RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 LINC00959A0A1B0GUT2 108 aa5.71□□□□□ -1.5
HDAC3-212ENST00000492407 IGKV2-29A2NJV5 120 aaPredicted RBP5.71□□□□□ -1.5
HDAC3-212ENST00000492407 NDUFC1O43677 76 aa5.71□□□□□ -1.5
HDAC3-212ENST00000492407 SS18Q15532 418 aa5.71□□□□□ -1.5
HDAC3-212ENST00000492407 RPL39LQ96EH5 51 aaKnown RBP5.71□□□□□ -1.5
HDAC3-212ENST00000492407 A0A096LNI7 61 aa5.7□□□□□ -1.5
HDAC3-212ENST00000492407 IGKV2-24A0A0C4DH68 120 aa5.7□□□□□ -1.5
HDAC3-212ENST00000492407 PPP1R17O96001 155 aa5.7□□□□□ -1.5
HDAC3-212ENST00000492407 PSMB2P49721 201 aa5.7□□□□□ -1.5
HDAC3-212ENST00000492407 KRTAP10-8P60410 259 aa5.7□□□□□ -1.5
HDAC3-212ENST00000492407 Q6ZRP5 223 aa5.7□□□□□ -1.5
HDAC3-212ENST00000492407 LCA10Q71F78 164 aa5.7□□□□□ -1.5
HDAC3-212ENST00000492407 TOMM6Q96B49 74 aa5.7□□□□□ -1.5
HDAC3-212ENST00000492407 CDC42SE2Q9NRR3 84 aa5.7□□□□□ -1.5
HDAC3-212ENST00000492407 TP73-AS1Q9UF72 201 aa5.7□□□□□ -1.5
HDAC3-212ENST00000492407 SMIM27A0A1W2PRY6 76 aa5.69□□□□□ -1.5
HDAC3-212ENST00000492407 XCL1P47992 114 aa5.69□□□□□ -1.5
HDAC3-212ENST00000492407 POLR2KP53803 58 aaKnown RBP5.69□□□□□ -1.5
HDAC3-212ENST00000492407 HBBP68871 147 aa5.69□□□□□ -1.5
HDAC3-212ENST00000492407 SYCNQ0VAF6 134 aa5.69□□□□□ -1.5
HDAC3-212ENST00000492407 LRP2P98164 4655 aa5.69□□□□□ -1.5
HDAC3-212ENST00000492407 TNXBP22105 4242 aa5.69□□□□□ -1.5
HDAC3-212ENST00000492407 ZNF73O43830 326 aaPredicted RBP5.68□□□□□ -1.5
HDAC3-212ENST00000492407 TSHBP01222 138 aa5.68□□□□□ -1.5
HDAC3-212ENST00000492407 Q6ZVQ6 151 aa5.68□□□□□ -1.5
HDAC3-212ENST00000492407 V9GYV3 84 aa5.68□□□□□ -1.5
HDAC3-212ENST00000492407 TRBV10-2A0A0K0K1G8 114 aa5.67□□□□□ -1.5
HDAC3-212ENST00000492407 A0A1B0GUT8 65 aa5.67□□□□□ -1.5
HDAC3-212ENST00000492407 TIMM17BO60830 172 aa5.67□□□□□ -1.5
HDAC3-212ENST00000492407 IGLV4-69A0A075B6H9 119 aa5.66□□□□□ -1.5
HDAC3-212ENST00000492407 K7ERJ3 54 aa5.66□□□□□ -1.5
HDAC3-212ENST00000492407 PRYO14603 147 aa5.66□□□□□ -1.5
HDAC3-212ENST00000492407 UBE2D1P51668 147 aa5.66□□□□□ -1.5
HDAC3-212ENST00000492407 Q8N8P6 123 aa5.66□□□□□ -1.5
HDAC3-212ENST00000492407 URB1-AS1Q96HZ7 61 aa5.66□□□□□ -1.5
HDAC3-212ENST00000492407 A0A0B4J2C4 111 aa5.65□□□□□ -1.5
HDAC3-212ENST00000492407 HIGD1CA8MV81 97 aa5.65□□□□□ -1.5
HDAC3-212ENST00000492407 COX7A2LO14548 114 aa5.65□□□□□ -1.5
HDAC3-212ENST00000492407 CCKP06307 115 aa5.65□□□□□ -1.5
HDAC3-212ENST00000492407 RIGQ13278 110 aa5.65□□□□□ -1.5
HDAC3-212ENST00000492407 PAPPA-AS1Q5QFB9 102 aa5.65□□□□□ -1.5
HDAC3-212ENST00000492407 TIMM21Q9BVV7 248 aa5.65□□□□□ -1.5
HDAC3-212ENST00000492407 IGHV3OR16-9A0A0B4J2B5 98 aa5.64□□□□□ -1.51
HDAC3-212ENST00000492407 LST1O00453 97 aa5.64□□□□□ -1.51
HDAC3-212ENST00000492407 FCER1GP30273 86 aa5.64□□□□□ -1.51
HDAC3-212ENST00000492407 UBE2BP63146 152 aa5.64□□□□□ -1.51
HDAC3-212ENST00000492407 CXCL6P80162 114 aa5.64□□□□□ -1.51
HDAC3-212ENST00000492407 UBE2D4Q9Y2X8 147 aa5.64□□□□□ -1.51
HDAC3-212ENST00000492407 A8MUN3 132 aa5.63□□□□□ -1.51
HDAC3-212ENST00000492407 H0Y9J4 135 aa5.63□□□□□ -1.51
HDAC3-212ENST00000492407 GAS8-AS1O95177 125 aa5.63□□□□□ -1.51
HDAC3-212ENST00000492407 CKS2P33552 79 aa5.63□□□□□ -1.51
HDAC3-212ENST00000492407 SUMO2P61956 95 aaKnown RBP5.63□□□□□ -1.51
HDAC3-212ENST00000492407 ATXN8Q156A1 80 aa5.63□□□□□ -1.51
HDAC3-212ENST00000492407 Q75L30 129 aa5.63□□□□□ -1.51
HDAC3-212ENST00000492407 NOTCH2NLQ7Z3S9 236 aa5.63□□□□□ -1.51
HDAC3-212ENST00000492407 CAMK2N2Q96S95 79 aa5.63□□□□□ -1.51
HDAC3-212ENST00000492407 TMEM256-PLSCR3K7ERE1 68 aa5.62□□□□□ -1.51
HDAC3-212ENST00000492407 KIAA0087Q14695 138 aa5.62□□□□□ -1.51
HDAC3-212ENST00000492407 NRACQ8N912 160 aa5.62□□□□□ -1.51
HDAC3-212ENST00000492407 TIMM17AQ99595 171 aa5.62□□□□□ -1.51
HDAC3-212ENST00000492407 OPRPNQ99935 248 aaPredicted RBP5.62□□□□□ -1.51
HDAC3-212ENST00000492407 LOC107984156A0A0G2JMH3 177 aa5.61□□□□□ -1.51
HDAC3-212ENST00000492407 A0A1W2PNN7 141 aa5.61□□□□□ -1.51
HDAC3-212ENST00000492407 MP68P56378 58 aa5.61□□□□□ -1.51
HDAC3-212ENST00000492407 KLKP1Q107X0 134 aa5.61□□□□□ -1.51
HDAC3-212ENST00000492407 ARL17AQ8IVW1 177 aa5.61□□□□□ -1.51
HDAC3-212ENST00000492407 HIST1H4GQ99525 98 aa5.61□□□□□ -1.51
HDAC3-212ENST00000492407 CYSTM1Q9H1C7 97 aa5.61□□□□□ -1.51
HDAC3-212ENST00000492407 MRPL35Q9NZE8 188 aaKnown RBP5.61□□□□□ -1.51
HDAC3-212ENST00000492407 PSORS1C2Q9UIG4 136 aa5.61□□□□□ -1.51
HDAC3-212ENST00000492407 Q1T7F1 81 aa5.6□□□□□ -1.51
HDAC3-212ENST00000492407 C9orf116Q5BN46 136 aaPredicted RBP5.6□□□□□ -1.51
HDAC3-212ENST00000492407 DAND5Q8N907 189 aa5.6□□□□□ -1.51
HDAC3-212ENST00000492407 TRAV13-2A0A0B4J235 113 aa5.59□□□□□ -1.51
HDAC3-212ENST00000492407 LINC01549A6NIU2 74 aa5.59□□□□□ -1.51
HDAC3-212ENST00000492407 H7BZZ5 65 aa5.59□□□□□ -1.51
HDAC3-212ENST00000492407 TLX1NBP0CAT3 122 aa5.59□□□□□ -1.51
HDAC3-212ENST00000492407 IFI27P40305 119 aaPredicted RBP5.59□□□□□ -1.51
HDAC3-212ENST00000492407 SPAG11BQ08648 103 aa5.59□□□□□ -1.51
HDAC3-212ENST00000492407 LINC00173Q6ZV60 143 aa5.59□□□□□ -1.51
HDAC3-212ENST00000492407 FAM19A3Q7Z5A8 133 aa5.59□□□□□ -1.51
HDAC3-212ENST00000492407 DIRC1Q969H9 104 aa5.59□□□□□ -1.51
HDAC3-212ENST00000492407 NDUFA1O15239 70 aa5.58□□□□□ -1.52
HDAC3-212ENST00000492407 MRPL51Q4U2R6 128 aaKnown RBP5.58□□□□□ -1.52
HDAC3-212ENST00000492407 Q6JHZ5 121 aa5.58□□□□□ -1.52
HDAC3-212ENST00000492407 ATP11AUNQ6ZP68 121 aa5.58□□□□□ -1.52
HDAC3-212ENST00000492407 C7orf65Q6ZTY9 151 aa5.58□□□□□ -1.52
HDAC3-212ENST00000492407 NKAPP1Q8N9T2 125 aa5.58□□□□□ -1.52
HDAC3-212ENST00000492407 IGLV7-43P04211 117 aa5.57□□□□□ -1.52
HDAC3-212ENST00000492407 C1orf137Q5JT78 98 aa5.57□□□□□ -1.52
HDAC3-212ENST00000492407 IGLV1-50A0A075B6I6 118 aa5.56□□□□□ -1.52
HDAC3-212ENST00000492407 TEX49A0A1B0GTD5 131 aa5.56□□□□□ -1.52
HDAC3-212ENST00000492407 LOC389332A0A1B0GUA5 103 aa5.56□□□□□ -1.52
HDAC3-212ENST00000492407 TRIAP1O43715 76 aa5.56□□□□□ -1.52
HDAC3-212ENST00000492407 LINC00337Q8N6G1 96 aa5.56□□□□□ -1.52
HDAC3-212ENST00000492407 FAM104AQ969W3 186 aa5.56□□□□□ -1.52
HDAC3-212ENST00000492407 SMIM2Q9BVW6 85 aa5.56□□□□□ -1.52
HDAC3-212ENST00000492407 A0A087WZ39 114 aa5.55□□□□□ -1.52
HDAC3-212ENST00000492407 A0A087X002 238 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms