RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 GHRHP01286 108 aa5.74□□□□□ -1.49
VPS39-207ENST00000563692 BAALC-AS2P0C853 105 aa5.74□□□□□ -1.49
VPS39-207ENST00000563692 Q8N814 137 aa5.74□□□□□ -1.49
VPS39-207ENST00000563692 C9orf163Q8N9P6 203 aa5.74□□□□□ -1.49
VPS39-207ENST00000563692 KRTAP17-1Q9BYP8 105 aa5.74□□□□□ -1.49
VPS39-207ENST00000563692 LINC00474Q9P2X8 69 aa5.74□□□□□ -1.49
VPS39-207ENST00000563692 HERC2O95714 4834 aa5.74□□□□□ -1.49
VPS39-207ENST00000563692 A0A087WYN8 130 aa5.73□□□□□ -1.49
VPS39-207ENST00000563692 H3BQ85 93 aa5.73□□□□□ -1.49
VPS39-207ENST00000563692 COX7BP24311 80 aa5.73□□□□□ -1.49
VPS39-207ENST00000563692 PPDPFLQ8WWR9 84 aa5.73□□□□□ -1.49
VPS39-207ENST00000563692 FAM218AQ96MZ4 157 aa5.73□□□□□ -1.49
VPS39-207ENST00000563692 KIAA1109Q2LD37 5005 aa5.73□□□□□ -1.49
VPS39-207ENST00000563692 DNAH11Q96DT5 4516 aa5.73□□□□□ -1.49
VPS39-207ENST00000563692 hADV29S1A0JD25 119 aa5.72□□□□□ -1.49
VPS39-207ENST00000563692 SERTAD4-AS1Q5TG53 156 aa5.72□□□□□ -1.49
VPS39-207ENST00000563692 LINC00575Q6W349 94 aa5.72□□□□□ -1.49
VPS39-207ENST00000563692 C7orf33Q8WU49 177 aa5.72□□□□□ -1.49
VPS39-207ENST00000563692 KCNQ1DNQ9H478 68 aa5.72□□□□□ -1.49
VPS39-207ENST00000563692 ORMDL1Q9P0S3 153 aa5.72□□□□□ -1.49
VPS39-207ENST00000563692 C22orf24Q9Y442 160 aa5.72□□□□□ -1.49
VPS39-207ENST00000563692 IGLV5-52A0A0A0MRZ9 124 aa5.71□□□□□ -1.5
VPS39-207ENST00000563692 MRPL55Q7Z7F7 128 aaKnown RBP5.71□□□□□ -1.5
VPS39-207ENST00000563692 PKD1P98161 4303 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 IGLV1-50A0A075B6I6 118 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 A0A096LNI7 61 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 IGKV2-24A0A0C4DH68 120 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 FAM168BA1KXE4 195 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 TMEM256-PLSCR3K7ERE1 68 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 PRYO14603 147 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 INAFM2P0DMQ5 153 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 FUSP35637 526 aaKnown RBP eCLIP5.7□□□□□ -1.5
VPS39-207ENST00000563692 SDIM1Q6ZPB5 146 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 FAM19A5Q7Z5A7 132 aaPredicted RBP5.7□□□□□ -1.5
VPS39-207ENST00000563692 Q8N1X5 172 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 DPH3Q96FX2 82 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 LINC00167Q96N53 147 aa5.7□□□□□ -1.5
VPS39-207ENST00000563692 ELOF1P60002 83 aaKnown RBP5.69□□□□□ -1.5
VPS39-207ENST00000563692 EPM2AB3EWF7 344 aa5.68□□□□□ -1.5
VPS39-207ENST00000563692 DYNC1H1Q14204 4646 aaKnown RBP5.68□□□□□ -1.5
VPS39-207ENST00000563692 ETDCA0A1B0GVM5 59 aa5.67□□□□□ -1.5
VPS39-207ENST00000563692 RPL37AP8A6NKH3 93 aa5.67□□□□□ -1.5
VPS39-207ENST00000563692 KRTAP10-1P60331 282 aa5.67□□□□□ -1.5
VPS39-207ENST00000563692 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.67□□□□□ -1.5
VPS39-207ENST00000563692 KRTAP4-5Q9BYR2 181 aa5.67□□□□□ -1.5
VPS39-207ENST00000563692 TEX49A0A1B0GTD5 131 aa5.66□□□□□ -1.5
VPS39-207ENST00000563692 A0A1W2PNN7 141 aa5.66□□□□□ -1.5
VPS39-207ENST00000563692 LINC00528Q8N1L1 170 aa5.66□□□□□ -1.5
VPS39-207ENST00000563692 DHRS4-AS1Q9P1J3 65 aa5.66□□□□□ -1.5
VPS39-207ENST00000563692 LRP1BQ9NZR2 4599 aa5.65□□□□□ -1.5
VPS39-207ENST00000563692 JMJD7-PLA2G4BH0Y9G9 81 aa5.65□□□□□ -1.5
VPS39-207ENST00000563692 SPRR1AP35321 89 aa5.65□□□□□ -1.5
VPS39-207ENST00000563692 UBE2BP63146 152 aa5.65□□□□□ -1.5
VPS39-207ENST00000563692 REG3GQ6UW15 175 aa5.65□□□□□ -1.5
VPS39-207ENST00000563692 KRTAP7-1Q8IUC3 87 aa5.65□□□□□ -1.5
VPS39-207ENST00000563692 VPS25Q9BRG1 176 aa5.65□□□□□ -1.5
VPS39-207ENST00000563692 CHTF8P0CG12 524 aa5.64□□□□□ -1.51
VPS39-207ENST00000563692 Q6ZQY7 126 aa5.64□□□□□ -1.51
VPS39-207ENST00000563692 RYR1P21817 5038 aa5.63□□□□□ -1.51
VPS39-207ENST00000563692 HSPG2P98160 4391 aa5.63□□□□□ -1.51
VPS39-207ENST00000563692 B5MCH6 92 aa5.63□□□□□ -1.51
VPS39-207ENST00000563692 FAM229AH3BQW9 127 aa5.63□□□□□ -1.51
VPS39-207ENST00000563692 XGP55808 180 aa5.63□□□□□ -1.51
VPS39-207ENST00000563692 Q6ZRX8 168 aa5.63□□□□□ -1.51
VPS39-207ENST00000563692 ACYP1P07311 99 aa5.62□□□□□ -1.51
VPS39-207ENST00000563692 Q5VSD8 79 aa5.62□□□□□ -1.51
VPS39-207ENST00000563692 SPACA4Q8TDM5 124 aa5.62□□□□□ -1.51
VPS39-207ENST00000563692 LAMTOR3Q9UHA4 124 aa5.62□□□□□ -1.51
VPS39-207ENST00000563692 KRTAP4-16G5E9R7 235 aaPredicted RBP5.61□□□□□ -1.51
VPS39-207ENST00000563692 SMR3BP02814 79 aaPredicted RBP5.61□□□□□ -1.51
VPS39-207ENST00000563692 PHF5AQ7RTV0 110 aaKnown RBP5.61□□□□□ -1.51
VPS39-207ENST00000563692 OBSCN-AS1Q96MR7 158 aa5.61□□□□□ -1.51
VPS39-207ENST00000563692 PCLOQ9Y6V0 5065 aa5.61□□□□□ -1.51
VPS39-207ENST00000563692 DNAH5Q8TE73 4624 aa5.61□□□□□ -1.51
VPS39-207ENST00000563692 HAMPP81172 84 aa5.6□□□□□ -1.51
VPS39-207ENST00000563692 RBM3P98179 157 aaKnown RBP5.6□□□□□ -1.51
VPS39-207ENST00000563692 FAM19A1Q7Z5A9 133 aa5.6□□□□□ -1.51
VPS39-207ENST00000563692 FAM240AA0A1B0GVK7 77 aa5.59□□□□□ -1.51
VPS39-207ENST00000563692 PDE6GP18545 87 aa5.59□□□□□ -1.51
VPS39-207ENST00000563692 C21orf62-AS1Q17RA5 79 aa5.59□□□□□ -1.51
VPS39-207ENST00000563692 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.59□□□□□ -1.51
VPS39-207ENST00000563692 H0Y9J4 135 aa5.58□□□□□ -1.52
VPS39-207ENST00000563692 PLA2G1BP04054 148 aaKnown RBP5.58□□□□□ -1.52
VPS39-207ENST00000563692 DEFB105AQ8NG35 78 aa5.58□□□□□ -1.52
VPS39-207ENST00000563692 DSCR8Q96T75 97 aa5.58□□□□□ -1.52
VPS39-207ENST00000563692 C14orf132Q9NPU4 83 aa5.58□□□□□ -1.52
VPS39-207ENST00000563692 PLAC8Q9NZF1 115 aa5.58□□□□□ -1.52
VPS39-207ENST00000563692 FAM30AQ9NZY2 134 aa5.58□□□□□ -1.52
VPS39-207ENST00000563692 PANO1I0J062 215 aa5.57□□□□□ -1.52
VPS39-207ENST00000563692 UBE2AP49459 152 aa5.57□□□□□ -1.52
VPS39-207ENST00000563692 NDUFV3P56181 108 aaKnown RBP5.57□□□□□ -1.52
VPS39-207ENST00000563692 GAGE2AQ6NT46 116 aa5.57□□□□□ -1.52
VPS39-207ENST00000563692 SIGMAR1Q99720 223 aa5.57□□□□□ -1.52
VPS39-207ENST00000563692 Q9BRP9 147 aa5.57□□□□□ -1.52
VPS39-207ENST00000563692 APOBP04114 4563 aaKnown RBP5.57□□□□□ -1.52
VPS39-207ENST00000563692 BCE1O60756 84 aa5.56□□□□□ -1.52
VPS39-207ENST00000563692 CCKP06307 115 aa5.56□□□□□ -1.52
VPS39-207ENST00000563692 LCE2DQ5TA82 110 aaPredicted RBP5.56□□□□□ -1.52
VPS39-207ENST00000563692 Q6ZSA8 131 aa5.56□□□□□ -1.52
VPS39-207ENST00000563692 SMCR5Q8TEV8 140 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms