RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 COX7A2LO14548 114 aa3.08□□□□□ -1.92
SF3B1-202ENST00000409915 HTN1P15515 57 aa3.08□□□□□ -1.92
SF3B1-202ENST00000409915 LGALS3P17931 250 aaKnown RBP3.08□□□□□ -1.92
SF3B1-202ENST00000409915 TSPEAR-AS2P59090 65 aa3.08□□□□□ -1.92
SF3B1-202ENST00000409915 PRR9Q5T870 116 aa3.08□□□□□ -1.92
SF3B1-202ENST00000409915 PHF5AQ7RTV0 110 aaKnown RBP3.08□□□□□ -1.92
SF3B1-202ENST00000409915 C14orf178Q8N769 122 aaPredicted RBP3.08□□□□□ -1.92
SF3B1-202ENST00000409915 TMEM141Q96I45 108 aa3.08□□□□□ -1.92
SF3B1-202ENST00000409915 SCGB3A1Q96QR1 104 aa3.08□□□□□ -1.92
SF3B1-202ENST00000409915 LINC00474Q9P2X8 69 aa3.08□□□□□ -1.92
SF3B1-202ENST00000409915 TRAV12-3A0A0B4J271 114 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 A8MUN3 132 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 C3orf84H3BNL1 204 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 SH2D1AO60880 128 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 MIFP14174 115 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 Q1RN00 199 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 Q6ZTC4 211 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 C20orf197Q8N268 126 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 Q8N377 158 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 LINC00588Q9Y4M8 146 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 NACAE9PAV3 2078 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 VPS13DQ5THJ4 4388 aa3.07□□□□□ -1.92
SF3B1-202ENST00000409915 GAS8-AS1O95177 125 aa3.06□□□□□ -1.92
SF3B1-202ENST00000409915 PPP1R17O96001 155 aa3.06□□□□□ -1.92
SF3B1-202ENST00000409915 BAALC-AS2P0C853 105 aa3.06□□□□□ -1.92
SF3B1-202ENST00000409915 HTN3P15516 51 aa3.06□□□□□ -1.92
SF3B1-202ENST00000409915 RNASE4P34096 147 aaKnown RBP3.06□□□□□ -1.92
SF3B1-202ENST00000409915 SS18Q15532 418 aa3.06□□□□□ -1.92
SF3B1-202ENST00000409915 ESRGQ1W209 222 aa3.06□□□□□ -1.92
SF3B1-202ENST00000409915 ZFAND2AQ8N6M9 145 aa3.06□□□□□ -1.92
SF3B1-202ENST00000409915 C20orf203Q8NBC4 194 aa3.06□□□□□ -1.92
SF3B1-202ENST00000409915 M0R378 163 aa3.05□□□□□ -1.92
SF3B1-202ENST00000409915 DEFB130BP0DP73 79 aa3.05□□□□□ -1.92
SF3B1-202ENST00000409915 DEFB130AP0DP74 79 aa3.05□□□□□ -1.92
SF3B1-202ENST00000409915 RPL28P46779 137 aaKnown RBP3.05□□□□□ -1.92
SF3B1-202ENST00000409915 UBE2AP49459 152 aa3.05□□□□□ -1.92
SF3B1-202ENST00000409915 RBM3P98179 157 aaKnown RBP3.05□□□□□ -1.92
SF3B1-202ENST00000409915 MIAQ16674 131 aa3.05□□□□□ -1.92
SF3B1-202ENST00000409915 CLEC2BQ92478 149 aa3.05□□□□□ -1.92
SF3B1-202ENST00000409915 LINC00846Q9NV44 126 aa3.05□□□□□ -1.92
SF3B1-202ENST00000409915 DNAH6Q9C0G6 4158 aa3.05□□□□□ -1.92
SF3B1-202ENST00000409915 KMT2AQ03164 3969 aa3.04□□□□□ -1.92
SF3B1-202ENST00000409915 NUPR2A6NF83 97 aa3.04□□□□□ -1.92
SF3B1-202ENST00000409915 F8WEM9 126 aa3.04□□□□□ -1.92
SF3B1-202ENST00000409915 SPART-AS1P0CW21 52 aa3.04□□□□□ -1.92
SF3B1-202ENST00000409915 C16orf74Q96GX8 76 aa3.04□□□□□ -1.92
SF3B1-202ENST00000409915 NOP10Q9NPE3 64 aaKnown RBP3.04□□□□□ -1.92
SF3B1-202ENST00000409915 IGLV1-50A0A075B6I6 118 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 A0A087WVE0 104 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 DEFB131BA0A096LNP1 70 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 TRAV10A0A0B4J240 114 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 IGKV3D-7A0A0C4DH55 119 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 TRBV7-4A0A0J9YYF1 115 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 LCE6AA0A183 80 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 H7C2G1 150 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 DNAL4O96015 105 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 Q6ZTI0 123 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 C8orf17Q9NRJ1 99 aa3.03□□□□□ -1.92
SF3B1-202ENST00000409915 EPPK1P58107 5090 aaKnown RBP3.03□□□□□ -1.92
SF3B1-202ENST00000409915 DNAH10Q8IVF4 4471 aa3.03□□□□□ -1.93
SF3B1-202ENST00000409915 TRGV1A0A0A0MS02 117 aa3.02□□□□□ -1.93
SF3B1-202ENST00000409915 GNRH2O43555 120 aa3.02□□□□□ -1.93
SF3B1-202ENST00000409915 LY6G6CO95867 125 aa3.02□□□□□ -1.93
SF3B1-202ENST00000409915 IGHV3-53P01767 116 aa3.02□□□□□ -1.93
SF3B1-202ENST00000409915 UBE2BP63146 152 aa3.02□□□□□ -1.93
SF3B1-202ENST00000409915 FAM229BQ4G0N7 80 aa3.02□□□□□ -1.93
SF3B1-202ENST00000409915 SCXQ7RTU7 201 aa3.02□□□□□ -1.93
SF3B1-202ENST00000409915 APLNQ9ULZ1 77 aa3.02□□□□□ -1.93
SF3B1-202ENST00000409915 LENEPQ9Y5L5 61 aa3.02□□□□□ -1.93
SF3B1-202ENST00000409915 BIRC6Q9NR09 4857 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 TRGV2A0A075B6R0 118 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 TRAV21A0A0B4J279 112 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 TRBV6-5A0A0K0K1A5 114 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 hDV103S1A0JD37 113 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 UBE2L6O14933 153 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 POLR2KP53803 58 aaKnown RBP3.01□□□□□ -1.93
SF3B1-202ENST00000409915 CIRBPQ14011 172 aaKnown RBP3.01□□□□□ -1.93
SF3B1-202ENST00000409915 RNASE13Q5GAN3 156 aaKnown RBP3.01□□□□□ -1.93
SF3B1-202ENST00000409915 ATP11AUNQ6ZP68 121 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 LCA10Q71F78 164 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 LINC00612Q8N6U2 182 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 LINC00167Q96N53 147 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 OPRPNQ99935 248 aaPredicted RBP3.01□□□□□ -1.93
SF3B1-202ENST00000409915 LINC00467Q9BRT7 94 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 FRAS1Q86XX4 4008 aa3.01□□□□□ -1.93
SF3B1-202ENST00000409915 DNAH2Q9P225 4427 aa3□□□□□ -1.93
SF3B1-202ENST00000409915 IGKV3D-20A0A0C4DH25 116 aa3□□□□□ -1.93
SF3B1-202ENST00000409915 A6NN06 94 aa3□□□□□ -1.93
SF3B1-202ENST00000409915 ZNF73O43830 326 aaPredicted RBP3□□□□□ -1.93
SF3B1-202ENST00000409915 RNASE3P12724 160 aaKnown RBP3□□□□□ -1.93
SF3B1-202ENST00000409915 LUZP6Q538Z0 58 aa3□□□□□ -1.93
SF3B1-202ENST00000409915 DIRC1Q969H9 104 aa3□□□□□ -1.93
SF3B1-202ENST00000409915 RMI2Q96E14 147 aa3□□□□□ -1.93
SF3B1-202ENST00000409915 PHLDA3Q9Y5J5 127 aa3□□□□□ -1.93
SF3B1-202ENST00000409915 TRAV23DV6A0A075B6W5 121 aa2.99□□□□□ -1.93
SF3B1-202ENST00000409915 IGHV3-73A0A0B4J1V6 119 aa2.99□□□□□ -1.93
SF3B1-202ENST00000409915 H0YGX0 51 aa2.99□□□□□ -1.93
SF3B1-202ENST00000409915 UBE2DNLQ8IWF7 75 aa2.99□□□□□ -1.93
SF3B1-202ENST00000409915 DNAH17Q9UFH2 4485 aa2.99□□□□□ -1.93
SF3B1-202ENST00000409915 A0A096LPF7 62 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms