RNA–Protein interactions for RNA: ENST00000477334.1

RBM39-231, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 949 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-231	ENST00000477334	LINC00846	Q9NV44	126 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	CEP162	Q5TB80	1403 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	ERVK-7	P63135	1459 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	NRXN1	Q9ULB1	1477 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	MACF1	Q9UPN3	7388 aa	Known RBP	0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	UGGT1	Q9NYU2	1555 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	PAPPA	Q13219	1627 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	ITSN2	Q9NZM3	1697 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	MON2	Q7Z3U7	1717 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	BTAF1	O14981	1849 aa		0.77	□□□□□ -2.29
RBM39-231	ENST00000477334	CACNA1E	Q15878	2313 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	IQGAP1	P46940	1657 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	MROH2B	Q7Z745	1585 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	EFCAB5	A4FU69	1503 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	NEXMIF	Q5QGS0	1516 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	NLRP1	Q9C000	1473 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	ZNF469	Q96JG9	3925 aa	Predicted RBP	0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	BCE1	O60756	84 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	GNGT1	P63211	74 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	PEA15	Q15121	130 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	PIGY	Q3MUY2	71 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	CHD9	Q3L8U1	2897 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	CSPG4	Q6UVK1	2322 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	VPS13C	Q709C8	3753 aa		0.76	□□□□□ -2.29
RBM39-231	ENST00000477334	MYO3A	Q8NEV4	1616 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	EDC4	Q6P2E9	1401 aa	Known RBP	0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	ASXL3	Q9C0F0	2248 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	FXYD6-FXYD2	A0A087WZ82	144 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	C10orf142	B7Z368	130 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	ARMS2	P0C7Q2	107 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	HMGN3	Q15651	99 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	C9orf62	Q8N4C0	152 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	LCN9	Q8WX39	176 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	C20orf78	Q9BR46	151 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	TP53AIP1	Q9HCN2	124 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	MAP1A	P78559	2803 aa	Predicted RBP	0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	HIVEP1	P15822	2718 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	WNK3	Q9BYP7	1800 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	SON	P18583	2426 aa	Known RBP	0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	PKD1L3	Q7Z443	1732 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	NRXN3	Q9Y4C0	1643 aa		0.75	□□□□□ -2.29
RBM39-231	ENST00000477334	MAST1	Q9Y2H9	1570 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	ASXL1	Q8IXJ9	1541 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	FAT4	Q6V0I7	4981 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	PDCD11	Q14690	1871 aa	Known RBP	0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	TRBV7-4	A0A0J9YYF1	115 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334		F8WEM9	126 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334		H0Y9P7	68 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334		K7EP34	96 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	CYB5A	P00167	134 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	PYY3	Q5JQD4	70 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	DEFB107A	Q8IZN7	70 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	DEPDC5	O75140	1603 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	AKAP9	Q99996	3911 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	TIAM1	Q13009	1591 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	NEB	P20929	6669 aa		0.74	□□□□□ -2.29
RBM39-231	ENST00000477334	CCDC88B	A6NC98	1476 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	MAGI2	Q86UL8	1455 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	CENPE	Q02224	2701 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	SYNE2	Q8WXH0	6885 aa	Known RBP	0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	XRN1	Q8IZH2	1706 aa	Known RBP	0.73	□□□□□ -2.29
RBM39-231	ENST00000477334		D6R8Y8	96 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	LEPROTL1	O95214	131 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	SPINK6	Q6UWN8	80 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	C6orf201	Q7Z4U5	140 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	MUSTN1	Q8IVN3	82 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334		Q8IZM0	81 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	S100A16	Q96FQ6	103 aa	Known RBP	0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	AHCTF1	Q8WYP5	2266 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	TACC2	O95359	2948 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	CCDC18	Q5T9S5	1454 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	DMBT1	Q9UGM3	2413 aa	Predicted RBP	0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	RGPD3	A6NKT7	1758 aa	Predicted RBP	0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	RGPD4	Q7Z3J3	1758 aa		0.73	□□□□□ -2.29
RBM39-231	ENST00000477334	UACA	Q9BZF9	1416 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	KIAA1551	Q9HCM1	1747 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	RNF213	Q63HN8	5207 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	MROH1	Q8NDA8	1641 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	SAMD9	Q5K651	1589 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334		A0A1B0GU69	56 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	KRTAP20-1	Q3LI63	56 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	ABCC1	P33527	1531 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	ATP7A	Q04656	1500 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	UGGT2	Q9NYU1	1516 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	APC2	O95996	2303 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	STAB2	Q8WWQ8	2551 aa		0.72	□□□□□ -2.29
RBM39-231	ENST00000477334	ABCA6	Q8N139	1617 aa		0.71	□□□□□ -2.3
RBM39-231	ENST00000477334	PLIN4	Q96Q06	1357 aa		0.71	□□□□□ -2.3
RBM39-231	ENST00000477334	ABCC8	Q09428	1581 aa		0.71	□□□□□ -2.3
RBM39-231	ENST00000477334	SAMD9L	Q8IVG5	1584 aa		0.71	□□□□□ -2.3
RBM39-231	ENST00000477334	HMGN2	P05204	90 aa	Known RBP	0.71	□□□□□ -2.3
RBM39-231	ENST00000477334	ALKAL2	Q6UX46	152 aa		0.71	□□□□□ -2.3
RBM39-231	ENST00000477334	HIGD1B	Q9P298	99 aa		0.71	□□□□□ -2.3
RBM39-231	ENST00000477334		A0A0G2JMZ2	1700 aa		0.71	□□□□□ -2.3
RBM39-231	ENST00000477334	COL7A1	Q02388	2944 aa		0.71	□□□□□ -2.3
RBM39-231	ENST00000477334	ACAN	P16112	2415 aa		0.7	□□□□□ -2.3
RBM39-231	ENST00000477334	ADAMTS12	P58397	1594 aa		0.7	□□□□□ -2.3
RBM39-231	ENST00000477334	DNMBP	Q6XZF7	1577 aa		0.7	□□□□□ -2.3
RBM39-231	ENST00000477334	KNDC1	Q76NI1	1749 aa		0.7	□□□□□ -2.3
RBM39-231	ENST00000477334	FMN2	Q9NZ56	1722 aa		0.7	□□□□□ -2.3

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