RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 PPDPFQ9H3Y8 114 aa7.3□□□□□ -1.24
SHMT2-223ENST00000556689 HIGD1BQ9P298 99 aa7.3□□□□□ -1.24
SHMT2-223ENST00000556689 A0A0U1RRA0 63 aa7.29□□□□□ -1.24
SHMT2-223ENST00000556689 SMIM13P0DJ93 91 aa7.29□□□□□ -1.24
SHMT2-223ENST00000556689 HIST1H4GQ99525 98 aa7.29□□□□□ -1.24
SHMT2-223ENST00000556689 SPANXDQ9BXN6 97 aa7.28□□□□□ -1.24
SHMT2-223ENST00000556689 SPANXB1Q9NS25 103 aaPredicted RBP7.28□□□□□ -1.24
SHMT2-223ENST00000556689 SPANXCQ9NY87 97 aa7.28□□□□□ -1.24
SHMT2-223ENST00000556689 IGLV5-37A0A075B6J1 123 aa7.27□□□□□ -1.25
SHMT2-223ENST00000556689 TMEM238LA0A1B0GVL6 79 aa7.27□□□□□ -1.25
SHMT2-223ENST00000556689 A6NJY4 79 aa7.27□□□□□ -1.25
SHMT2-223ENST00000556689 IFITM1P13164 125 aa7.27□□□□□ -1.25
SHMT2-223ENST00000556689 RPL24P83731 157 aaKnown RBP7.27□□□□□ -1.25
SHMT2-223ENST00000556689 TAL2Q16559 108 aa7.27□□□□□ -1.25
SHMT2-223ENST00000556689 MIR7-3HGQ8N6C7 128 aa7.27□□□□□ -1.25
SHMT2-223ENST00000556689 NKAPP1Q8N9T2 125 aa7.27□□□□□ -1.25
SHMT2-223ENST00000556689 M0R143 59 aa7.26□□□□□ -1.25
SHMT2-223ENST00000556689 LINC01547P58512 204 aaPredicted RBP7.26□□□□□ -1.25
SHMT2-223ENST00000556689 HSD52Q0P140 79 aa7.26□□□□□ -1.25
SHMT2-223ENST00000556689 LCE2DQ5TA82 110 aaPredicted RBP7.26□□□□□ -1.25
SHMT2-223ENST00000556689 IGKV2-28A0A075B6P5 120 aa7.24□□□□□ -1.25
SHMT2-223ENST00000556689 IGKV2D-28P01615 120 aa7.24□□□□□ -1.25
SHMT2-223ENST00000556689 SPAG11AQ6PDA7 123 aa7.24□□□□□ -1.25
SHMT2-223ENST00000556689 LINC00337Q8N6G1 96 aa7.24□□□□□ -1.25
SHMT2-223ENST00000556689 DAND5Q8N907 189 aa7.24□□□□□ -1.25
SHMT2-223ENST00000556689 SND1-IT1Q9HBX3 110 aa7.24□□□□□ -1.25
SHMT2-223ENST00000556689 DDTP30046 118 aa7.23□□□□□ -1.25
SHMT2-223ENST00000556689 NPC2P61916 151 aa7.23□□□□□ -1.25
SHMT2-223ENST00000556689 FAM19A1Q7Z5A9 133 aa7.23□□□□□ -1.25
SHMT2-223ENST00000556689 FSIP2Q5CZC0 6907 aa7.22□□□□□ -1.25
SHMT2-223ENST00000556689 PRLHP81277 87 aa7.22□□□□□ -1.25
SHMT2-223ENST00000556689 C2orf91Q6ZV80 131 aa7.22□□□□□ -1.25
SHMT2-223ENST00000556689 FP248Q71RG6 208 aaPredicted RBP7.22□□□□□ -1.25
SHMT2-223ENST00000556689 C3orf22Q8N5N4 141 aa7.22□□□□□ -1.25
SHMT2-223ENST00000556689 LINC00308Q8TCZ7 52 aa7.22□□□□□ -1.25
SHMT2-223ENST00000556689 LITAFQ99732 161 aa7.22□□□□□ -1.25
SHMT2-223ENST00000556689 ADAMTSL4-AS1Q5T5F5 129 aa7.21□□□□□ -1.26
SHMT2-223ENST00000556689 CEND1Q8N111 149 aa7.21□□□□□ -1.26
SHMT2-223ENST00000556689 CRCT1Q9UGL9 99 aa7.21□□□□□ -1.26
SHMT2-223ENST00000556689 CBY1Q9Y3M2 126 aa7.21□□□□□ -1.26
SHMT2-223ENST00000556689 ASB16-AS1Q495Z4 193 aa7.2□□□□□ -1.26
SHMT2-223ENST00000556689 C4orf48Q5BLP8 95 aa7.2□□□□□ -1.26
SHMT2-223ENST00000556689 TMEM126AQ9H061 195 aa7.2□□□□□ -1.26
SHMT2-223ENST00000556689 A6NDN8 102 aa7.19□□□□□ -1.26
SHMT2-223ENST00000556689 PCP4L1A6NKN8 68 aa7.19□□□□□ -1.26
SHMT2-223ENST00000556689 NDUFC2O95298 119 aa7.19□□□□□ -1.26
SHMT2-223ENST00000556689 MUSTN1Q8IVN3 82 aa7.19□□□□□ -1.26
SHMT2-223ENST00000556689 RAB37Q96AX2 223 aa7.19□□□□□ -1.26
SHMT2-223ENST00000556689 LOC107984156A0A0G2JMH3 177 aa7.18□□□□□ -1.26
SHMT2-223ENST00000556689 M0R378 163 aa7.18□□□□□ -1.26
