RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 IGFL1Q6UW32 110 aa10.9□□□□□ -0.66
PCDHA1-203ENST00000504120 PLA2G1BP04054 148 aaKnown RBP10.88□□□□□ -0.67
PCDHA1-203ENST00000504120 TLX1NBP0CAT3 122 aa10.88□□□□□ -0.67
PCDHA1-203ENST00000504120 C9orf129Q5T035 196 aaKnown RBP10.87□□□□□ -0.67
PCDHA1-203ENST00000504120 ATP11AUNQ6ZP68 121 aa10.87□□□□□ -0.67
PCDHA1-203ENST00000504120 PLA2G2DQ9UNK4 145 aa10.87□□□□□ -0.67
PCDHA1-203ENST00000504120 KRTAP10-3P60369 221 aa10.86□□□□□ -0.67
PCDHA1-203ENST00000504120 Q8N377 158 aa10.86□□□□□ -0.67
PCDHA1-203ENST00000504120 PRR15Q8IV56 129 aa10.85□□□□□ -0.67
PCDHA1-203ENST00000504120 TRANK1O15050 2925 aa10.85□□□□□ -0.67
PCDHA1-203ENST00000504120 SSBP3-AS1Q7Z2R9 100 aa10.83□□□□□ -0.68
PCDHA1-203ENST00000504120 ZNF861PO60384 105 aa10.83□□□□□ -0.68
PCDHA1-203ENST00000504120 C8orf17Q9NRJ1 99 aa10.83□□□□□ -0.68
PCDHA1-203ENST00000504120 COA5Q86WW8 74 aa10.82□□□□□ -0.68
PCDHA1-203ENST00000504120 F8P00451 2351 aa10.81□□□□□ -0.68
PCDHA1-203ENST00000504120 KLKP1Q107X0 134 aa10.81□□□□□ -0.68
PCDHA1-203ENST00000504120 KRTAP1-3Q8IUG1 177 aa10.81□□□□□ -0.68
PCDHA1-203ENST00000504120 C9orf163Q8N9P6 203 aa10.8□□□□□ -0.68
PCDHA1-203ENST00000504120 C5orf42Q9H799 3197 aa10.8□□□□□ -0.68
PCDHA1-203ENST00000504120 IGLV8-61A0A075B6I0 122 aa10.78□□□□□ -0.68
PCDHA1-203ENST00000504120 A0A1B0GVX0 72 aa10.78□□□□□ -0.68
PCDHA1-203ENST00000504120 CYP4F30PQ9H0H9 118 aa10.78□□□□□ -0.68
PCDHA1-203ENST00000504120 A0A087WTM6 91 aa10.78□□□□□ -0.68
PCDHA1-203ENST00000504120 PCNTO95613 3336 aa10.77□□□□□ -0.69
PCDHA1-203ENST00000504120 FLNBO75369 2602 aaKnown RBP10.76□□□□□ -0.69
PCDHA1-203ENST00000504120 DSCR10P59022 87 aa10.75□□□□□ -0.69
PCDHA1-203ENST00000504120 A8MUN3 132 aa10.74□□□□□ -0.69
PCDHA1-203ENST00000504120 LINC01600Q96MT4 127 aa10.74□□□□□ -0.69
PCDHA1-203ENST00000504120 LINC00304Q8N9R0 145 aa10.73□□□□□ -0.69
PCDHA1-203ENST00000504120 KRTAP1-1Q07627 177 aa10.71□□□□□ -0.69
PCDHA1-203ENST00000504120 BPTFQ12830 3046 aa10.71□□□□□ -0.69
PCDHA1-203ENST00000504120 CNBPP62633 177 aaKnown RBP10.71□□□□□ -0.69
PCDHA1-203ENST00000504120 UQCR11O14957 56 aa10.71□□□□□ -0.7
PCDHA1-203ENST00000504120 HECTD1Q9ULT8 2610 aa10.7□□□□□ -0.7
PCDHA1-203ENST00000504120 RANBP2P49792 3224 aaKnown RBP10.69□□□□□ -0.7
PCDHA1-203ENST00000504120 A0A1W2PNN7 141 aa10.69□□□□□ -0.7
PCDHA1-203ENST00000504120 A0A0G2JQZ4 141 aa10.69□□□□□ -0.7
PCDHA1-203ENST00000504120 IGLV7-43P04211 117 aa10.67□□□□□ -0.7
PCDHA1-203ENST00000504120 OBSCN-AS1Q96MR7 158 aa10.67□□□□□ -0.7
PCDHA1-203ENST00000504120 APLNQ9ULZ1 77 aa10.67□□□□□ -0.7
PCDHA1-203ENST00000504120 H7BZZ5 65 aa10.67□□□□□ -0.7
PCDHA1-203ENST00000504120 A0A1W2PNM2 257 aa10.66□□□□□ -0.7
PCDHA1-203ENST00000504120 SPRR4Q96PI1 79 aa10.66□□□□□ -0.7
PCDHA1-203ENST00000504120 CASC10Q5T4H9 136 aa10.65□□□□□ -0.7
PCDHA1-203ENST00000504120 ZNF575Q86XF7 245 aa10.65□□□□□ -0.7
PCDHA1-203ENST00000504120 IGLV5-37A0A075B6J1 123 aa10.64□□□□□ -0.71
PCDHA1-203ENST00000504120 PSORS1C2Q9UIG4 136 aa10.64□□□□□ -0.71
PCDHA1-203ENST00000504120 J3QL48 77 aa10.63□□□□□ -0.71
PCDHA1-203ENST00000504120 ANAPC11Q9NYG5 84 aa10.62□□□□□ -0.71
PCDHA1-203ENST00000504120 IGLV5-48A0A075B6I7 105 aa10.61□□□□□ -0.71
PCDHA1-203ENST00000504120 ZNF292O60281 2723 aa10.6□□□□□ -0.71
PCDHA1-203ENST00000504120 MIR22HGQ0VDD5 57 aa10.58□□□□□ -0.72
PCDHA1-203ENST00000504120 C9orf92A6NGG3 77 aa10.58□□□□□ -0.72
PCDHA1-203ENST00000504120 FLNAP21333 2647 aaKnown RBP10.57□□□□□ -0.72
PCDHA1-203ENST00000504120 LINC00336Q6ZUF6 198 aa10.56□□□□□ -0.72
PCDHA1-203ENST00000504120 SPANXA2-OT1Q8N9U9 137 aa10.56□□□□□ -0.72
PCDHA1-203ENST00000504120 SMR3BP02814 79 aaPredicted RBP10.54□□□□□ -0.72
PCDHA1-203ENST00000504120 SPINT4Q6UDR6 99 aa10.54□□□□□ -0.72
PCDHA1-203ENST00000504120 COX6B2Q6YFQ2 88 aa10.53□□□□□ -0.72
PCDHA1-203ENST00000504120 ITPR3Q14573 2671 aa10.51□□□□□ -0.73
PCDHA1-203ENST00000504120 HELZ2Q9BYK8 2649 aaKnown RBP10.5□□□□□ -0.73
PCDHA1-203ENST00000504120 MGAM2Q2M2H8 2515 aa10.49□□□□□ -0.73
PCDHA1-203ENST00000504120 FAM104AQ969W3 186 aa10.49□□□□□ -0.73
PCDHA1-203ENST00000504120 USP24Q9UPU5 2620 aa10.48□□□□□ -0.73
PCDHA1-203ENST00000504120 MKI67P46013 3256 aaKnown RBP10.47□□□□□ -0.73
PCDHA1-203ENST00000504120 LAMA3Q16787 3333 aa10.46□□□□□ -0.73
PCDHA1-203ENST00000504120 CRIPTQ9P021 101 aa10.46□□□□□ -0.74
PCDHA1-203ENST00000504120 CD164Q04900 197 aa10.44□□□□□ -0.74
PCDHA1-203ENST00000504120 OCR1Q9BZK8 76 aa10.44□□□□□ -0.74
PCDHA1-203ENST00000504120 WIPF1O43516 503 aa10.42□□□□□ -0.74
PCDHA1-203ENST00000504120 RBM12B-AS1Q9P1G2 102 aa10.42□□□□□ -0.74
PCDHA1-203ENST00000504120 CFAP46Q8IYW2 2715 aa10.41□□□□□ -0.74
PCDHA1-203ENST00000504120 Q8N1X5 172 aa10.38□□□□□ -0.75
PCDHA1-203ENST00000504120 TNP2Q05952 138 aa10.36□□□□□ -0.75
PCDHA1-203ENST00000504120 CR1P17927 2039 aa10.36□□□□□ -0.75
PCDHA1-203ENST00000504120 CENPEQ02224 2701 aa10.36□□□□□ -0.75
PCDHA1-203ENST00000504120 MGAQ8IWI9 3026 aa10.35□□□□□ -0.75
PCDHA1-203ENST00000504120 KTN1-AS1Q86SY8 53 aa10.35□□□□□ -0.75
PCDHA1-203ENST00000504120 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.34□□□□□ -0.75
PCDHA1-203ENST00000504120 ATRQ13535 2644 aa10.34□□□□□ -0.75
PCDHA1-203ENST00000504120 CDC42SE1Q9NRR8 79 aa10.34□□□□□ -0.75
PCDHA1-203ENST00000504120 Q1T7F1 81 aa10.3□□□□□ -0.76
PCDHA1-203ENST00000504120 BRCA2P51587 3418 aa10.29□□□□□ -0.76
PCDHA1-203ENST00000504120 IGLV7-46A0A075B6I9 117 aa10.29□□□□□ -0.76
PCDHA1-203ENST00000504120 FAM229BQ4G0N7 80 aa10.28□□□□□ -0.76
PCDHA1-203ENST00000504120 LCA10Q71F78 164 aa10.28□□□□□ -0.76
PCDHA1-203ENST00000504120 SPRR1AP35321 89 aa10.28□□□□□ -0.76
PCDHA1-203ENST00000504120 PRR26Q8N8Z3 221 aa10.27□□□□□ -0.76
PCDHA1-203ENST00000504120 AKAP13Q12802 2813 aa10.26□□□□□ -0.77
PCDHA1-203ENST00000504120 A0A0D9SG42 100 aa10.25□□□□□ -0.77
PCDHA1-203ENST00000504120 PLAC8Q9NZF1 115 aa10.25□□□□□ -0.77
PCDHA1-203ENST00000504120 Q8NDZ9 215 aa10.24□□□□□ -0.77
PCDHA1-203ENST00000504120 MAST4O15021 2626 aa10.24□□□□□ -0.77
PCDHA1-203ENST00000504120 LINC01554Q52M75 96 aa10.22□□□□□ -0.77
PCDHA1-203ENST00000504120 HRES1P13985 223 aa10.22□□□□□ -0.77
PCDHA1-203ENST00000504120 MMP24-AS1A0A0U1RRL7 71 aa10.21□□□□□ -0.77
PCDHA1-203ENST00000504120 PRUNE2Q8WUY3 3088 aa10.21□□□□□ -0.77
PCDHA1-203ENST00000504120 Q6ZSA8 131 aa10.19□□□□□ -0.78
PCDHA1-203ENST00000504120 SPRR1BP22528 89 aa10.18□□□□□ -0.78
PCDHA1-203ENST00000504120 LAMA2P24043 3122 aaKnown RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms