RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PET117Q6UWS5 81 aa6.45□□□□□ -1.38
VPS28-214ENST00000531032 LINC00337Q8N6G1 96 aa6.45□□□□□ -1.38
VPS28-214ENST00000531032 A0A0J9YXY3 114 aa6.44□□□□□ -1.38
VPS28-214ENST00000531032 C20orf202A1L168 122 aa6.44□□□□□ -1.38
VPS28-214ENST00000531032 KRTAP4-16G5E9R7 235 aaPredicted RBP6.44□□□□□ -1.38
VPS28-214ENST00000531032 Q8NBF4 154 aa6.44□□□□□ -1.38
VPS28-214ENST00000531032 KRTAP13-3Q3SY46 172 aa6.43□□□□□ -1.38
VPS28-214ENST00000531032 C4orf48Q5BLP8 95 aa6.43□□□□□ -1.38
VPS28-214ENST00000531032 TMA7Q9Y2S6 64 aaKnown RBP6.43□□□□□ -1.38
VPS28-214ENST00000531032 LOC107984156A0A0G2JMH3 177 aa6.42□□□□□ -1.38
VPS28-214ENST00000531032 ZNF815PA8K554 130 aa6.42□□□□□ -1.38
VPS28-214ENST00000531032 NDUFC2O95298 119 aa6.42□□□□□ -1.38
VPS28-214ENST00000531032 S100A2P29034 98 aa6.42□□□□□ -1.38
VPS28-214ENST00000531032 LINC00483Q53H64 154 aa6.42□□□□□ -1.38
VPS28-214ENST00000531032 ARL17AQ8IVW1 177 aa6.42□□□□□ -1.38
VPS28-214ENST00000531032 SMCR5Q8TEV8 140 aa6.42□□□□□ -1.38
VPS28-214ENST00000531032 TRAV23DV6A0A075B6W5 121 aa6.41□□□□□ -1.38
VPS28-214ENST00000531032 SPINK1P00995 79 aa6.41□□□□□ -1.38
VPS28-214ENST00000531032 CBY1Q9Y3M2 126 aa6.41□□□□□ -1.38
VPS28-214ENST00000531032 ASB16-AS1Q495Z4 193 aa6.4□□□□□ -1.38
VPS28-214ENST00000531032 ATOH7Q8N100 152 aa6.4□□□□□ -1.38
VPS28-214ENST00000531032 B5MCH6 92 aa6.39□□□□□ -1.39
VPS28-214ENST00000531032 HINT1P49773 126 aaPredicted RBP6.39□□□□□ -1.39
VPS28-214ENST00000531032 JOSD1Q15040 202 aaPredicted RBP6.39□□□□□ -1.39
VPS28-214ENST00000531032 GAGE2AQ6NT46 116 aa6.39□□□□□ -1.39
VPS28-214ENST00000531032 SOSTDC1Q6X4U4 206 aa6.39□□□□□ -1.39
VPS28-214ENST00000531032 SCGB1D4Q6XE38 83 aa6.39□□□□□ -1.39
VPS28-214ENST00000531032 OR13C6PQ8NH95 151 aa6.39□□□□□ -1.39
VPS28-214ENST00000531032 KRTAP9-6A0A140TA67 174 aa6.38□□□□□ -1.39
VPS28-214ENST00000531032 TIMM17BO60830 172 aa6.38□□□□□ -1.39
VPS28-214ENST00000531032 IGLV6-57P01721 117 aa6.38□□□□□ -1.39
VPS28-214ENST00000531032 ADAMTSL4-AS1Q5T5F5 129 aa6.38□□□□□ -1.39
VPS28-214ENST00000531032 Q6ZRX8 168 aa6.38□□□□□ -1.39
VPS28-214ENST00000531032 SPANXCQ9NY87 97 aa6.38□□□□□ -1.39
VPS28-214ENST00000531032 ZNF73O43830 326 aaPredicted RBP6.37□□□□□ -1.39
VPS28-214ENST00000531032 AKR1D1P51857 326 aa6.37□□□□□ -1.39
VPS28-214ENST00000531032 RPS29P62273 56 aaKnown RBP6.37□□□□□ -1.39
VPS28-214ENST00000531032 ANKRD39Q53RE8 183 aa6.37□□□□□ -1.39
VPS28-214ENST00000531032 LINC00308Q8TCZ7 52 aa6.37□□□□□ -1.39
VPS28-214ENST00000531032 TTTY13Q9BZ97 58 aa6.37□□□□□ -1.39
VPS28-214ENST00000531032 ERC2-IT1O76042 136 aa6.36□□□□□ -1.39
VPS28-214ENST00000531032 MOBPQ13875 183 aa6.36□□□□□ -1.39
VPS28-214ENST00000531032 IGLV9-49A0A0B4J1Y8 123 aa6.35□□□□□ -1.39
VPS28-214ENST00000531032 EIF4EBP3O60516 100 aaPredicted RBP6.35□□□□□ -1.39
VPS28-214ENST00000531032 SSBP3-AS1Q7Z2R9 100 aa6.35□□□□□ -1.39
VPS28-214ENST00000531032 Q8N377 158 aa6.35□□□□□ -1.39
VPS28-214ENST00000531032 COPS9Q8WXC6 57 aa6.35□□□□□ -1.39
VPS28-214ENST00000531032 LITAFQ99732 161 aa6.35□□□□□ -1.39
VPS28-214ENST00000531032 Q9BRP9 147 aa6.35□□□□□ -1.39
VPS28-214ENST00000531032 KRTAP4-1Q9BYQ7 146 aa6.35□□□□□ -1.39
VPS28-214ENST00000531032 SEC61BP60468 96 aaKnown RBP6.34□□□□□ -1.39
VPS28-214ENST00000531032 SPANXDQ9BXN6 97 aa6.34□□□□□ -1.39
VPS28-214ENST00000531032 SCGB1D1O95968 90 aa6.33□□□□□ -1.4
VPS28-214ENST00000531032 C9orf153Q5TBE3 101 aa6.33□□□□□ -1.4
VPS28-214ENST00000531032 LINC00518Q8N0U6 118 aa6.33□□□□□ -1.4
VPS28-214ENST00000531032 SLC25A20O43772 301 aa6.32□□□□□ -1.4
VPS28-214ENST00000531032 LINC01547P58512 204 aaPredicted RBP6.32□□□□□ -1.4
VPS28-214ENST00000531032 HSBP1L1C9JCN9 74 aa6.31□□□□□ -1.4
VPS28-214ENST00000531032 PCP2Q8IVA1 136 aa6.31□□□□□ -1.4
VPS28-214ENST00000531032 IFITM1P13164 125 aa6.3□□□□□ -1.4
VPS28-214ENST00000531032 PYY3Q5JQD4 70 aa6.3□□□□□ -1.4
VPS28-214ENST00000531032 XP32Q5T750 250 aa6.3□□□□□ -1.4
VPS28-214ENST00000531032 DHRS4-AS1Q9P1J3 65 aa6.3□□□□□ -1.4
VPS28-214ENST00000531032 COX7BP24311 80 aa6.29□□□□□ -1.4
VPS28-214ENST00000531032 C6orf99Q4VX62 202 aa6.29□□□□□ -1.4
VPS28-214ENST00000531032 SLC25A34Q6PIV7 304 aa6.29□□□□□ -1.4
VPS28-214ENST00000531032 Q6ZVH6 145 aa6.29□□□□□ -1.4
VPS28-214ENST00000531032 ST20-AS1Q8NBB2 130 aa6.29□□□□□ -1.4
VPS28-214ENST00000531032 A6NDN8 102 aa6.28□□□□□ -1.4
VPS28-214ENST00000531032 ELOF1P60002 83 aaKnown RBP6.26□□□□□ -1.41
VPS28-214ENST00000531032 LCE2DQ5TA82 110 aaPredicted RBP6.26□□□□□ -1.41
VPS28-214ENST00000531032 MUSTN1Q8IVN3 82 aa6.26□□□□□ -1.41
VPS28-214ENST00000531032 LAMTOR3Q9UHA4 124 aa6.25□□□□□ -1.41
VPS28-214ENST00000531032 TRAV13-2A0A0B4J235 113 aa6.24□□□□□ -1.41
VPS28-214ENST00000531032 A0A1B0GWB2 263 aa6.24□□□□□ -1.41
VPS28-214ENST00000531032 TAL2Q16559 108 aa6.24□□□□□ -1.41
VPS28-214ENST00000531032 SPATA45Q537H7 98 aa6.24□□□□□ -1.41
VPS28-214ENST00000531032 PAM16Q9Y3D7 125 aa6.24□□□□□ -1.41
VPS28-214ENST00000531032 LOC105371267A0A1B0GV96 52 aa6.23□□□□□ -1.41
VPS28-214ENST00000531032 SPRR1BP22528 89 aa6.23□□□□□ -1.41
VPS28-214ENST00000531032 LCE2CQ5TA81 110 aa6.23□□□□□ -1.41
VPS28-214ENST00000531032 DEFB105AQ8NG35 78 aa6.23□□□□□ -1.41
VPS28-214ENST00000531032 C14orf144Q96I85 54 aa6.23□□□□□ -1.41
VPS28-214ENST00000531032 TRBV7-6A0A0J9YX20 115 aa6.22□□□□□ -1.41
VPS28-214ENST00000531032 COX8AP10176 69 aa6.22□□□□□ -1.41
VPS28-214ENST00000531032 VAMP8Q9BV40 100 aa6.22□□□□□ -1.41
VPS28-214ENST00000531032 Q1RN00 199 aa6.21□□□□□ -1.42
VPS28-214ENST00000531032 KRTAP19-2Q3LHN2 52 aa6.21□□□□□ -1.42
VPS28-214ENST00000531032 LIMD2Q9BT23 127 aa6.21□□□□□ -1.42
VPS28-214ENST00000531032 NHP2Q9NX24 153 aaKnown RBP6.21□□□□□ -1.42
VPS28-214ENST00000531032 FSIP2Q5CZC0 6907 aa6.2□□□□□ -1.42
VPS28-214ENST00000531032 TEX49A0A1B0GTD5 131 aa6.2□□□□□ -1.42
VPS28-214ENST00000531032 A4D1N5 150 aa6.2□□□□□ -1.42
VPS28-214ENST00000531032 HRCT1Q6UXD1 115 aa6.2□□□□□ -1.42
VPS28-214ENST00000531032 DLEU1O43261 78 aa6.19□□□□□ -1.42
VPS28-214ENST00000531032 VAMP3Q15836 100 aa6.19□□□□□ -1.42
VPS28-214ENST00000531032 C2orf91Q6ZV80 131 aa6.19□□□□□ -1.42
VPS28-214ENST00000531032 SMIM11BQ8TCY0 68 aa6.19□□□□□ -1.42
VPS28-214ENST00000531032 PCOTHQ58A44 107 aa6.17□□□□□ -1.42
VPS28-214ENST00000531032 HIST1H4GQ99525 98 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms