RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 Q96NJ1 140 aa8.84□□□□□ -0.99
TCOF1-214ENST00000515035 COL27A1Q8IZC6 1860 aaPredicted RBP8.82□□□□□ -1
TCOF1-214ENST00000515035 C8orf17Q9NRJ1 99 aa8.82□□□□□ -1
TCOF1-214ENST00000515035 C9orf129Q5T035 196 aaKnown RBP8.82□□□□□ -1
TCOF1-214ENST00000515035 LINC00588Q9Y4M8 146 aa8.82□□□□□ -1
TCOF1-214ENST00000515035 PCSK5Q92824 1860 aa8.82□□□□□ -1
TCOF1-214ENST00000515035 Q8N377 158 aa8.81□□□□□ -1
TCOF1-214ENST00000515035 TYMSOSQ8TAI1 123 aa8.81□□□□□ -1
TCOF1-214ENST00000515035 USP24Q9UPU5 2620 aa8.81□□□□□ -1
TCOF1-214ENST00000515035 CRIPTQ9P021 101 aa8.8□□□□□ -1
TCOF1-214ENST00000515035 WWC2-AS2Q96NR7 200 aa8.8□□□□□ -1
TCOF1-214ENST00000515035 RTL8CO15255 209 aa8.79□□□□□ -1
TCOF1-214ENST00000515035 A0A096LNT2 108 aa8.77□□□□□ -1.01
TCOF1-214ENST00000515035 NBDYA0A0U1RRE5 68 aa8.77□□□□□ -1.01
TCOF1-214ENST00000515035 DNAH10OSP0CZ25 163 aa8.77□□□□□ -1.01
TCOF1-214ENST00000515035 A0A0G2JQZ4 141 aa8.76□□□□□ -1.01
TCOF1-214ENST00000515035 A0A1W2PNN7 141 aa8.76□□□□□ -1.01
TCOF1-214ENST00000515035 CEP350Q5VT06 3117 aa8.76□□□□□ -1.01
TCOF1-214ENST00000515035 A0A1B0GVX0 72 aa8.76□□□□□ -1.01
TCOF1-214ENST00000515035 HECTD1Q9ULT8 2610 aa8.75□□□□□ -1.01
TCOF1-214ENST00000515035 APLNQ9ULZ1 77 aa8.75□□□□□ -1.01
TCOF1-214ENST00000515035 WIPF1O43516 503 aa8.74□□□□□ -1.01
TCOF1-214ENST00000515035 DSCR10P59022 87 aa8.74□□□□□ -1.01
TCOF1-214ENST00000515035 CDC42SE1Q9NRR8 79 aa8.74□□□□□ -1.01
TCOF1-214ENST00000515035 SPANXA2-OT1Q8N9U9 137 aa8.73□□□□□ -1.01
TCOF1-214ENST00000515035 PRR34Q9NV39 138 aa8.73□□□□□ -1.01
TCOF1-214ENST00000515035 CSNK1G2-AS1Q8NCQ2 148 aa8.71□□□□□ -1.01
TCOF1-214ENST00000515035 OBSCN-AS1Q96MR7 158 aa8.71□□□□□ -1.02
TCOF1-214ENST00000515035 C15orf56Q8N910 161 aa8.7□□□□□ -1.02
TCOF1-214ENST00000515035 A0A1W2PNM2 257 aa8.7□□□□□ -1.02
TCOF1-214ENST00000515035 K7EIL1 84 aa8.67□□□□□ -1.02
TCOF1-214ENST00000515035 Q1T7F1 81 aa8.67□□□□□ -1.02
TCOF1-214ENST00000515035 OCR1Q9BZK8 76 aa8.65□□□□□ -1.02
TCOF1-214ENST00000515035 MGAM2Q2M2H8 2515 aa8.65□□□□□ -1.03
TCOF1-214ENST00000515035 C19orf73Q9NVV2 129 aa8.64□□□□□ -1.03
TCOF1-214ENST00000515035 KRTAP10-11P60412 298 aa8.63□□□□□ -1.03
TCOF1-214ENST00000515035 FAM104AQ969W3 186 aa8.63□□□□□ -1.03
TCOF1-214ENST00000515035 PLA2G2DQ9UNK4 145 aa8.62□□□□□ -1.03
TCOF1-214ENST00000515035 KRTAP1-3Q8IUG1 177 aa8.62□□□□□ -1.03
TCOF1-214ENST00000515035 ZNF861PO60384 105 aa8.61□□□□□ -1.03
TCOF1-214ENST00000515035 TLX1NBP0CAT3 122 aa8.61□□□□□ -1.03
TCOF1-214ENST00000515035 PRR26Q8N8Z3 221 aa8.61□□□□□ -1.03
TCOF1-214ENST00000515035 GIG44P09565 113 aaPredicted RBP8.61□□□□□ -1.03
TCOF1-214ENST00000515035 IGLV5-48A0A075B6I7 105 aa8.6□□□□□ -1.03
TCOF1-214ENST00000515035 RBM12B-AS1Q9P1G2 102 aa8.6□□□□□ -1.03
TCOF1-214ENST00000515035 KRTAP10-3P60369 221 aa8.59□□□□□ -1.03
TCOF1-214ENST00000515035 BPTFQ12830 3046 aa8.58□□□□□ -1.04
TCOF1-214ENST00000515035 LINC00612Q8N6U2 182 aa8.57□□□□□ -1.04
TCOF1-214ENST00000515035 ZNF575Q86XF7 245 aa8.57□□□□□ -1.04
TCOF1-214ENST00000515035 ANAPC11Q9NYG5 84 aa8.57□□□□□ -1.04
TCOF1-214ENST00000515035 KRTAP1-1Q07627 177 aa8.56□□□□□ -1.04
TCOF1-214ENST00000515035 Q5XG85 94 aa8.56□□□□□ -1.04
TCOF1-214ENST00000515035 C9orf163Q8N9P6 203 aa8.56□□□□□ -1.04
TCOF1-214ENST00000515035 ATRQ13535 2644 aa8.56□□□□□ -1.04
TCOF1-214ENST00000515035 A0A0D9SG42 100 aa8.56□□□□□ -1.04
TCOF1-214ENST00000515035 Q8N1X5 172 aa8.54□□□□□ -1.04
TCOF1-214ENST00000515035 CR1P17927 2039 aa8.54□□□□□ -1.04
TCOF1-214ENST00000515035 PCNTO95613 3336 aa8.54□□□□□ -1.04
TCOF1-214ENST00000515035 C9orf92A6NGG3 77 aa8.54□□□□□ -1.04
TCOF1-214ENST00000515035 LINC00304Q8N9R0 145 aa8.54□□□□□ -1.04
TCOF1-214ENST00000515035 HELZ2Q9BYK8 2649 aaKnown RBP8.53□□□□□ -1.04
TCOF1-214ENST00000515035 Q75L30 129 aa8.52□□□□□ -1.05
TCOF1-214ENST00000515035 SPRR4Q96PI1 79 aa8.52□□□□□ -1.05
TCOF1-214ENST00000515035 FP248Q71RG6 208 aaPredicted RBP8.51□□□□□ -1.05
TCOF1-214ENST00000515035 LINC01554Q52M75 96 aa8.5□□□□□ -1.05
TCOF1-214ENST00000515035 IGLV7-46A0A075B6I9 117 aa8.5□□□□□ -1.05
TCOF1-214ENST00000515035 CYSTM1Q9H1C7 97 aa8.49□□□□□ -1.05
TCOF1-214ENST00000515035 FAM229BQ4G0N7 80 aa8.49□□□□□ -1.05
TCOF1-214ENST00000515035 LUZP6Q538Z0 58 aa8.49□□□□□ -1.05
TCOF1-214ENST00000515035 CHD7Q9P2D1 2997 aa8.48□□□□□ -1.05
TCOF1-214ENST00000515035 CASC10Q5T4H9 136 aa8.47□□□□□ -1.05
TCOF1-214ENST00000515035 Q8N9P0 234 aaPredicted RBP8.47□□□□□ -1.05
TCOF1-214ENST00000515035 PSORS1C2Q9UIG4 136 aa8.47□□□□□ -1.05
TCOF1-214ENST00000515035 MAST4O15021 2626 aa8.46□□□□□ -1.05
TCOF1-214ENST00000515035 H3BS24 57 aa8.46□□□□□ -1.06
TCOF1-214ENST00000515035 IGLV7-43P04211 117 aa8.45□□□□□ -1.06
TCOF1-214ENST00000515035 A0A0C4DFX4 3053 aa8.45□□□□□ -1.06
TCOF1-214ENST00000515035 IGLV5-37A0A075B6J1 123 aa8.45□□□□□ -1.06
TCOF1-214ENST00000515035 A0A087WTM6 91 aa8.45□□□□□ -1.06
TCOF1-214ENST00000515035 J3QL48 77 aa8.45□□□□□ -1.06
TCOF1-214ENST00000515035 FLNAP21333 2647 aaKnown RBP8.44□□□□□ -1.06
TCOF1-214ENST00000515035 PRAC1Q96KF2 57 aa8.44□□□□□ -1.06
TCOF1-214ENST00000515035 COX6B2Q6YFQ2 88 aa8.44□□□□□ -1.06
TCOF1-214ENST00000515035 LINC01558Q9Y6Z2 57 aa8.43□□□□□ -1.06
TCOF1-214ENST00000515035 CNBPP62633 177 aaKnown RBP8.42□□□□□ -1.06
TCOF1-214ENST00000515035 A0A1B0GU33 70 aa8.4□□□□□ -1.06
TCOF1-214ENST00000515035 ITPR3Q14573 2671 aa8.4□□□□□ -1.06
TCOF1-214ENST00000515035 HRES1P13985 223 aa8.4□□□□□ -1.06
TCOF1-214ENST00000515035 FLG2Q5D862 2391 aaPredicted RBP8.38□□□□□ -1.07
TCOF1-214ENST00000515035 C5orf42Q9H799 3197 aa8.38□□□□□ -1.07
TCOF1-214ENST00000515035 Q5VV11 94 aa8.38□□□□□ -1.07
TCOF1-214ENST00000515035 CFAP46Q8IYW2 2715 aa8.35□□□□□ -1.07
TCOF1-214ENST00000515035 AKAP13Q12802 2813 aa8.33□□□□□ -1.08
TCOF1-214ENST00000515035 CHD9Q3L8U1 2897 aa8.33□□□□□ -1.08
TCOF1-214ENST00000515035 MMP24-AS1A0A0U1RRL7 71 aa8.33□□□□□ -1.08
TCOF1-214ENST00000515035 SMR3BP02814 79 aaPredicted RBP8.32□□□□□ -1.08
TCOF1-214ENST00000515035 OXTP01178 125 aa8.32□□□□□ -1.08
TCOF1-214ENST00000515035 CSAG1Q6PB30 78 aa8.31□□□□□ -1.08
TCOF1-214ENST00000515035 SPINK7P58062 85 aa8.3□□□□□ -1.08
TCOF1-214ENST00000515035 Q8NDZ9 215 aa8.27□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms