RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TM2D3Q9BRN9 247 aa6.63□□□□□ -1.35
VPS53-220ENST00000576149 IGKV3D-7A0A0C4DH55 119 aa6.62□□□□□ -1.35
VPS53-220ENST00000576149 LOC110117498A0A087WWA1 95 aa6.62□□□□□ -1.35
VPS53-220ENST00000576149 PRB2P02812 416 aaPredicted RBP6.62□□□□□ -1.35
VPS53-220ENST00000576149 HIST1H4AP62805 103 aaKnown RBP6.62□□□□□ -1.35
VPS53-220ENST00000576149 LAMTOR3Q9UHA4 124 aa6.62□□□□□ -1.35
VPS53-220ENST00000576149 LINC00588Q9Y4M8 146 aa6.62□□□□□ -1.35
VPS53-220ENST00000576149 FLNBO75369 2602 aaKnown RBP6.62□□□□□ -1.35
VPS53-220ENST00000576149 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.61□□□□□ -1.35
VPS53-220ENST00000576149 Q6ZQT0 140 aa6.61□□□□□ -1.35
VPS53-220ENST00000576149 DPH3Q96FX2 82 aa6.6□□□□□ -1.35
VPS53-220ENST00000576149 K7EIL1 84 aa6.6□□□□□ -1.35
VPS53-220ENST00000576149 MAST4O15021 2626 aa6.6□□□□□ -1.35
VPS53-220ENST00000576149 TLX1NBP0CAT3 122 aa6.58□□□□□ -1.36
VPS53-220ENST00000576149 ATP5EP2Q5VTU8 51 aa6.58□□□□□ -1.36
VPS53-220ENST00000576149 C3orf22Q8N5N4 141 aa6.58□□□□□ -1.36
VPS53-220ENST00000576149 DSCR8Q96T75 97 aa6.58□□□□□ -1.36
VPS53-220ENST00000576149 HUWE1Q7Z6Z7 4374 aaKnown RBP6.58□□□□□ -1.36
VPS53-220ENST00000576149 PDE6GP18545 87 aa6.58□□□□□ -1.36
VPS53-220ENST00000576149 UBL5Q9BZL1 73 aa6.58□□□□□ -1.36
VPS53-220ENST00000576149 ATOX1O00244 68 aa6.57□□□□□ -1.36
VPS53-220ENST00000576149 DNAH1Q9P2D7 4330 aa6.57□□□□□ -1.36
VPS53-220ENST00000576149 A0A087WVE0 104 aa6.57□□□□□ -1.36
VPS53-220ENST00000576149 CASC10Q5T4H9 136 aa6.57□□□□□ -1.36
VPS53-220ENST00000576149 C9orf153Q5TBE3 101 aa6.57□□□□□ -1.36
VPS53-220ENST00000576149 M0R2N4 97 aa6.56□□□□□ -1.36
VPS53-220ENST00000576149 PRYO14603 147 aa6.56□□□□□ -1.36
VPS53-220ENST00000576149 NKAPP1Q8N9T2 125 aa6.56□□□□□ -1.36
VPS53-220ENST00000576149 KCNQ1DNQ9H478 68 aa6.56□□□□□ -1.36
VPS53-220ENST00000576149 TRBV7-4A0A0J9YYF1 115 aa6.56□□□□□ -1.36
VPS53-220ENST00000576149 C8orf87E5RJ46 101 aa6.56□□□□□ -1.36
VPS53-220ENST00000576149 UQCRQO14949 82 aa6.56□□□□□ -1.36
VPS53-220ENST00000576149 UPK3BQ9BT76 320 aa6.56□□□□□ -1.36
VPS53-220ENST00000576149 RBM12B-AS1Q9P1G2 102 aa6.56□□□□□ -1.36
VPS53-220ENST00000576149 PLA2G2DQ9UNK4 145 aa6.56□□□□□ -1.36
VPS53-220ENST00000576149 BAHCC1Q9P281 2608 aa6.55□□□□□ -1.36
VPS53-220ENST00000576149 C7orf33Q8WU49 177 aa6.55□□□□□ -1.36
VPS53-220ENST00000576149 RMI2Q96E14 147 aa6.55□□□□□ -1.36
VPS53-220ENST00000576149 NOTCH1P46531 2555 aa6.55□□□□□ -1.36
VPS53-220ENST00000576149 COX7CP15954 63 aa6.54□□□□□ -1.36
VPS53-220ENST00000576149 BRK1Q8WUW1 75 aa6.53□□□□□ -1.36
VPS53-220ENST00000576149 IGLV5-37A0A075B6J1 123 aa6.52□□□□□ -1.36
VPS53-220ENST00000576149 COL6A5A8TX70 2615 aa6.52□□□□□ -1.37
VPS53-220ENST00000576149 Q6ZVQ6 151 aa6.52□□□□□ -1.37
VPS53-220ENST00000576149 FAM168BA1KXE4 195 aa6.51□□□□□ -1.37
VPS53-220ENST00000576149 IGLV1-50A0A075B6I6 118 aa6.5□□□□□ -1.37
VPS53-220ENST00000576149 LINC01547P58512 204 aaPredicted RBP6.5□□□□□ -1.37
VPS53-220ENST00000576149 KRTAP7-1Q8IUC3 87 aa6.5□□□□□ -1.37
VPS53-220ENST00000576149 KRTAP4-16G5E9R7 235 aaPredicted RBP6.5□□□□□ -1.37
VPS53-220ENST00000576149 SERP2Q8N6R1 65 aa6.5□□□□□ -1.37
VPS53-220ENST00000576149 RPL37AP8A6NKH3 93 aa6.49□□□□□ -1.37
VPS53-220ENST00000576149 CRYGAP11844 174 aa6.49□□□□□ -1.37
VPS53-220ENST00000576149 SPRR1AP35321 89 aa6.49□□□□□ -1.37
VPS53-220ENST00000576149 TMEM258P61165 79 aa6.49□□□□□ -1.37
VPS53-220ENST00000576149 NBEAL1Q6ZS30 2694 aa6.49□□□□□ -1.37
VPS53-220ENST00000576149 Q6ZRX8 168 aa6.49□□□□□ -1.37
VPS53-220ENST00000576149 MDFIQ99750 246 aa6.49□□□□□ -1.37
VPS53-220ENST00000576149 HAMPP81172 84 aa6.48□□□□□ -1.37
VPS53-220ENST00000576149 DHRS4-AS1Q9P1J3 65 aa6.48□□□□□ -1.37
VPS53-220ENST00000576149 CXCL6P80162 114 aa6.48□□□□□ -1.37
VPS53-220ENST00000576149 Q8N377 158 aa6.48□□□□□ -1.37
VPS53-220ENST00000576149 Q9BRP9 147 aa6.47□□□□□ -1.37
VPS53-220ENST00000576149 KRTAP1-5Q9BYS1 174 aa6.47□□□□□ -1.37
VPS53-220ENST00000576149 DEFB105AQ8NG35 78 aa6.46□□□□□ -1.38
VPS53-220ENST00000576149 ETDCA0A1B0GVM5 59 aa6.46□□□□□ -1.38
VPS53-220ENST00000576149 IGLV5-48A0A075B6I7 105 aa6.45□□□□□ -1.38
VPS53-220ENST00000576149 PRR15Q8IV56 129 aa6.44□□□□□ -1.38
VPS53-220ENST00000576149 APLNQ9ULZ1 77 aa6.44□□□□□ -1.38
VPS53-220ENST00000576149 DNAH9Q9NYC9 4486 aa6.43□□□□□ -1.38
VPS53-220ENST00000576149 EPM2AB3EWF7 344 aa6.43□□□□□ -1.38
VPS53-220ENST00000576149 BCE1O60756 84 aa6.43□□□□□ -1.38
VPS53-220ENST00000576149 CNBPP62633 177 aaKnown RBP6.43□□□□□ -1.38
VPS53-220ENST00000576149 CYSTM1Q9H1C7 97 aa6.42□□□□□ -1.38
VPS53-220ENST00000576149 MGAM2Q2M2H8 2515 aa6.42□□□□□ -1.38
VPS53-220ENST00000576149 UBE2DNLQ8IWF7 75 aa6.42□□□□□ -1.38
VPS53-220ENST00000576149 ST20-AS1Q8NBB2 130 aa6.42□□□□□ -1.38
VPS53-220ENST00000576149 C16orf90A8MZG2 172 aa6.41□□□□□ -1.38
VPS53-220ENST00000576149 REG3GQ6UW15 175 aa6.41□□□□□ -1.38
VPS53-220ENST00000576149 SCXQ7RTU7 201 aa6.41□□□□□ -1.38
VPS53-220ENST00000576149 A0A096LNI7 61 aa6.41□□□□□ -1.38
VPS53-220ENST00000576149 PSCAO43653 123 aa6.41□□□□□ -1.38
VPS53-220ENST00000576149 ERC2-IT1O76042 136 aa6.41□□□□□ -1.38
VPS53-220ENST00000576149 B9D2Q9BPU9 175 aa6.4□□□□□ -1.38
VPS53-220ENST00000576149 DNAH10Q8IVF4 4471 aa6.4□□□□□ -1.39
VPS53-220ENST00000576149 UBE2BP63146 152 aa6.39□□□□□ -1.39
VPS53-220ENST00000576149 NREPQ16612 68 aa6.39□□□□□ -1.39
VPS53-220ENST00000576149 LYSTQ99698 3801 aa6.39□□□□□ -1.39
VPS53-220ENST00000576149 IGKV2-24A0A0C4DH68 120 aa6.39□□□□□ -1.39
VPS53-220ENST00000576149 A0A1B0GW54 56 aa6.39□□□□□ -1.39
VPS53-220ENST00000576149 A0A1W2PNN7 141 aa6.39□□□□□ -1.39
VPS53-220ENST00000576149 C3orf84H3BNL1 204 aa6.39□□□□□ -1.39
VPS53-220ENST00000576149 DYNC2H1Q8NCM8 4307 aaKnown RBP6.38□□□□□ -1.39
VPS53-220ENST00000576149 TRAV7A0A075B6U4 112 aa6.38□□□□□ -1.39
VPS53-220ENST00000576149 A0A1W2PNM2 257 aa6.38□□□□□ -1.39
VPS53-220ENST00000576149 FUSP35637 526 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS53-220ENST00000576149 C14orf177Q52M58 125 aa6.38□□□□□ -1.39
VPS53-220ENST00000576149 C1orf137Q5JT78 98 aa6.38□□□□□ -1.39
VPS53-220ENST00000576149 STAB2Q8WWQ8 2551 aa6.37□□□□□ -1.39
VPS53-220ENST00000576149 COL7A1Q02388 2944 aa6.36□□□□□ -1.39
VPS53-220ENST00000576149 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms