RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 KRTAP4-16G5E9R7 235 aaPredicted RBP9.54□□□□□ -0.88
LSM1-205ENST00000523511 SCGB1D4Q6XE38 83 aa9.54□□□□□ -0.88
LSM1-205ENST00000523511 LINC00518Q8N0U6 118 aa9.54□□□□□ -0.88
LSM1-205ENST00000523511 LINC00308Q8TCZ7 52 aa9.54□□□□□ -0.88
LSM1-205ENST00000523511 S100A2P29034 98 aa9.53□□□□□ -0.88
LSM1-205ENST00000523511 SNRPEP62304 92 aaKnown RBP9.53□□□□□ -0.88
LSM1-205ENST00000523511 OR13C6PQ8NH95 151 aa9.53□□□□□ -0.88
LSM1-205ENST00000523511 ZNF73O43830 326 aaPredicted RBP9.51□□□□□ -0.89
LSM1-205ENST00000523511 SOSTDC1Q6X4U4 206 aa9.51□□□□□ -0.89
LSM1-205ENST00000523511 Q6ZRX8 168 aa9.51□□□□□ -0.89
LSM1-205ENST00000523511 S100A6P06703 90 aa9.5□□□□□ -0.89
LSM1-205ENST00000523511 GAGE2AQ6NT46 116 aa9.49□□□□□ -0.89
LSM1-205ENST00000523511 Q6ZVH6 145 aa9.49□□□□□ -0.89
LSM1-205ENST00000523511 LITAFQ99732 161 aa9.49□□□□□ -0.89
LSM1-205ENST00000523511 SPANXDQ9BXN6 97 aa9.49□□□□□ -0.89
LSM1-205ENST00000523511 C5orf52A6NGY3 159 aa9.48□□□□□ -0.89
LSM1-205ENST00000523511 IFITM1P13164 125 aa9.48□□□□□ -0.89
LSM1-205ENST00000523511 PPDPFQ9H3Y8 114 aa9.48□□□□□ -0.89
LSM1-205ENST00000523511 LRP2P98164 4655 aa9.47□□□□□ -0.89
LSM1-205ENST00000523511 LINC00483Q53H64 154 aa9.47□□□□□ -0.89
LSM1-205ENST00000523511 C3orf22Q8N5N4 141 aa9.47□□□□□ -0.89
LSM1-205ENST00000523511 HSBP1L1C9JCN9 74 aa9.46□□□□□ -0.9
LSM1-205ENST00000523511 EIF4EBP3O60516 100 aaPredicted RBP9.46□□□□□ -0.9
LSM1-205ENST00000523511 LCE2DQ5TA82 110 aaPredicted RBP9.46□□□□□ -0.9
LSM1-205ENST00000523511 SSBP3-AS1Q7Z2R9 100 aa9.45□□□□□ -0.9
LSM1-205ENST00000523511 ATOH7Q8N100 152 aa9.45□□□□□ -0.9
LSM1-205ENST00000523511 TTTY13Q9BZ97 58 aa9.45□□□□□ -0.9
LSM1-205ENST00000523511 Q9BRP9 147 aa9.44□□□□□ -0.9
LSM1-205ENST00000523511 DHRS4-AS1Q9P1J3 65 aa9.44□□□□□ -0.9
LSM1-205ENST00000523511 SPINK1P00995 79 aa9.43□□□□□ -0.9
LSM1-205ENST00000523511 ANKRD39Q53RE8 183 aa9.43□□□□□ -0.9
LSM1-205ENST00000523511 HIST3H2BBQ8N257 126 aa9.43□□□□□ -0.9
LSM1-205ENST00000523511 ERC2-IT1O76042 136 aa9.42□□□□□ -0.9
LSM1-205ENST00000523511 SLC25A34Q6PIV7 304 aa9.42□□□□□ -0.9
LSM1-205ENST00000523511 Q8NBF4 154 aa9.42□□□□□ -0.9
LSM1-205ENST00000523511 HIST1H2BLQ99880 126 aa9.42□□□□□ -0.9
LSM1-205ENST00000523511 IGLV9-49A0A0B4J1Y8 123 aa9.41□□□□□ -0.9
LSM1-205ENST00000523511 A6NDN8 102 aa9.39□□□□□ -0.91
LSM1-205ENST00000523511 COX7BP24311 80 aa9.39□□□□□ -0.91
LSM1-205ENST00000523511 PCP2Q8IVA1 136 aa9.39□□□□□ -0.91
LSM1-205ENST00000523511 IGLV7-46A0A075B6I9 117 aa9.38□□□□□ -0.91
LSM1-205ENST00000523511 MOBPQ13875 183 aa9.38□□□□□ -0.91
LSM1-205ENST00000523511 MUSTN1Q8IVN3 82 aa9.38□□□□□ -0.91
LSM1-205ENST00000523511 RETNLBQ9BQ08 111 aa9.38□□□□□ -0.91
LSM1-205ENST00000523511 TRAV13-2A0A0B4J235 113 aa9.37□□□□□ -0.91
LSM1-205ENST00000523511 TRBV7-6A0A0J9YX20 115 aa9.37□□□□□ -0.91
LSM1-205ENST00000523511 C6orf99Q4VX62 202 aa9.37□□□□□ -0.91
LSM1-205ENST00000523511 C9orf153Q5TBE3 101 aa9.36□□□□□ -0.91
LSM1-205ENST00000523511 FP248Q71RG6 208 aaPredicted RBP9.36□□□□□ -0.91
LSM1-205ENST00000523511 CDIP1Q9H305 208 aa9.36□□□□□ -0.91
LSM1-205ENST00000523511 RNF213Q63HN8 5207 aa9.35□□□□□ -0.91
LSM1-205ENST00000523511 ELOF1P60002 83 aaKnown RBP9.35□□□□□ -0.91
LSM1-205ENST00000523511 LAMTOR3Q9UHA4 124 aa9.35□□□□□ -0.91
LSM1-205ENST00000523511 A0A1B0GWB2 263 aa9.34□□□□□ -0.91
LSM1-205ENST00000523511 A4D1N5 150 aa9.34□□□□□ -0.91
LSM1-205ENST00000523511 SCGB1D1O95968 90 aa9.34□□□□□ -0.91
LSM1-205ENST00000523511 RPS29P62273 56 aaKnown RBP9.34□□□□□ -0.91
LSM1-205ENST00000523511 TAL2Q16559 108 aa9.34□□□□□ -0.91
LSM1-205ENST00000523511 TPRXLQ17RH7 258 aa9.33□□□□□ -0.92
LSM1-205ENST00000523511 ST20-AS1Q8NBB2 130 aa9.33□□□□□ -0.92
LSM1-205ENST00000523511 LPAP08519 4548 aa9.33□□□□□ -0.92
LSM1-205ENST00000523511 VAMP3Q15836 100 aa9.32□□□□□ -0.92
LSM1-205ENST00000523511 NHP2Q9NX24 153 aaKnown RBP9.32□□□□□ -0.92
LSM1-205ENST00000523511 SPRR1BP22528 89 aa9.31□□□□□ -0.92
LSM1-205ENST00000523511 SLC25A20O43772 301 aa9.3□□□□□ -0.92
LSM1-205ENST00000523511 TEX49A0A1B0GTD5 131 aa9.29□□□□□ -0.92
LSM1-205ENST00000523511 DEFB105AQ8NG35 78 aa9.28□□□□□ -0.92
LSM1-205ENST00000523511 A0A0U1RQV1 116 aa9.26□□□□□ -0.93
LSM1-205ENST00000523511 SMIM11BQ8TCY0 68 aa9.25□□□□□ -0.93
LSM1-205ENST00000523511 HIST1H4GQ99525 98 aa9.25□□□□□ -0.93
LSM1-205ENST00000523511 LIMD2Q9BT23 127 aa9.25□□□□□ -0.93
LSM1-205ENST00000523511 PRO1933Q9H354 126 aa9.24□□□□□ -0.93
LSM1-205ENST00000523511 Q8N377 158 aa9.23□□□□□ -0.93
LSM1-205ENST00000523511 DLEU1O43261 78 aa9.22□□□□□ -0.93
LSM1-205ENST00000523511 COX8AP10176 69 aa9.22□□□□□ -0.93
LSM1-205ENST00000523511 Q1RN00 199 aa9.21□□□□□ -0.94
LSM1-205ENST00000523511 IGLV5-48A0A075B6I7 105 aa9.19□□□□□ -0.94
LSM1-205ENST00000523511 CD164Q04900 197 aa9.19□□□□□ -0.94
LSM1-205ENST00000523511 H7C2G1 150 aa9.18□□□□□ -0.94
LSM1-205ENST00000523511 SNCGO76070 127 aa9.18□□□□□ -0.94
LSM1-205ENST00000523511 BVES-AS1Q5T3Y7 98 aa9.18□□□□□ -0.94
LSM1-205ENST00000523511 HRCT1Q6UXD1 115 aa9.17□□□□□ -0.94
LSM1-205ENST00000523511 VAMP8Q9BV40 100 aa9.17□□□□□ -0.94
LSM1-205ENST00000523511 hADV29S1A0JD25 119 aa9.16□□□□□ -0.94
LSM1-205ENST00000523511 F8WEM9 126 aa9.16□□□□□ -0.94
LSM1-205ENST00000523511 KRTAP13-3Q3SY46 172 aa9.16□□□□□ -0.94
LSM1-205ENST00000523511 LINC00575Q6W349 94 aa9.16□□□□□ -0.94
LSM1-205ENST00000523511 SPATA45Q537H7 98 aa9.15□□□□□ -0.94
LSM1-205ENST00000523511 C14orf144Q96I85 54 aa9.15□□□□□ -0.94
LSM1-205ENST00000523511 PAM16Q9Y3D7 125 aa9.15□□□□□ -0.94
LSM1-205ENST00000523511 RAB37Q96AX2 223 aa9.14□□□□□ -0.95
LSM1-205ENST00000523511 HIGD1BQ9P298 99 aa9.14□□□□□ -0.95
LSM1-205ENST00000523511 SMIM29Q86T20 159 aa9.13□□□□□ -0.95
LSM1-205ENST00000523511 LINC01547P58512 204 aaPredicted RBP9.12□□□□□ -0.95
LSM1-205ENST00000523511 SEC61BP60468 96 aaKnown RBP9.11□□□□□ -0.95
LSM1-205ENST00000523511 C12orf57Q99622 126 aa9.11□□□□□ -0.95
LSM1-205ENST00000523511 TMEM238LA0A1B0GVL6 79 aa9.1□□□□□ -0.95
LSM1-205ENST00000523511 A6NJY4 79 aa9.1□□□□□ -0.95
LSM1-205ENST00000523511 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.1□□□□□ -0.95
LSM1-205ENST00000523511 Q6ZQY7 126 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 161.3 ms