RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PPDPFQ9H3Y8 114 aa4.08□□□□□ -1.76
VPS41-208ENST00000448833 NDUFA12Q9UI09 145 aa4.08□□□□□ -1.76
VPS41-208ENST00000448833 LOC107984156A0A0G2JMH3 177 aa4.07□□□□□ -1.76
VPS41-208ENST00000448833 TRBV10-2A0A0K0K1G8 114 aa4.07□□□□□ -1.76
VPS41-208ENST00000448833 LEPROTL1O95214 131 aa4.07□□□□□ -1.76
VPS41-208ENST00000448833 NMUP48645 174 aa4.07□□□□□ -1.76
VPS41-208ENST00000448833 HERVK_113P61574 105 aa4.07□□□□□ -1.76
VPS41-208ENST00000448833 JOSD1Q15040 202 aaPredicted RBP4.07□□□□□ -1.76
VPS41-208ENST00000448833 VAMP3Q15836 100 aa4.07□□□□□ -1.76
VPS41-208ENST00000448833 ARL17AQ8IVW1 177 aa4.07□□□□□ -1.76
VPS41-208ENST00000448833 SMCR5Q8TEV8 140 aa4.07□□□□□ -1.76
VPS41-208ENST00000448833 HSPB8Q9UJY1 196 aa4.07□□□□□ -1.76
VPS41-208ENST00000448833 KRTAP9-7A8MTY7 169 aa4.06□□□□□ -1.76
VPS41-208ENST00000448833 NCR3O14931 201 aa4.06□□□□□ -1.76
VPS41-208ENST00000448833 SSBP3-AS1Q7Z2R9 100 aa4.06□□□□□ -1.76
VPS41-208ENST00000448833 FAM19A2Q8N3H0 131 aa4.06□□□□□ -1.76
VPS41-208ENST00000448833 C3orf22Q8N5N4 141 aa4.06□□□□□ -1.76
VPS41-208ENST00000448833 Q8NDZ9 215 aa4.06□□□□□ -1.76
VPS41-208ENST00000448833 LEPROTO15243 131 aa4.05□□□□□ -1.76
VPS41-208ENST00000448833 NDUFC2O95298 119 aa4.05□□□□□ -1.76
VPS41-208ENST00000448833 DDTP30046 118 aa4.05□□□□□ -1.76
VPS41-208ENST00000448833 HINT1P49773 126 aaPredicted RBP4.05□□□□□ -1.76
VPS41-208ENST00000448833 RPS29P62273 56 aaKnown RBP4.05□□□□□ -1.76
VPS41-208ENST00000448833 LINC00483Q53H64 154 aa4.05□□□□□ -1.76
VPS41-208ENST00000448833 S100A7L2Q5SY68 101 aa4.05□□□□□ -1.76
VPS41-208ENST00000448833 Q8NBF4 154 aa4.05□□□□□ -1.76
VPS41-208ENST00000448833 SPANXB1Q9NS25 103 aaPredicted RBP4.05□□□□□ -1.76
VPS41-208ENST00000448833 TRBV10-3A0A0K0K1G6 114 aa4.04□□□□□ -1.76
VPS41-208ENST00000448833 COLCA2A8K830 154 aa4.04□□□□□ -1.76
VPS41-208ENST00000448833 KRTAP4-16G5E9R7 235 aaPredicted RBP4.04□□□□□ -1.76
VPS41-208ENST00000448833 J3QQQ9 107 aa4.04□□□□□ -1.76
VPS41-208ENST00000448833 DPM2O94777 84 aa4.04□□□□□ -1.76
VPS41-208ENST00000448833 LGALS3P17931 250 aaKnown RBP4.04□□□□□ -1.76
VPS41-208ENST00000448833 YPEL4Q96NS1 127 aa4.04□□□□□ -1.76
VPS41-208ENST00000448833 SLC25A20O43772 301 aa4.03□□□□□ -1.76
VPS41-208ENST00000448833 GAGE2AQ6NT46 116 aa4.03□□□□□ -1.76
VPS41-208ENST00000448833 Q6ZRX8 168 aa4.03□□□□□ -1.76
VPS41-208ENST00000448833 DAND5Q8N907 189 aa4.03□□□□□ -1.76
VPS41-208ENST00000448833 IGKCP01834 107 aa4.02□□□□□ -1.77
VPS41-208ENST00000448833 TRGC2P03986 189 aa4.02□□□□□ -1.77
VPS41-208ENST00000448833 SEC61GP60059 68 aa4.02□□□□□ -1.77
VPS41-208ENST00000448833 SEC61BP60468 96 aaKnown RBP4.02□□□□□ -1.77
VPS41-208ENST00000448833 SLC25A34Q6PIV7 304 aa4.02□□□□□ -1.77
VPS41-208ENST00000448833 TRAV23DV6A0A075B6W5 121 aa4.01□□□□□ -1.77
VPS41-208ENST00000448833 IGLV9-49A0A0B4J1Y8 123 aa4.01□□□□□ -1.77
VPS41-208ENST00000448833 KRTAP23-1A1A580 65 aa4.01□□□□□ -1.77
VPS41-208ENST00000448833 SERF1AO75920 110 aa4.01□□□□□ -1.77
VPS41-208ENST00000448833 IGLV6-57P01721 117 aa4.01□□□□□ -1.77
VPS41-208ENST00000448833 FABP4P15090 132 aa4.01□□□□□ -1.77
VPS41-208ENST00000448833 MOBPQ13875 183 aa4.01□□□□□ -1.77
VPS41-208ENST00000448833 KRTAP13-3Q3SY46 172 aa4.01□□□□□ -1.77
VPS41-208ENST00000448833 LINC00518Q8N0U6 118 aa4.01□□□□□ -1.77
VPS41-208ENST00000448833 FAT4Q6V0I7 4981 aa4□□□□□ -1.77
VPS41-208ENST00000448833 ASB16-AS1Q495Z4 193 aa4□□□□□ -1.77
VPS41-208ENST00000448833 C5orf47Q569G3 176 aa4□□□□□ -1.77
VPS41-208ENST00000448833 E9PLD3 99 aa3.99□□□□□ -1.77
VPS41-208ENST00000448833 ZNF73O43830 326 aaPredicted RBP3.99□□□□□ -1.77
VPS41-208ENST00000448833 S100A2P29034 98 aa3.99□□□□□ -1.77
VPS41-208ENST00000448833 TSPEAR-AS2P59090 65 aa3.99□□□□□ -1.77
VPS41-208ENST00000448833 Q8N377 158 aa3.99□□□□□ -1.77
VPS41-208ENST00000448833 Q9BRP9 147 aa3.99□□□□□ -1.77
VPS41-208ENST00000448833 DHRS4-AS1Q9P1J3 65 aa3.99□□□□□ -1.77
VPS41-208ENST00000448833 A0A0J9YXY3 114 aa3.98□□□□□ -1.77
VPS41-208ENST00000448833 TIMM17BO60830 172 aa3.98□□□□□ -1.77
VPS41-208ENST00000448833 ERC2-IT1O76042 136 aa3.98□□□□□ -1.77
VPS41-208ENST00000448833 LINC01547P58512 204 aaPredicted RBP3.98□□□□□ -1.77
VPS41-208ENST00000448833 C9orf153Q5TBE3 101 aa3.98□□□□□ -1.77
VPS41-208ENST00000448833 COPS9Q8WXC6 57 aa3.98□□□□□ -1.77
VPS41-208ENST00000448833 LIMD2Q9BT23 127 aa3.98□□□□□ -1.77
VPS41-208ENST00000448833 SPANXCQ9NY87 97 aa3.98□□□□□ -1.77
VPS41-208ENST00000448833 HIST1H2BKO60814 126 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 HIST1H2BJP06899 126 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 HIST1H2BOP23527 126 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 HIST1H2BBP33778 126 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 HIST1H2BDP58876 126 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 HIST1H2BCP62807 126 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 HIST2H2BEQ16778 126 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.97□□□□□ -1.77
VPS41-208ENST00000448833 OR13C6PQ8NH95 151 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 HIST1H2BHQ93079 126 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 HIST1H2BNQ99877 126 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 HIST1H2BMQ99879 126 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 PMCHL2Q9BQD1 86 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 KRTAP3-1Q9BYR8 98 aa3.97□□□□□ -1.77
VPS41-208ENST00000448833 SPANXDQ9BXN6 97 aa3.96□□□□□ -1.78
VPS41-208ENST00000448833 KRTAP9-3Q9BYQ3 159 aa3.96□□□□□ -1.78
VPS41-208ENST00000448833 LAMTOR3Q9UHA4 124 aa3.96□□□□□ -1.78
VPS41-208ENST00000448833 SYS1-DBNDD2H3BUS1 97 aa3.95□□□□□ -1.78
VPS41-208ENST00000448833 SPRR1BP22528 89 aa3.95□□□□□ -1.78
VPS41-208ENST00000448833 AKR1D1P51857 326 aa3.95□□□□□ -1.78
VPS41-208ENST00000448833 NPC2P61916 151 aa3.95□□□□□ -1.78
VPS41-208ENST00000448833 SNRPEP62304 92 aaKnown RBP3.95□□□□□ -1.78
VPS41-208ENST00000448833 ADAMTSL4-AS1Q5T5F5 129 aa3.95□□□□□ -1.78
VPS41-208ENST00000448833 LINC00308Q8TCZ7 52 aa3.95□□□□□ -1.78
VPS41-208ENST00000448833 MUC17Q685J3 4493 aa3.94□□□□□ -1.78
VPS41-208ENST00000448833 TRBV7-6A0A0J9YX20 115 aa3.94□□□□□ -1.78
VPS41-208ENST00000448833 ZNF815PA8K554 130 aa3.94□□□□□ -1.78
VPS41-208ENST00000448833 CD164Q04900 197 aa3.94□□□□□ -1.78
VPS41-208ENST00000448833 TAL2Q16559 108 aa3.94□□□□□ -1.78
VPS41-208ENST00000448833 SOSTDC1Q6X4U4 206 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms