RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 KRTDAPP60985 99 aa7.09□□□□□ -1.27
TRIM28-212ENST00000597995 KRTAP13-3Q3SY46 172 aa7.09□□□□□ -1.27
TRIM28-212ENST00000597995 ASB16-AS1Q495Z4 193 aa7.09□□□□□ -1.27
TRIM28-212ENST00000597995 LINC01545Q5VT33 79 aa7.09□□□□□ -1.27
TRIM28-212ENST00000597995 C20orf202A1L168 122 aa7.08□□□□□ -1.28
TRIM28-212ENST00000597995 NDUFC2O95298 119 aa7.08□□□□□ -1.28
TRIM28-212ENST00000597995 IGLV6-57P01721 117 aa7.08□□□□□ -1.28
TRIM28-212ENST00000597995 NPC2P61916 151 aa7.08□□□□□ -1.28
TRIM28-212ENST00000597995 LITAFQ99732 161 aa7.08□□□□□ -1.28
TRIM28-212ENST00000597995 SPANXB1Q9NS25 103 aaPredicted RBP7.08□□□□□ -1.28
TRIM28-212ENST00000597995 LINC01547P58512 204 aaPredicted RBP7.07□□□□□ -1.28
TRIM28-212ENST00000597995 PET117Q6UWS5 81 aa7.07□□□□□ -1.28
TRIM28-212ENST00000597995 Q9BRP9 147 aa7.07□□□□□ -1.28
TRIM28-212ENST00000597995 SPINK1P00995 79 aa7.06□□□□□ -1.28
TRIM28-212ENST00000597995 C3orf79P0CE67 100 aa7.06□□□□□ -1.28
TRIM28-212ENST00000597995 LINC00483Q53H64 154 aa7.06□□□□□ -1.28
TRIM28-212ENST00000597995 COA6Q5JTJ3 125 aaKnown RBP7.06□□□□□ -1.28
TRIM28-212ENST00000597995 TTTY13Q9BZ97 58 aa7.06□□□□□ -1.28
TRIM28-212ENST00000597995 S100A1P23297 94 aa7.05□□□□□ -1.28
TRIM28-212ENST00000597995 SEC61BP60468 96 aaKnown RBP7.05□□□□□ -1.28
TRIM28-212ENST00000597995 S100A7L2Q5SY68 101 aa7.05□□□□□ -1.28
TRIM28-212ENST00000597995 LCE2DQ5TA82 110 aaPredicted RBP7.05□□□□□ -1.28
TRIM28-212ENST00000597995 Q8NBF4 154 aa7.05□□□□□ -1.28
TRIM28-212ENST00000597995 Q6ZRX8 168 aa7.04□□□□□ -1.28
TRIM28-212ENST00000597995 TRAV23DV6A0A075B6W5 121 aa7.03□□□□□ -1.28
TRIM28-212ENST00000597995 ZNF815PA8K554 130 aa7.03□□□□□ -1.28
TRIM28-212ENST00000597995 S100A2P29034 98 aa7.03□□□□□ -1.28
TRIM28-212ENST00000597995 GAGE2AQ6NT46 116 aa7.03□□□□□ -1.28
TRIM28-212ENST00000597995 LINC00308Q8TCZ7 52 aa7.03□□□□□ -1.28
TRIM28-212ENST00000597995 TIMM17BO60830 172 aa7.02□□□□□ -1.29
TRIM28-212ENST00000597995 KRTAP4-1Q9BYQ7 146 aa7.02□□□□□ -1.29
TRIM28-212ENST00000597995 CBY1Q9Y3M2 126 aa7.02□□□□□ -1.29
TRIM28-212ENST00000597995 ZNF73O43830 326 aaPredicted RBP7.01□□□□□ -1.29
TRIM28-212ENST00000597995 S100A6P06703 90 aa7.01□□□□□ -1.29
TRIM28-212ENST00000597995 RPS29P62273 56 aaKnown RBP7.01□□□□□ -1.29
TRIM28-212ENST00000597995 SCGB1D4Q6XE38 83 aa7□□□□□ -1.29
TRIM28-212ENST00000597995 SPANXCQ9NY87 97 aa7□□□□□ -1.29
TRIM28-212ENST00000597995 AKR1D1P51857 326 aa6.99□□□□□ -1.29
TRIM28-212ENST00000597995 JOSD1Q15040 202 aaPredicted RBP6.99□□□□□ -1.29
TRIM28-212ENST00000597995 ANKRD39Q53RE8 183 aa6.99□□□□□ -1.29
TRIM28-212ENST00000597995 SSBP3-AS1Q7Z2R9 100 aa6.99□□□□□ -1.29
TRIM28-212ENST00000597995 ATOH7Q8N100 152 aa6.99□□□□□ -1.29
TRIM28-212ENST00000597995 ST20-AS1Q8NBB2 130 aa6.99□□□□□ -1.29
TRIM28-212ENST00000597995 OR13C6PQ8NH95 151 aa6.99□□□□□ -1.29
TRIM28-212ENST00000597995 IGLV9-49A0A0B4J1Y8 123 aa6.98□□□□□ -1.29
TRIM28-212ENST00000597995 MOBPQ13875 183 aa6.98□□□□□ -1.29
TRIM28-212ENST00000597995 C5orf52A6NGY3 159 aa6.97□□□□□ -1.29
TRIM28-212ENST00000597995 HINT1P49773 126 aaPredicted RBP6.97□□□□□ -1.29
TRIM28-212ENST00000597995 Q8N377 158 aa6.97□□□□□ -1.29
TRIM28-212ENST00000597995 HSBP1L1C9JCN9 74 aa6.96□□□□□ -1.3
TRIM28-212ENST00000597995 SLC25A20O43772 301 aa6.96□□□□□ -1.3
TRIM28-212ENST00000597995 XP32Q5T750 250 aa6.96□□□□□ -1.3
TRIM28-212ENST00000597995 CRCT1Q9UGL9 99 aa6.96□□□□□ -1.3
TRIM28-212ENST00000597995 COPS9Q8WXC6 57 aa6.95□□□□□ -1.3
TRIM28-212ENST00000597995 SPANXDQ9BXN6 97 aa6.95□□□□□ -1.3
TRIM28-212ENST00000597995 PCP2Q8IVA1 136 aa6.94□□□□□ -1.3
TRIM28-212ENST00000597995 SPRR1BP22528 89 aa6.92□□□□□ -1.3
TRIM28-212ENST00000597995 LINC00518Q8N0U6 118 aa6.92□□□□□ -1.3
TRIM28-212ENST00000597995 HIST3H2BBQ8N257 126 aa6.92□□□□□ -1.3
TRIM28-212ENST00000597995 ELOF1P60002 83 aaKnown RBP6.91□□□□□ -1.3
TRIM28-212ENST00000597995 SNRPEP62304 92 aaKnown RBP6.91□□□□□ -1.3
TRIM28-212ENST00000597995 C6orf99Q4VX62 202 aa6.91□□□□□ -1.3
TRIM28-212ENST00000597995 LCE2CQ5TA81 110 aa6.91□□□□□ -1.3
TRIM28-212ENST00000597995 HIST1H2BLQ99880 126 aa6.91□□□□□ -1.3
TRIM28-212ENST00000597995 FSIP2Q5CZC0 6907 aa6.9□□□□□ -1.3
TRIM28-212ENST00000597995 COX7BP24311 80 aa6.9□□□□□ -1.3
TRIM28-212ENST00000597995 C9orf153Q5TBE3 101 aa6.9□□□□□ -1.3
TRIM28-212ENST00000597995 MUSTN1Q8IVN3 82 aa6.9□□□□□ -1.3
TRIM28-212ENST00000597995 DHRS4-AS1Q9P1J3 65 aa6.9□□□□□ -1.3
TRIM28-212ENST00000597995 SCGB1D1O95968 90 aa6.89□□□□□ -1.31
TRIM28-212ENST00000597995 IFITM1P13164 125 aa6.89□□□□□ -1.31
TRIM28-212ENST00000597995 SLC25A34Q6PIV7 304 aa6.89□□□□□ -1.31
TRIM28-212ENST00000597995 Q6ZVH6 145 aa6.89□□□□□ -1.31
TRIM28-212ENST00000597995 A6NDN8 102 aa6.88□□□□□ -1.31
TRIM28-212ENST00000597995 TRBV7-6A0A0J9YX20 115 aa6.86□□□□□ -1.31
TRIM28-212ENST00000597995 KRTAP19-2Q3LHN2 52 aa6.86□□□□□ -1.31
TRIM28-212ENST00000597995 CFC1BP0CG36 223 aa6.84□□□□□ -1.31
TRIM28-212ENST00000597995 MT1HP80294 61 aa6.84□□□□□ -1.31
TRIM28-212ENST00000597995 SMIM29Q86T20 159 aa6.84□□□□□ -1.31
TRIM28-212ENST00000597995 DEFB105AQ8NG35 78 aa6.84□□□□□ -1.31
TRIM28-212ENST00000597995 A0A1B0GWB2 263 aa6.83□□□□□ -1.32
TRIM28-212ENST00000597995 Q1RN00 199 aa6.83□□□□□ -1.32
TRIM28-212ENST00000597995 HRCT1Q6UXD1 115 aa6.83□□□□□ -1.32
TRIM28-212ENST00000597995 LAMTOR3Q9UHA4 124 aa6.83□□□□□ -1.32
TRIM28-212ENST00000597995 TRAV13-2A0A0B4J235 113 aa6.82□□□□□ -1.32
TRIM28-212ENST00000597995 TAL2Q16559 108 aa6.82□□□□□ -1.32
TRIM28-212ENST00000597995 SMIM11BQ8TCY0 68 aa6.82□□□□□ -1.32
TRIM28-212ENST00000597995 IGLV5-48A0A075B6I7 105 aa6.81□□□□□ -1.32
TRIM28-212ENST00000597995 TEX49A0A1B0GTD5 131 aa6.81□□□□□ -1.32
TRIM28-212ENST00000597995 A4D1N5 150 aa6.81□□□□□ -1.32
TRIM28-212ENST00000597995 PCOTHQ58A44 107 aa6.81□□□□□ -1.32
TRIM28-212ENST00000597995 LIMD2Q9BT23 127 aa6.81□□□□□ -1.32
TRIM28-212ENST00000597995 IGLV8-61A0A075B6I0 122 aa6.8□□□□□ -1.32
TRIM28-212ENST00000597995 A0A0G2JQZ4 141 aa6.8□□□□□ -1.32
TRIM28-212ENST00000597995 CD164Q04900 197 aa6.79□□□□□ -1.32
TRIM28-212ENST00000597995 HIST1H4GQ99525 98 aa6.79□□□□□ -1.32
TRIM28-212ENST00000597995 VAMP3Q15836 100 aa6.78□□□□□ -1.32
TRIM28-212ENST00000597995 LORP23490 312 aaPredicted RBP6.77□□□□□ -1.33
TRIM28-212ENST00000597995 PRO1933Q9H354 126 aa6.77□□□□□ -1.33
TRIM28-212ENST00000597995 NHP2Q9NX24 153 aaKnown RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms