RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 SPAG11AQ6PDA7 123 aa11.71□□□□□ -0.53
CLK3-225ENST00000569063 LINC00308Q8TCZ7 52 aa11.71□□□□□ -0.53
CLK3-225ENST00000569063 Q9BRP9 147 aa11.71□□□□□ -0.53
CLK3-225ENST00000569063 ERC2-IT1O76042 136 aa11.7□□□□□ -0.54
CLK3-225ENST00000569063 SPANXCQ9NY87 97 aa11.7□□□□□ -0.54
CLK3-225ENST00000569063 TTTY13Q9BZ97 58 aa11.69□□□□□ -0.54
CLK3-225ENST00000569063 PPDPFQ9H3Y8 114 aa11.69□□□□□ -0.54
CLK3-225ENST00000569063 C20orf202A1L168 122 aa11.68□□□□□ -0.54
CLK3-225ENST00000569063 RETNLBQ9BQ08 111 aa11.68□□□□□ -0.54
CLK3-225ENST00000569063 CBY1Q9Y3M2 126 aa11.68□□□□□ -0.54
CLK3-225ENST00000569063 ZNF73O43830 326 aaPredicted RBP11.67□□□□□ -0.54
CLK3-225ENST00000569063 JOSD1Q15040 202 aaPredicted RBP11.67□□□□□ -0.54
CLK3-225ENST00000569063 GAGE2AQ6NT46 116 aa11.67□□□□□ -0.54
CLK3-225ENST00000569063 C4orf48Q5BLP8 95 aa11.64□□□□□ -0.55
CLK3-225ENST00000569063 Q8NBF4 154 aa11.64□□□□□ -0.55
CLK3-225ENST00000569063 AKR1D1P51857 326 aa11.63□□□□□ -0.55
CLK3-225ENST00000569063 HINT1P49773 126 aaPredicted RBP11.62□□□□□ -0.55
CLK3-225ENST00000569063 ANKRD39Q53RE8 183 aa11.62□□□□□ -0.55
CLK3-225ENST00000569063 OR13C6PQ8NH95 151 aa11.62□□□□□ -0.55
CLK3-225ENST00000569063 LINC00518Q8N0U6 118 aa11.61□□□□□ -0.55
CLK3-225ENST00000569063 SPANXDQ9BXN6 97 aa11.61□□□□□ -0.55
CLK3-225ENST00000569063 SCGB1D4Q6XE38 83 aa11.6□□□□□ -0.55
CLK3-225ENST00000569063 ATOH7Q8N100 152 aa11.6□□□□□ -0.55
CLK3-225ENST00000569063 IGLV7-46A0A075B6I9 117 aa11.59□□□□□ -0.55
CLK3-225ENST00000569063 C5orf52A6NGY3 159 aa11.59□□□□□ -0.55
CLK3-225ENST00000569063 S100A1P23297 94 aa11.59□□□□□ -0.55
CLK3-225ENST00000569063 TPRXLQ17RH7 258 aa11.59□□□□□ -0.55
CLK3-225ENST00000569063 SSBP3-AS1Q7Z2R9 100 aa11.59□□□□□ -0.55
CLK3-225ENST00000569063 IGLV9-49A0A0B4J1Y8 123 aa11.58□□□□□ -0.56
CLK3-225ENST00000569063 SPINK1P00995 79 aa11.58□□□□□ -0.56
CLK3-225ENST00000569063 MOBPQ13875 183 aa11.58□□□□□ -0.56
CLK3-225ENST00000569063 SNRPEP62304 92 aaKnown RBP11.56□□□□□ -0.56
CLK3-225ENST00000569063 COPS9Q8WXC6 57 aa11.56□□□□□ -0.56
CLK3-225ENST00000569063 IFITM1P13164 125 aa11.55□□□□□ -0.56
CLK3-225ENST00000569063 Q6ZVH6 145 aa11.55□□□□□ -0.56
CLK3-225ENST00000569063 PCP2Q8IVA1 136 aa11.55□□□□□ -0.56
CLK3-225ENST00000569063 HIST3H2BBQ8N257 126 aa11.55□□□□□ -0.56
CLK3-225ENST00000569063 ST20-AS1Q8NBB2 130 aa11.55□□□□□ -0.56
CLK3-225ENST00000569063 FP248Q71RG6 208 aaPredicted RBP11.54□□□□□ -0.56
CLK3-225ENST00000569063 HIST1H2BLQ99880 126 aa11.54□□□□□ -0.56
CLK3-225ENST00000569063 DHRS4-AS1Q9P1J3 65 aa11.54□□□□□ -0.56
CLK3-225ENST00000569063 S100A2P29034 98 aa11.52□□□□□ -0.57
CLK3-225ENST00000569063 RPS29P62273 56 aaKnown RBP11.52□□□□□ -0.57
CLK3-225ENST00000569063 CDIP1Q9H305 208 aa11.52□□□□□ -0.57
CLK3-225ENST00000569063 ELOF1P60002 83 aaKnown RBP11.51□□□□□ -0.57
CLK3-225ENST00000569063 C6orf99Q4VX62 202 aa11.51□□□□□ -0.57
CLK3-225ENST00000569063 SPRR1BP22528 89 aa11.5□□□□□ -0.57
CLK3-225ENST00000569063 MUSTN1Q8IVN3 82 aa11.5□□□□□ -0.57
CLK3-225ENST00000569063 COX7BP24311 80 aa11.49□□□□□ -0.57
CLK3-225ENST00000569063 TRBV7-6A0A0J9YX20 115 aa11.48□□□□□ -0.57
CLK3-225ENST00000569063 C9orf153Q5TBE3 101 aa11.48□□□□□ -0.57
CLK3-225ENST00000569063 MUC2Q02817 5179 aa11.47□□□□□ -0.57
CLK3-225ENST00000569063 S100A6P06703 90 aa11.46□□□□□ -0.57
CLK3-225ENST00000569063 SLC25A34Q6PIV7 304 aa11.46□□□□□ -0.57
CLK3-225ENST00000569063 Q8N377 158 aa11.46□□□□□ -0.57
CLK3-225ENST00000569063 A6NDN8 102 aa11.45□□□□□ -0.58
CLK3-225ENST00000569063 A0A1B0GWB2 263 aa11.43□□□□□ -0.58
CLK3-225ENST00000569063 HSBP1L1C9JCN9 74 aa11.43□□□□□ -0.58
CLK3-225ENST00000569063 SLC25A20O43772 301 aa11.43□□□□□ -0.58
CLK3-225ENST00000569063 KRTAP13-3Q3SY46 172 aa11.42□□□□□ -0.58
CLK3-225ENST00000569063 TRAV13-2A0A0B4J235 113 aa11.41□□□□□ -0.58
CLK3-225ENST00000569063 LAMTOR3Q9UHA4 124 aa11.41□□□□□ -0.58
CLK3-225ENST00000569063 TAL2Q16559 108 aa11.39□□□□□ -0.59
CLK3-225ENST00000569063 TEX49A0A1B0GTD5 131 aa11.38□□□□□ -0.59
CLK3-225ENST00000569063 A4D1N5 150 aa11.38□□□□□ -0.59
CLK3-225ENST00000569063 A0A0U1RQV1 116 aa11.37□□□□□ -0.59
CLK3-225ENST00000569063 DEFB105AQ8NG35 78 aa11.37□□□□□ -0.59
CLK3-225ENST00000569063 SMIM11BQ8TCY0 68 aa11.37□□□□□ -0.59
CLK3-225ENST00000569063 IGLV5-48A0A075B6I7 105 aa11.34□□□□□ -0.59
CLK3-225ENST00000569063 SCGB1D1O95968 90 aa11.34□□□□□ -0.59
CLK3-225ENST00000569063 LINC01547P58512 204 aaPredicted RBP11.33□□□□□ -0.6
CLK3-225ENST00000569063 Q1RN00 199 aa11.33□□□□□ -0.6
CLK3-225ENST00000569063 MUC17Q685J3 4493 aa11.33□□□□□ -0.6
CLK3-225ENST00000569063 SMIM29Q86T20 159 aa11.32□□□□□ -0.6
CLK3-225ENST00000569063 NHP2Q9NX24 153 aaKnown RBP11.32□□□□□ -0.6
CLK3-225ENST00000569063 HRCT1Q6UXD1 115 aa11.3□□□□□ -0.6
CLK3-225ENST00000569063 LIMD2Q9BT23 127 aa11.3□□□□□ -0.6
CLK3-225ENST00000569063 PRO1933Q9H354 126 aa11.3□□□□□ -0.6
CLK3-225ENST00000569063 CD164Q04900 197 aa11.29□□□□□ -0.6
CLK3-225ENST00000569063 COX8AP10176 69 aa11.28□□□□□ -0.6
CLK3-225ENST00000569063 VAMP3Q15836 100 aa11.28□□□□□ -0.6
CLK3-225ENST00000569063 ASB16-AS1Q495Z4 193 aa11.27□□□□□ -0.61
CLK3-225ENST00000569063 DLEU1O43261 78 aa11.26□□□□□ -0.61
CLK3-225ENST00000569063 LINC00575Q6W349 94 aa11.25□□□□□ -0.61
CLK3-225ENST00000569063 HIST1H4GQ99525 98 aa11.25□□□□□ -0.61
CLK3-225ENST00000569063 H7C2G1 150 aa11.23□□□□□ -0.61
CLK3-225ENST00000569063 SEC61BP60468 96 aaKnown RBP11.21□□□□□ -0.61
CLK3-225ENST00000569063 XP32Q5T750 250 aa11.21□□□□□ -0.61
CLK3-225ENST00000569063 Q5XG85 94 aa11.21□□□□□ -0.61
CLK3-225ENST00000569063 hADV29S1A0JD25 119 aa11.19□□□□□ -0.62
CLK3-225ENST00000569063 C12orf57Q99622 126 aa11.19□□□□□ -0.62
CLK3-225ENST00000569063 C14orf144Q96I85 54 aa11.18□□□□□ -0.62
CLK3-225ENST00000569063 A0A0G2JQZ4 141 aa11.17□□□□□ -0.62
CLK3-225ENST00000569063 Q6ZQY7 126 aa11.17□□□□□ -0.62
CLK3-225ENST00000569063 BVES-AS1Q5T3Y7 98 aa11.16□□□□□ -0.62
CLK3-225ENST00000569063 LCE2AQ5TA79 106 aaPredicted RBP11.16□□□□□ -0.62
CLK3-225ENST00000569063 HIGD1BQ9P298 99 aa11.16□□□□□ -0.62
CLK3-225ENST00000569063 PAM16Q9Y3D7 125 aa11.16□□□□□ -0.62
CLK3-225ENST00000569063 SPATA45Q537H7 98 aa11.15□□□□□ -0.62
CLK3-225ENST00000569063 FAT4Q6V0I7 4981 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 115.5 ms