SHMT2-223ENST00000556689 S100A7L2Q5SY68 101 aa7.18□□□□□ -1.26
SHMT2-223ENST00000556689 ARL17AQ8IVW1 177 aa7.18□□□□□ -1.26
SHMT2-223ENST00000556689 NCR3O14931 201 aa7.17□□□□□ -1.26
SHMT2-223ENST00000556689 VPREB1P12018 145 aa7.17□□□□□ -1.26
SHMT2-223ENST00000556689 KRTAP13-3Q3SY46 172 aa7.17□□□□□ -1.26
SHMT2-223ENST00000556689 TRAV13-2A0A0B4J235 113 aa7.16□□□□□ -1.26
SHMT2-223ENST00000556689 TRBV10-2A0A0K0K1G8 114 aa7.16□□□□□ -1.26
SHMT2-223ENST00000556689 A4D1N5 150 aa7.16□□□□□ -1.26
SHMT2-223ENST00000556689 SEC61BP60468 96 aaKnown RBP7.16□□□□□ -1.26
SHMT2-223ENST00000556689 BATFQ16520 125 aa7.16□□□□□ -1.26
SHMT2-223ENST00000556689 OR13C6PQ8NH95 151 aa7.16□□□□□ -1.26
SHMT2-223ENST00000556689 HIGD2AQ9BW72 106 aa7.16□□□□□ -1.26
SHMT2-223ENST00000556689 HINT1P49773 126 aaPredicted RBP7.15□□□□□ -1.26
SHMT2-223ENST00000556689 KRTAP4-1Q9BYQ7 146 aa7.15□□□□□ -1.26
SHMT2-223ENST00000556689 NHP2Q9NX24 153 aaKnown RBP7.15□□□□□ -1.26
SHMT2-223ENST00000556689 Q1RN00 199 aa7.14□□□□□ -1.27
SHMT2-223ENST00000556689 SOSTDC1Q6X4U4 206 aa7.14□□□□□ -1.27
SHMT2-223ENST00000556689 SPRR4Q96PI1 79 aa7.14□□□□□ -1.27
SHMT2-223ENST00000556689 A0A0B4J2C4 111 aa7.13□□□□□ -1.27
SHMT2-223ENST00000556689 SPINK1P00995 79 aa7.12□□□□□ -1.27
SHMT2-223ENST00000556689 FXYD2P54710 66 aa7.12□□□□□ -1.27
SHMT2-223ENST00000556689 BVES-AS1Q5T3Y7 98 aa7.12□□□□□ -1.27
SHMT2-223ENST00000556689 Q8NBF4 154 aa7.12□□□□□ -1.27
SHMT2-223ENST00000556689 ZNF706Q9Y5V0 76 aaPredicted RBP7.12□□□□□ -1.27
SHMT2-223ENST00000556689 PRO1854Q9UHT4 67 aa7.11□□□□□ -1.27
SHMT2-223ENST00000556689 Q8NDZ9 215 aa7.1□□□□□ -1.27
SHMT2-223ENST00000556689 TRAV23DV6A0A075B6W5 121 aa7.09□□□□□ -1.27
SHMT2-223ENST00000556689 PRYO14603 147 aa7.09□□□□□ -1.27
SHMT2-223ENST00000556689 EIF4EBP3O60516 100 aaPredicted RBP7.09□□□□□ -1.27
SHMT2-223ENST00000556689 H7C2G1 150 aa7.08□□□□□ -1.28
SHMT2-223ENST00000556689 CFC1BP0CG36 223 aa7.08□□□□□ -1.28
SHMT2-223ENST00000556689 CFC1P0CG37 223 aa7.08□□□□□ -1.28
SHMT2-223ENST00000556689 LYRM7Q5U5X0 104 aa7.08□□□□□ -1.28
SHMT2-223ENST00000556689 TRBV10-3A0A0K0K1G6 114 aa7.07□□□□□ -1.28
SHMT2-223ENST00000556689 COX6CP09669 75 aa7.07□□□□□ -1.28
SHMT2-223ENST00000556689 PSMB2P49721 201 aa7.07□□□□□ -1.28
SHMT2-223ENST00000556689 VAMP3Q15836 100 aa7.07□□□□□ -1.28
SHMT2-223ENST00000556689 COL5A1-AS1Q5SY13 56 aa7.07□□□□□ -1.28
SHMT2-223ENST00000556689 A0A1B0GWB2 263 aa7.06□□□□□ -1.28
SHMT2-223ENST00000556689 K7ERJ3 54 aa7.06□□□□□ -1.28
SHMT2-223ENST00000556689 SNCGO76070 127 aa7.06□□□□□ -1.28
SHMT2-223ENST00000556689 IGLV6-57P01721 117 aa7.06□□□□□ -1.28
SHMT2-223ENST00000556689 SMCR5Q8TEV8 140 aa7.06□□□□□ -1.28
SHMT2-223ENST00000556689 ETDCA0A1B0GVM5 59 aa7.05□□□□□ -1.28
SHMT2-223ENST00000556689 ZNF73O43830 326 aaPredicted RBP7.04□□□□□ -1.28
SHMT2-223ENST00000556689 LCE2CQ5TA81 110 aa7.04□□□□□ -1.28
SHMT2-223ENST00000556689 RPS29P62273 56 aaKnown RBP7.03□□□□□ -1.28
SHMT2-223ENST00000556689 XP32Q5T750 250 aa7.03□□□□□ -1.28
SHMT2-223ENST00000556689 Q8N377 158 aa7.03□□□□□ -1.28
SHMT2-223ENST00000556689 SNHG12Q9BXW3 62 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 165 ms