RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 IGKV3D-7A0A0C4DH55 119 aa7.84□□□□□ -1.15
NUP54-202ENST00000502850 CCDC179H3BU77 68 aa7.83□□□□□ -1.16
NUP54-202ENST00000502850 PRYO14603 147 aa7.83□□□□□ -1.16
NUP54-202ENST00000502850 UQCRQO14949 82 aa7.82□□□□□ -1.16
NUP54-202ENST00000502850 B5MCH6 92 aa7.81□□□□□ -1.16
NUP54-202ENST00000502850 TRBV7-4A0A0J9YYF1 115 aa7.81□□□□□ -1.16
NUP54-202ENST00000502850 LOC107984640A0A0U1RRK4 108 aa7.81□□□□□ -1.16
NUP54-202ENST00000502850 C7orf33Q8WU49 177 aa7.81□□□□□ -1.16
NUP54-202ENST00000502850 WWC2-AS2Q96NR7 200 aa7.81□□□□□ -1.16
NUP54-202ENST00000502850 DHRS4-AS1Q9P1J3 65 aa7.81□□□□□ -1.16
NUP54-202ENST00000502850 C3orf22Q8N5N4 141 aa7.8□□□□□ -1.16
NUP54-202ENST00000502850 COX7CP15954 63 aa7.78□□□□□ -1.16
NUP54-202ENST00000502850 SERTAD4-AS1Q5TG53 156 aa7.78□□□□□ -1.16
NUP54-202ENST00000502850 CXCL6P80162 114 aa7.77□□□□□ -1.17
NUP54-202ENST00000502850 C9orf153Q5TBE3 101 aa7.77□□□□□ -1.17
NUP54-202ENST00000502850 ETDCA0A1B0GVM5 59 aa7.76□□□□□ -1.17
NUP54-202ENST00000502850 C14orf177Q52M58 125 aa7.76□□□□□ -1.17
NUP54-202ENST00000502850 Q6ZRX8 168 aa7.76□□□□□ -1.17
NUP54-202ENST00000502850 UBE2DNLQ8IWF7 75 aa7.76□□□□□ -1.17
NUP54-202ENST00000502850 PKIGQ9Y2B9 76 aa7.76□□□□□ -1.17
NUP54-202ENST00000502850 IGLV1-50A0A075B6I6 118 aa7.75□□□□□ -1.17
NUP54-202ENST00000502850 SPRR1AP35321 89 aa7.75□□□□□ -1.17
NUP54-202ENST00000502850 Q6ZVQ6 151 aa7.75□□□□□ -1.17
NUP54-202ENST00000502850 BCE1O60756 84 aa7.74□□□□□ -1.17
NUP54-202ENST00000502850 CASC10Q5T4H9 136 aa7.74□□□□□ -1.17
NUP54-202ENST00000502850 MRPL55Q7Z7F7 128 aaKnown RBP7.74□□□□□ -1.17
NUP54-202ENST00000502850 SERP2Q8N6R1 65 aa7.74□□□□□ -1.17
NUP54-202ENST00000502850 A0A1B0GW54 56 aa7.74□□□□□ -1.17
NUP54-202ENST00000502850 CNBPP62633 177 aaKnown RBP7.74□□□□□ -1.17
NUP54-202ENST00000502850 A0A087WVE0 104 aa7.73□□□□□ -1.17
NUP54-202ENST00000502850 PSCAO43653 123 aa7.73□□□□□ -1.17
NUP54-202ENST00000502850 LINC01547P58512 204 aaPredicted RBP7.73□□□□□ -1.17
NUP54-202ENST00000502850 KRTAP4-16G5E9R7 235 aaPredicted RBP7.72□□□□□ -1.17
NUP54-202ENST00000502850 CRYGAP11844 174 aa7.72□□□□□ -1.17
NUP54-202ENST00000502850 SS18L2Q9UHA2 77 aa7.72□□□□□ -1.17
NUP54-202ENST00000502850 HUWE1Q7Z6Z7 4374 aaKnown RBP7.72□□□□□ -1.17
NUP54-202ENST00000502850 HAMPP81172 84 aa7.71□□□□□ -1.17
NUP54-202ENST00000502850 SMIM20Q8N5G0 67 aa7.71□□□□□ -1.17
NUP54-202ENST00000502850 APLNQ9ULZ1 77 aa7.71□□□□□ -1.17
NUP54-202ENST00000502850 C3orf84H3BNL1 204 aa7.7□□□□□ -1.18
NUP54-202ENST00000502850 FAM19A5Q7Z5A7 132 aaPredicted RBP7.7□□□□□ -1.18
NUP54-202ENST00000502850 IGLV5-48A0A075B6I7 105 aa7.7□□□□□ -1.18
NUP54-202ENST00000502850 FAM168BA1KXE4 195 aa7.7□□□□□ -1.18
NUP54-202ENST00000502850 RPL37AP8A6NKH3 93 aa7.7□□□□□ -1.18
NUP54-202ENST00000502850 C16orf90A8MZG2 172 aa7.7□□□□□ -1.18
NUP54-202ENST00000502850 NUPR2A6NF83 97 aa7.69□□□□□ -1.18
NUP54-202ENST00000502850 M0R2N4 97 aa7.69□□□□□ -1.18
NUP54-202ENST00000502850 REG3GQ6UW15 175 aa7.69□□□□□ -1.18
NUP54-202ENST00000502850 FAM19A1Q7Z5A9 133 aa7.69□□□□□ -1.18
NUP54-202ENST00000502850 Q8N377 158 aa7.69□□□□□ -1.18
NUP54-202ENST00000502850 DNAH9Q9NYC9 4486 aa7.69□□□□□ -1.18
NUP54-202ENST00000502850 DNAH1Q9P2D7 4330 aa7.69□□□□□ -1.18
NUP54-202ENST00000502850 FUSP35637 526 aaKnown RBP eCLIP7.67□□□□□ -1.18
NUP54-202ENST00000502850 STAB2Q8WWQ8 2551 aa7.67□□□□□ -1.18
NUP54-202ENST00000502850 DEFB105AQ8NG35 78 aa7.67□□□□□ -1.18
NUP54-202ENST00000502850 Q9BRP9 147 aa7.67□□□□□ -1.18
NUP54-202ENST00000502850 UBE2BP63146 152 aa7.66□□□□□ -1.18
NUP54-202ENST00000502850 KRTAP7-1Q8IUC3 87 aa7.66□□□□□ -1.18
NUP54-202ENST00000502850 KRTAP1-5Q9BYS1 174 aa7.66□□□□□ -1.18
NUP54-202ENST00000502850 NREPQ16612 68 aa7.65□□□□□ -1.18
NUP54-202ENST00000502850 A0A096LNI7 61 aa7.63□□□□□ -1.19
NUP54-202ENST00000502850 TNP2Q05952 138 aa7.63□□□□□ -1.19
NUP54-202ENST00000502850 TRAV7A0A075B6U4 112 aa7.63□□□□□ -1.19
NUP54-202ENST00000502850 F8WEM9 126 aa7.63□□□□□ -1.19
NUP54-202ENST00000502850 TMEM258P61165 79 aa7.62□□□□□ -1.19
NUP54-202ENST00000502850 C1orf137Q5JT78 98 aa7.62□□□□□ -1.19
NUP54-202ENST00000502850 LINC00474Q9P2X8 69 aa7.62□□□□□ -1.19
NUP54-202ENST00000502850 IGKV2-24A0A0C4DH68 120 aa7.61□□□□□ -1.19
NUP54-202ENST00000502850 NBDYA0A0U1RRE5 68 aa7.61□□□□□ -1.19
NUP54-202ENST00000502850 Q8NBF4 154 aa7.61□□□□□ -1.19
NUP54-202ENST00000502850 KMT2CQ8NEZ4 4911 aaKnown RBP7.61□□□□□ -1.19
NUP54-202ENST00000502850 BPY2O14599 106 aa7.6□□□□□ -1.19
NUP54-202ENST00000502850 ST20-AS1Q8NBB2 130 aa7.6□□□□□ -1.19
NUP54-202ENST00000502850 C9orf163Q8N9P6 203 aa7.59□□□□□ -1.19
NUP54-202ENST00000502850 SPRR4Q96PI1 79 aa7.59□□□□□ -1.19
NUP54-202ENST00000502850 DYNC2H1Q8NCM8 4307 aaKnown RBP7.59□□□□□ -1.19
NUP54-202ENST00000502850 H0Y9J4 135 aa7.58□□□□□ -1.2
NUP54-202ENST00000502850 TENM2Q9NT68 2774 aa7.57□□□□□ -1.2
NUP54-202ENST00000502850 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.57□□□□□ -1.2
NUP54-202ENST00000502850 A0A1W2PNN7 141 aa7.57□□□□□ -1.2
NUP54-202ENST00000502850 ERC2-IT1O76042 136 aa7.57□□□□□ -1.2
NUP54-202ENST00000502850 LCE6AA0A183 80 aa7.56□□□□□ -1.2
NUP54-202ENST00000502850 SCXQ7RTU7 201 aa7.56□□□□□ -1.2
NUP54-202ENST00000502850 A0A1W2PNM2 257 aa7.56□□□□□ -1.2
NUP54-202ENST00000502850 LRCOL1A6NCL2 159 aa7.56□□□□□ -1.2
NUP54-202ENST00000502850 IGKV4-1P06312 121 aa7.55□□□□□ -1.2
NUP54-202ENST00000502850 IGLV8-61A0A075B6I0 122 aa7.54□□□□□ -1.2
NUP54-202ENST00000502850 PRLHP81277 87 aa7.53□□□□□ -1.2
NUP54-202ENST00000502850 SMIM29Q86T20 159 aa7.53□□□□□ -1.2
NUP54-202ENST00000502850 LINC00476Q8WZB0 136 aa7.53□□□□□ -1.2
NUP54-202ENST00000502850 J3KT08 172 aa7.52□□□□□ -1.2
NUP54-202ENST00000502850 Q6ZRN7 208 aaPredicted RBP7.52□□□□□ -1.2
NUP54-202ENST00000502850 C20orf197Q8N268 126 aa7.52□□□□□ -1.2
NUP54-202ENST00000502850 HIGD2AQ9BW72 106 aa7.52□□□□□ -1.2
NUP54-202ENST00000502850 SPRR1BP22528 89 aa7.52□□□□□ -1.21
NUP54-202ENST00000502850 RPS28P62857 69 aaKnown RBP7.52□□□□□ -1.21
NUP54-202ENST00000502850 KLKP1Q107X0 134 aa7.52□□□□□ -1.21
NUP54-202ENST00000502850 RYR3Q15413 4870 aa7.51□□□□□ -1.21
NUP54-202ENST00000502850 UBE2AP49459 152 aa7.51□□□□□ -1.21
NUP54-202ENST00000502850 PHF5AQ7RTV0 110 aaKnown RBP7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms