Q7TRL9 328 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 March3Q8BRX9 218 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Ighv5-12-4A0A0A6YWG4 117 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Lage3Q9CR70 148 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Igkv4-53A0A0G2JFC6 119 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Socs3O35718 225 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Pnrc2Q9CR73 140 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Trav2Q5R1I9 109 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 AgerQ62151 402 aa13.61□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Rpl32P62911 135 aaKnown RBP13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 EpopQ7TNS8 369 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Igkv4-90A0A075B5L3 117 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Lrcol1Q3URS3 161 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Gm6871L7N248 545 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Wipf3P0C7L0 485 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Q4KKZ1 196 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 CrygsO35486 178 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Hs3st6Q5GFD5 342 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 NmbQ9CR53 121 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 TectaO08523 2155 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Cox11Q6P8I6 275 aa13.6□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Znf22Q9ERU3 237 aa13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Gm10020E9QAZ2 204 aa13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 P04219 140 aa13.59□□□□□ -0.23
Ccdc88a-201ENSMUST00000040182 Trav7d-3Q5R1I1 112 aa13.59□□□□□ -0.23
Retrieved 100 of 22,080 RNA–protein pairs in 47.2 ms