RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 hADV29S1A0JD25 119 aa11.38□□□□□ -0.59
SHOX-204ENST00000554971 TRBV7-6A0A0J9YX20 115 aa11.37□□□□□ -0.59
SHOX-204ENST00000554971 Q6JHZ5 121 aa11.37□□□□□ -0.59
SHOX-204ENST00000554971 CAMK2N2Q96S95 79 aa11.36□□□□□ -0.59
SHOX-204ENST00000554971 RPL18AQ02543 176 aaKnown RBP11.35□□□□□ -0.59
SHOX-204ENST00000554971 LINC00526Q96FQ7 95 aa11.35□□□□□ -0.59
SHOX-204ENST00000554971 LRP1BQ9NZR2 4599 aa11.34□□□□□ -0.59
SHOX-204ENST00000554971 DYNC1H1Q14204 4646 aaKnown RBP11.34□□□□□ -0.59
SHOX-204ENST00000554971 TNP2Q05952 138 aa11.34□□□□□ -0.59
SHOX-204ENST00000554971 C1orf43Q9BWL3 253 aa11.34□□□□□ -0.59
SHOX-204ENST00000554971 TRAV23DV6A0A075B6W5 121 aa11.33□□□□□ -0.6
SHOX-204ENST00000554971 DIRC1Q969H9 104 aa11.33□□□□□ -0.6
SHOX-204ENST00000554971 LINC00846Q9NV44 126 aa11.33□□□□□ -0.6
SHOX-204ENST00000554971 FAM236AA0A1B0GUQ0 79 aa11.32□□□□□ -0.6
SHOX-204ENST00000554971 FAM236BA0A1B0GV22 79 aa11.32□□□□□ -0.6
SHOX-204ENST00000554971 IGKV2D-24A0A075B6R9 120 aa11.31□□□□□ -0.6
SHOX-204ENST00000554971 NDUFC2-KCTD14E9PQ53 114 aa11.31□□□□□ -0.6
SHOX-204ENST00000554971 M0R378 163 aa11.31□□□□□ -0.6
SHOX-204ENST00000554971 PDE6GP18545 87 aa11.31□□□□□ -0.6
SHOX-204ENST00000554971 ATP5EP2Q5VTU8 51 aa11.31□□□□□ -0.6
SHOX-204ENST00000554971 C15orf56Q8N910 161 aa11.31□□□□□ -0.6
SHOX-204ENST00000554971 TRBV10-3A0A0K0K1G6 114 aa11.3□□□□□ -0.6
SHOX-204ENST00000554971 LOC110117498A0A087WWA1 95 aa11.29□□□□□ -0.6
SHOX-204ENST00000554971 VPREB1P12018 145 aa11.29□□□□□ -0.6
SHOX-204ENST00000554971 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.29□□□□□ -0.6
SHOX-204ENST00000554971 LINC00336Q6ZUF6 198 aa11.29□□□□□ -0.6
SHOX-204ENST00000554971 LRCOL1A6NCL2 159 aa11.29□□□□□ -0.6
SHOX-204ENST00000554971 ZNF73O43830 326 aaPredicted RBP11.29□□□□□ -0.6
SHOX-204ENST00000554971 RBM3P98179 157 aaKnown RBP11.29□□□□□ -0.6
SHOX-204ENST00000554971 HIGD2BQ4VC39 106 aa11.29□□□□□ -0.6
SHOX-204ENST00000554971 A0A1B0GVY2 172 aa11.28□□□□□ -0.6
SHOX-204ENST00000554971 HIST1H4AP62805 103 aaKnown RBP11.28□□□□□ -0.6
SHOX-204ENST00000554971 Q6ZRU5 148 aa11.28□□□□□ -0.6
SHOX-204ENST00000554971 XAGE1AQ9HD64 81 aa11.28□□□□□ -0.6
SHOX-204ENST00000554971 CCDC179H3BU77 68 aa11.27□□□□□ -0.61
SHOX-204ENST00000554971 PSCAO43653 123 aa11.27□□□□□ -0.61
SHOX-204ENST00000554971 COX7BP24311 80 aa11.27□□□□□ -0.61
SHOX-204ENST00000554971 ELOF1P60002 83 aaKnown RBP11.26□□□□□ -0.61
SHOX-204ENST00000554971 RMI2Q96E14 147 aa11.26□□□□□ -0.61
SHOX-204ENST00000554971 A0A087WTM6 91 aa11.25□□□□□ -0.61
SHOX-204ENST00000554971 B5MCH6 92 aa11.25□□□□□ -0.61
SHOX-204ENST00000554971 ATOX1O00244 68 aa11.25□□□□□ -0.61
SHOX-204ENST00000554971 SYCNQ0VAF6 134 aa11.24□□□□□ -0.61
SHOX-204ENST00000554971 Q6ZQT0 140 aa11.23□□□□□ -0.61
SHOX-204ENST00000554971 Q6ZQY7 126 aa11.23□□□□□ -0.61
SHOX-204ENST00000554971 UBL5Q9BZL1 73 aa11.23□□□□□ -0.61
SHOX-204ENST00000554971 LAMTOR3Q9UHA4 124 aa11.23□□□□□ -0.61
SHOX-204ENST00000554971 DNAH8Q96JB1 4490 aa11.23□□□□□ -0.61
SHOX-204ENST00000554971 UQCRQO14949 82 aa11.22□□□□□ -0.61
SHOX-204ENST00000554971 TLX1NBP0CAT3 122 aa11.22□□□□□ -0.61
SHOX-204ENST00000554971 DSCR8Q96T75 97 aa11.21□□□□□ -0.61
SHOX-204ENST00000554971 APOBP04114 4563 aaKnown RBP11.21□□□□□ -0.62
SHOX-204ENST00000554971 KRTAP10-2P60368 255 aa11.21□□□□□ -0.62
SHOX-204ENST00000554971 FUSP35637 526 aaKnown RBP eCLIP11.2□□□□□ -0.62
SHOX-204ENST00000554971 C3orf22Q8N5N4 141 aa11.2□□□□□ -0.62
SHOX-204ENST00000554971 PLA2G2DQ9UNK4 145 aa11.2□□□□□ -0.62
SHOX-204ENST00000554971 IGKV3D-7A0A0C4DH55 119 aa11.19□□□□□ -0.62
SHOX-204ENST00000554971 Q6ZRP5 223 aa11.19□□□□□ -0.62
SHOX-204ENST00000554971 BIRC6Q9NR09 4857 aa11.18□□□□□ -0.62
SHOX-204ENST00000554971 USP17L23D6RBM5 183 aa11.17□□□□□ -0.62
SHOX-204ENST00000554971 LINC00528Q8N1L1 170 aa11.17□□□□□ -0.62
SHOX-204ENST00000554971 COX7CP15954 63 aa11.17□□□□□ -0.62
SHOX-204ENST00000554971 KCNQ1DNQ9H478 68 aa11.16□□□□□ -0.62
SHOX-204ENST00000554971 KIAA1109Q2LD37 5005 aa11.14□□□□□ -0.63
SHOX-204ENST00000554971 TRBV7-4A0A0J9YYF1 115 aa11.14□□□□□ -0.63
SHOX-204ENST00000554971 NKAPP1Q8N9T2 125 aa11.14□□□□□ -0.63
SHOX-204ENST00000554971 IGLV5-37A0A075B6J1 123 aa11.13□□□□□ -0.63
SHOX-204ENST00000554971 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.13□□□□□ -0.63
SHOX-204ENST00000554971 SS18L2Q9UHA2 77 aa11.11□□□□□ -0.63
SHOX-204ENST00000554971 HSPG2P98160 4391 aa11.11□□□□□ -0.63
SHOX-204ENST00000554971 BCE1O60756 84 aa11.11□□□□□ -0.63
SHOX-204ENST00000554971 C9orf153Q5TBE3 101 aa11.11□□□□□ -0.63
SHOX-204ENST00000554971 CRYGAP11844 174 aa11.1□□□□□ -0.63
SHOX-204ENST00000554971 SERP2Q8N6R1 65 aa11.1□□□□□ -0.63
SHOX-204ENST00000554971 CXCL6P80162 114 aa11.08□□□□□ -0.64
SHOX-204ENST00000554971 RYR1P21817 5038 aa11.08□□□□□ -0.64
SHOX-204ENST00000554971 C14orf177Q52M58 125 aa11.07□□□□□ -0.64
SHOX-204ENST00000554971 C7orf33Q8WU49 177 aa11.07□□□□□ -0.64
SHOX-204ENST00000554971 DHRS4-AS1Q9P1J3 65 aa11.07□□□□□ -0.64
SHOX-204ENST00000554971 PRYO14603 147 aa11.07□□□□□ -0.64
SHOX-204ENST00000554971 A0A087WVE0 104 aa11.06□□□□□ -0.64
SHOX-204ENST00000554971 IGLV5-52A0A0A0MRZ9 124 aa11.06□□□□□ -0.64
SHOX-204ENST00000554971 Q6ZVQ6 151 aa11.06□□□□□ -0.64
SHOX-204ENST00000554971 SERTAD4-AS1Q5TG53 156 aa11.05□□□□□ -0.64
SHOX-204ENST00000554971 C16orf90A8MZG2 172 aa11.04□□□□□ -0.64
SHOX-204ENST00000554971 LINC01547P58512 204 aaPredicted RBP11.04□□□□□ -0.64
SHOX-204ENST00000554971 CNBPP62633 177 aaKnown RBP11.04□□□□□ -0.64
SHOX-204ENST00000554971 FAT1Q14517 4588 aa11.04□□□□□ -0.64
SHOX-204ENST00000554971 LOC107984640A0A0U1RRK4 108 aa11.03□□□□□ -0.64
SHOX-204ENST00000554971 A0A1B0GW54 56 aa11.03□□□□□ -0.64
SHOX-204ENST00000554971 SPRR1AP35321 89 aa11.03□□□□□ -0.64
SHOX-204ENST00000554971 IGLV1-50A0A075B6I6 118 aa11.02□□□□□ -0.65
SHOX-204ENST00000554971 KRTAP10-1P60331 282 aa11.02□□□□□ -0.65
SHOX-204ENST00000554971 FAM19A1Q7Z5A9 133 aa11.01□□□□□ -0.65
SHOX-204ENST00000554971 SMIM20Q8N5G0 67 aa11.01□□□□□ -0.65
SHOX-204ENST00000554971 KRTAP4-16G5E9R7 235 aaPredicted RBP11□□□□□ -0.65
SHOX-204ENST00000554971 Q6ZRX8 168 aa11□□□□□ -0.65
SHOX-204ENST00000554971 C9orf163Q8N9P6 203 aa11□□□□□ -0.65
SHOX-204ENST00000554971 HAMPP81172 84 aa10.99□□□□□ -0.65
SHOX-204ENST00000554971 IGLV5-48A0A075B6I7 105 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms