RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 WFDC13Q8IUB5 93 aa3.81□□□□□ -1.8
LIMA1-203ENST00000547825 IGHV4-30-4P0DP06 118 aa3.81□□□□□ -1.8
LIMA1-203ENST00000547825 FHL2Q14192 279 aa3.81□□□□□ -1.8
LIMA1-203ENST00000547825 LINC01006Q8NI28 216 aa3.81□□□□□ -1.8
LIMA1-203ENST00000547825 NBEAL1Q6ZS30 2694 aa3.81□□□□□ -1.8
LIMA1-203ENST00000547825 MP68P56378 58 aa3.81□□□□□ -1.8
LIMA1-203ENST00000547825 ZNF702PQ9H963 129 aa3.81□□□□□ -1.8
LIMA1-203ENST00000547825 A0A087WZ39 114 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 TRBV10-3A0A0K0K1G6 114 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 PDE6GP18545 87 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 Q6ZVQ6 151 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 HIGD2AQ9BW72 106 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 SERP1Q9Y6X1 66 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 IGLV5-52A0A0A0MRZ9 124 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 IGKV2-24A0A0C4DH68 120 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 RPL37AP8A6NKH3 93 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 SPART-AS1P0CW21 52 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 DNAH1Q9P2D7 4330 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 FBN3Q75N90 2809 aa3.8□□□□□ -1.8
LIMA1-203ENST00000547825 LINC01547P58512 204 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-203ENST00000547825 COL7A1Q02388 2944 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 TRAV10A0A0B4J240 114 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 DNAJC9-AS1A6NH13 148 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 DEFB116Q30KQ4 102 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 CD164L2Q6UWJ8 174 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 LINC01561Q8N1V8 128 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 SPATA3Q8NHX4 192 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 COL6A5A8TX70 2615 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 TRBV7-6A0A0J9YX20 115 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 CDK2AP2O75956 126 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 APOC4P55056 127 aa3.79□□□□□ -1.8
LIMA1-203ENST00000547825 ZNF73O43830 326 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-203ENST00000547825 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-203ENST00000547825 F8WDY8 70 aa3.78□□□□□ -1.8
LIMA1-203ENST00000547825 KRTAP24-1Q3LI83 254 aa3.78□□□□□ -1.8
LIMA1-203ENST00000547825 IGHV3OR16-9A0A0B4J2B5 98 aa3.78□□□□□ -1.8
LIMA1-203ENST00000547825 H0Y9J4 135 aa3.78□□□□□ -1.8
LIMA1-203ENST00000547825 TMEM254Q8TBM7 123 aa3.78□□□□□ -1.8
LIMA1-203ENST00000547825 LINC00474Q9P2X8 69 aa3.78□□□□□ -1.8
LIMA1-203ENST00000547825 LINC00575Q6W349 94 aa3.78□□□□□ -1.8
LIMA1-203ENST00000547825 C11orf72Q8NBR9 251 aa3.78□□□□□ -1.8
LIMA1-203ENST00000547825 TEP1Q99973 2627 aaKnown RBP3.78□□□□□ -1.81
LIMA1-203ENST00000547825 BRI3O95415 125 aa3.77□□□□□ -1.81
LIMA1-203ENST00000547825 Q8IZM0 81 aa3.77□□□□□ -1.81
LIMA1-203ENST00000547825 TM2D3Q9BRN9 247 aa3.77□□□□□ -1.81
LIMA1-203ENST00000547825 FRAS1Q86XX4 4008 aa3.77□□□□□ -1.81
LIMA1-203ENST00000547825 KRTAP10-3P60369 221 aa3.77□□□□□ -1.81
LIMA1-203ENST00000547825 RPS28P62857 69 aaKnown RBP3.77□□□□□ -1.81
LIMA1-203ENST00000547825 PMAIP1Q13794 54 aa3.77□□□□□ -1.81
LIMA1-203ENST00000547825 LINC00336Q6ZUF6 198 aa3.77□□□□□ -1.81
LIMA1-203ENST00000547825 UBE2DNLQ8IWF7 75 aa3.77□□□□□ -1.81
LIMA1-203ENST00000547825 C16orf95Q9H693 158 aa3.77□□□□□ -1.81
LIMA1-203ENST00000547825 PRO0628Q9UI54 55 aa3.77□□□□□ -1.81
LIMA1-203ENST00000547825 CHKB-CPT1BH3BT56 60 aa3.76□□□□□ -1.81
LIMA1-203ENST00000547825 NDUFC1O43677 76 aa3.76□□□□□ -1.81
LIMA1-203ENST00000547825 MUC7Q8TAX7 377 aa3.76□□□□□ -1.81
LIMA1-203ENST00000547825 C22orf24Q9Y442 160 aa3.76□□□□□ -1.81
LIMA1-203ENST00000547825 MRPL55Q7Z7F7 128 aaKnown RBP3.76□□□□□ -1.81
LIMA1-203ENST00000547825 CYSTM1Q9H1C7 97 aa3.76□□□□□ -1.81
LIMA1-203ENST00000547825 A6NED7 52 aa3.75□□□□□ -1.81
LIMA1-203ENST00000547825 IGLV5-45A0A087WSX0 123 aa3.75□□□□□ -1.81
LIMA1-203ENST00000547825 LINC00208Q96KT6 92 aa3.75□□□□□ -1.81
LIMA1-203ENST00000547825 LCE4AQ5TA78 99 aa3.75□□□□□ -1.81
LIMA1-203ENST00000547825 RETNQ9HD89 108 aa3.74□□□□□ -1.81
LIMA1-203ENST00000547825 SYCNQ0VAF6 134 aa3.74□□□□□ -1.81
LIMA1-203ENST00000547825 IGKV4-1P06312 121 aa3.73□□□□□ -1.81
LIMA1-203ENST00000547825 KRTAP15-1Q3LI76 137 aa3.73□□□□□ -1.81
LIMA1-203ENST00000547825 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.73□□□□□ -1.81
LIMA1-203ENST00000547825 H3BQ85 93 aa3.73□□□□□ -1.81
LIMA1-203ENST00000547825 M0R378 163 aa3.73□□□□□ -1.81
LIMA1-203ENST00000547825 ESRGQ1W209 222 aa3.73□□□□□ -1.81
LIMA1-203ENST00000547825 SEC61GP60059 68 aa3.72□□□□□ -1.81
LIMA1-203ENST00000547825 COX17Q14061 63 aa3.72□□□□□ -1.81
LIMA1-203ENST00000547825 C9orf66Q5T8R8 295 aa3.72□□□□□ -1.81
LIMA1-203ENST00000547825 NDUFB1O75438 58 aa3.72□□□□□ -1.81
LIMA1-203ENST00000547825 C1orf137Q5JT78 98 aa3.72□□□□□ -1.81
LIMA1-203ENST00000547825 KPRPQ5T749 579 aaPredicted RBP3.72□□□□□ -1.81
LIMA1-203ENST00000547825 C2orf48Q96LS8 159 aa3.72□□□□□ -1.81
LIMA1-203ENST00000547825 STARD9Q9P2P6 4700 aa3.72□□□□□ -1.81
LIMA1-203ENST00000547825 M0R2N4 97 aa3.72□□□□□ -1.81
LIMA1-203ENST00000547825 SMIM29Q86T20 159 aa3.72□□□□□ -1.81
LIMA1-203ENST00000547825 IGLV5-37A0A075B6J1 123 aa3.71□□□□□ -1.82
LIMA1-203ENST00000547825 UBE2AP49459 152 aa3.71□□□□□ -1.82
LIMA1-203ENST00000547825 ATP5EP56381 51 aaPredicted RBP3.71□□□□□ -1.82
LIMA1-203ENST00000547825 Q6ZQT0 140 aa3.71□□□□□ -1.82
LIMA1-203ENST00000547825 PRR15LQ9BU68 103 aa3.71□□□□□ -1.82
LIMA1-203ENST00000547825 KRTAP9-6A0A140TA67 174 aa3.71□□□□□ -1.82
LIMA1-203ENST00000547825 LYRM9A8MSI8 78 aa3.71□□□□□ -1.82
LIMA1-203ENST00000547825 KRTAP9-7A8MTY7 169 aa3.71□□□□□ -1.82
LIMA1-203ENST00000547825 DNAH10Q8IVF4 4471 aa3.71□□□□□ -1.82
LIMA1-203ENST00000547825 PCOTHQ58A44 107 aa3.71□□□□□ -1.82
LIMA1-203ENST00000547825 KRTAP19-1Q8IUB9 90 aa3.71□□□□□ -1.82
LIMA1-203ENST00000547825 ALMS1Q8TCU4 4167 aa3.7□□□□□ -1.82
LIMA1-203ENST00000547825 IGLV9-49A0A0B4J1Y8 123 aa3.7□□□□□ -1.82
LIMA1-203ENST00000547825 LELP1Q5T871 98 aa3.7□□□□□ -1.82
LIMA1-203ENST00000547825 H7BZZ5 65 aa3.7□□□□□ -1.82
LIMA1-203ENST00000547825 Q6ZRU5 148 aa3.7□□□□□ -1.82
LIMA1-203ENST00000547825 A0A087WSZ3 146 aa3.69□□□□□ -1.82
LIMA1-203ENST00000547825 DEFB131BA0A096LNP1 70 aa3.69□□□□□ -1.82
LIMA1-203ENST00000547825 SACSQ9NZJ4 4579 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms