RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 PPDPFQ9H3Y8 114 aa8.83□□□□□ -1
TRIM28-203ENST00000593582 C4orf48Q5BLP8 95 aa8.82□□□□□ -1
TRIM28-203ENST00000593582 CBY1Q9Y3M2 126 aa8.82□□□□□ -1
TRIM28-203ENST00000593582 C20orf202A1L168 122 aa8.81□□□□□ -1
TRIM28-203ENST00000593582 JOSD1Q15040 202 aaPredicted RBP8.81□□□□□ -1
TRIM28-203ENST00000593582 LINC00483Q53H64 154 aa8.81□□□□□ -1
TRIM28-203ENST00000593582 GAGE2AQ6NT46 116 aa8.81□□□□□ -1
TRIM28-203ENST00000593582 LINC00308Q8TCZ7 52 aa8.81□□□□□ -1
TRIM28-203ENST00000593582 LITAFQ99732 161 aa8.81□□□□□ -1
TRIM28-203ENST00000593582 Q9BRP9 147 aa8.81□□□□□ -1
TRIM28-203ENST00000593582 SPANXCQ9NY87 97 aa8.81□□□□□ -1
TRIM28-203ENST00000593582 ZNF73O43830 326 aaPredicted RBP8.8□□□□□ -1
TRIM28-203ENST00000593582 ERC2-IT1O76042 136 aa8.8□□□□□ -1
TRIM28-203ENST00000593582 Q8NBF4 154 aa8.79□□□□□ -1
TRIM28-203ENST00000593582 TTTY13Q9BZ97 58 aa8.79□□□□□ -1
TRIM28-203ENST00000593582 HINT1P49773 126 aaPredicted RBP8.78□□□□□ -1
TRIM28-203ENST00000593582 OR13C6PQ8NH95 151 aa8.78□□□□□ -1
TRIM28-203ENST00000593582 IGLV7-46A0A075B6I9 117 aa8.76□□□□□ -1.01
TRIM28-203ENST00000593582 AKR1D1P51857 326 aa8.76□□□□□ -1.01
TRIM28-203ENST00000593582 SCGB1D4Q6XE38 83 aa8.76□□□□□ -1.01
TRIM28-203ENST00000593582 IGLV9-49A0A0B4J1Y8 123 aa8.75□□□□□ -1.01
TRIM28-203ENST00000593582 LINC00518Q8N0U6 118 aa8.75□□□□□ -1.01
TRIM28-203ENST00000593582 SPANXDQ9BXN6 97 aa8.75□□□□□ -1.01
TRIM28-203ENST00000593582 MUC2Q02817 5179 aa8.74□□□□□ -1.01
TRIM28-203ENST00000593582 SPINK1P00995 79 aa8.74□□□□□ -1.01
TRIM28-203ENST00000593582 MOBPQ13875 183 aa8.74□□□□□ -1.01
TRIM28-203ENST00000593582 ATOH7Q8N100 152 aa8.74□□□□□ -1.01
TRIM28-203ENST00000593582 TPRXLQ17RH7 258 aa8.73□□□□□ -1.01
TRIM28-203ENST00000593582 ANKRD39Q53RE8 183 aa8.73□□□□□ -1.01
TRIM28-203ENST00000593582 COPS9Q8WXC6 57 aa8.73□□□□□ -1.01
TRIM28-203ENST00000593582 C5orf52A6NGY3 159 aa8.72□□□□□ -1.01
TRIM28-203ENST00000593582 SSBP3-AS1Q7Z2R9 100 aa8.72□□□□□ -1.01
TRIM28-203ENST00000593582 CDIP1Q9H305 208 aa8.72□□□□□ -1.01
TRIM28-203ENST00000593582 FP248Q71RG6 208 aaPredicted RBP8.7□□□□□ -1.02
TRIM28-203ENST00000593582 ST20-AS1Q8NBB2 130 aa8.7□□□□□ -1.02
TRIM28-203ENST00000593582 DHRS4-AS1Q9P1J3 65 aa8.7□□□□□ -1.02
TRIM28-203ENST00000593582 IFITM1P13164 125 aa8.69□□□□□ -1.02
TRIM28-203ENST00000593582 S100A1P23297 94 aa8.69□□□□□ -1.02
TRIM28-203ENST00000593582 S100A2P29034 98 aa8.69□□□□□ -1.02
TRIM28-203ENST00000593582 SNRPEP62304 92 aaKnown RBP8.69□□□□□ -1.02
TRIM28-203ENST00000593582 C9orf153Q5TBE3 101 aa8.69□□□□□ -1.02
TRIM28-203ENST00000593582 Q6ZVH6 145 aa8.69□□□□□ -1.02
TRIM28-203ENST00000593582 PCP2Q8IVA1 136 aa8.69□□□□□ -1.02
TRIM28-203ENST00000593582 COX7BP24311 80 aa8.67□□□□□ -1.02
TRIM28-203ENST00000593582 RPS29P62273 56 aaKnown RBP8.67□□□□□ -1.02
TRIM28-203ENST00000593582 C6orf99Q4VX62 202 aa8.67□□□□□ -1.02
TRIM28-203ENST00000593582 HIST3H2BBQ8N257 126 aa8.67□□□□□ -1.02
TRIM28-203ENST00000593582 ELOF1P60002 83 aaKnown RBP8.66□□□□□ -1.02
TRIM28-203ENST00000593582 SLC25A34Q6PIV7 304 aa8.66□□□□□ -1.02
TRIM28-203ENST00000593582 HIST1H2BLQ99880 126 aa8.66□□□□□ -1.02
TRIM28-203ENST00000593582 A6NDN8 102 aa8.65□□□□□ -1.02
TRIM28-203ENST00000593582 MUSTN1Q8IVN3 82 aa8.65□□□□□ -1.02
TRIM28-203ENST00000593582 S100A6P06703 90 aa8.64□□□□□ -1.03
TRIM28-203ENST00000593582 TRBV7-6A0A0J9YX20 115 aa8.63□□□□□ -1.03
TRIM28-203ENST00000593582 A0A0U1RQV1 116 aa8.63□□□□□ -1.03
TRIM28-203ENST00000593582 HSBP1L1C9JCN9 74 aa8.63□□□□□ -1.03
TRIM28-203ENST00000593582 SPRR1BP22528 89 aa8.63□□□□□ -1.03
TRIM28-203ENST00000593582 Q8N377 158 aa8.63□□□□□ -1.03
TRIM28-203ENST00000593582 SLC25A20O43772 301 aa8.62□□□□□ -1.03
TRIM28-203ENST00000593582 LAMTOR3Q9UHA4 124 aa8.62□□□□□ -1.03
TRIM28-203ENST00000593582 TRAV13-2A0A0B4J235 113 aa8.6□□□□□ -1.03
TRIM28-203ENST00000593582 A0A1B0GWB2 263 aa8.6□□□□□ -1.03
TRIM28-203ENST00000593582 TAL2Q16559 108 aa8.6□□□□□ -1.03
TRIM28-203ENST00000593582 KRTAP13-3Q3SY46 172 aa8.59□□□□□ -1.03
TRIM28-203ENST00000593582 DEFB105AQ8NG35 78 aa8.59□□□□□ -1.03
TRIM28-203ENST00000593582 TEX49A0A1B0GTD5 131 aa8.57□□□□□ -1.04
TRIM28-203ENST00000593582 A4D1N5 150 aa8.57□□□□□ -1.04
TRIM28-203ENST00000593582 MUC17Q685J3 4493 aa8.56□□□□□ -1.04
TRIM28-203ENST00000593582 Q1RN00 199 aa8.56□□□□□ -1.04
TRIM28-203ENST00000593582 SMIM11BQ8TCY0 68 aa8.55□□□□□ -1.04
TRIM28-203ENST00000593582 NHP2Q9NX24 153 aaKnown RBP8.55□□□□□ -1.04
TRIM28-203ENST00000593582 SCGB1D1O95968 90 aa8.54□□□□□ -1.04
TRIM28-203ENST00000593582 HRCT1Q6UXD1 115 aa8.54□□□□□ -1.04
TRIM28-203ENST00000593582 LIMD2Q9BT23 127 aa8.54□□□□□ -1.04
TRIM28-203ENST00000593582 IGLV5-48A0A075B6I7 105 aa8.52□□□□□ -1.05
TRIM28-203ENST00000593582 VAMP3Q15836 100 aa8.52□□□□□ -1.05
TRIM28-203ENST00000593582 PRO1933Q9H354 126 aa8.52□□□□□ -1.05
TRIM28-203ENST00000593582 LINC01547P58512 204 aaPredicted RBP8.5□□□□□ -1.05
TRIM28-203ENST00000593582 CD164Q04900 197 aa8.5□□□□□ -1.05
TRIM28-203ENST00000593582 SMIM29Q86T20 159 aa8.5□□□□□ -1.05
TRIM28-203ENST00000593582 H7C2G1 150 aa8.48□□□□□ -1.05
TRIM28-203ENST00000593582 ASB16-AS1Q495Z4 193 aa8.48□□□□□ -1.05
TRIM28-203ENST00000593582 HIST1H4GQ99525 98 aa8.48□□□□□ -1.05
TRIM28-203ENST00000593582 COX8AP10176 69 aa8.47□□□□□ -1.05
TRIM28-203ENST00000593582 SEC61BP60468 96 aaKnown RBP8.47□□□□□ -1.05
TRIM28-203ENST00000593582 LINC00575Q6W349 94 aa8.46□□□□□ -1.06
TRIM28-203ENST00000593582 FAT4Q6V0I7 4981 aa8.44□□□□□ -1.06
TRIM28-203ENST00000593582 hADV29S1A0JD25 119 aa8.44□□□□□ -1.06
TRIM28-203ENST00000593582 DLEU1O43261 78 aa8.44□□□□□ -1.06
TRIM28-203ENST00000593582 C12orf57Q99622 126 aa8.44□□□□□ -1.06
TRIM28-203ENST00000593582 XP32Q5T750 250 aa8.43□□□□□ -1.06
TRIM28-203ENST00000593582 F8WEM9 126 aa8.42□□□□□ -1.06
TRIM28-203ENST00000593582 BVES-AS1Q5T3Y7 98 aa8.42□□□□□ -1.06
TRIM28-203ENST00000593582 Q5XG85 94 aa8.42□□□□□ -1.06
TRIM28-203ENST00000593582 A0A0G2JQZ4 141 aa8.41□□□□□ -1.06
TRIM28-203ENST00000593582 Q6ZQY7 126 aa8.41□□□□□ -1.06
TRIM28-203ENST00000593582 C14orf144Q96I85 54 aa8.41□□□□□ -1.06
TRIM28-203ENST00000593582 PAM16Q9Y3D7 125 aa8.41□□□□□ -1.06
TRIM28-203ENST00000593582 SPATA45Q537H7 98 aa8.39□□□□□ -1.07
TRIM28-203ENST00000593582 VAMP8Q9BV40 100 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 167.7 ms