RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FBN3Q75N90 2809 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 PCDH15Q96QU1 1955 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 PI4KAP42356 2102 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 IGKV3D-7A0A0C4DH55 119 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 IGKV3OR2-268A0A0C4DH90 116 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 TRBV30A0A0K0K1B3 111 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 M0R135 149 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 UQCR11O14957 56 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 HMGA1P17096 107 aaKnown RBP2.14□□□□□ -2.07
HMGB1-204ENST00000399489 KRTAP21-3Q3LHN1 58 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 ADGRG4Q8IZF6 3080 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 CMC2Q9NRP2 79 aa2.14□□□□□ -2.07
HMGB1-204ENST00000399489 TLN1Q9Y490 2541 aaKnown RBP2.13□□□□□ -2.07
HMGB1-204ENST00000399489 POLQO75417 2590 aa2.13□□□□□ -2.07
HMGB1-204ENST00000399489 ITPR2Q14571 2701 aa2.13□□□□□ -2.07
HMGB1-204ENST00000399489 CTXND1A0A1B0GTU2 59 aa2.13□□□□□ -2.07
HMGB1-204ENST00000399489 NDUFB1O75438 58 aa2.13□□□□□ -2.07
HMGB1-204ENST00000399489 MGPP08493 103 aa2.13□□□□□ -2.07
HMGB1-204ENST00000399489 WFDC10AQ9H1F0 79 aa2.13□□□□□ -2.07
HMGB1-204ENST00000399489 V9GYV3 84 aa2.13□□□□□ -2.07
HMGB1-204ENST00000399489 MTORP42345 2549 aa2.13□□□□□ -2.07
HMGB1-204ENST00000399489 NAV3Q8IVL0 2385 aa2.13□□□□□ -2.07
HMGB1-204ENST00000399489 GOLGA4Q13439 2230 aaKnown RBP2.13□□□□□ -2.07
HMGB1-204ENST00000399489 SPTBP11277 2137 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 OTOGQ6ZRI0 2925 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 NBASA2RRP1 2371 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 SPTBN1Q01082 2364 aaKnown RBP2.12□□□□□ -2.07
HMGB1-204ENST00000399489 IGKV2-24A0A0C4DH68 120 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 H3BRN7 92 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 FCER1GP30273 86 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 LINC00846Q9NV44 126 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 KLK9Q9UKQ9 250 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 ESPL1Q14674 2120 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 SETD2Q9BYW2 2564 aaPredicted RBP2.12□□□□□ -2.07
HMGB1-204ENST00000399489 NF1P21359 2839 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 MYO7BQ6PIF6 2116 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 AKAP9Q99996 3911 aa2.12□□□□□ -2.07
HMGB1-204ENST00000399489 LRBAP50851 2863 aa2.11□□□□□ -2.07
HMGB1-204ENST00000399489 ABCA2Q9BZC7 2435 aa2.11□□□□□ -2.07
HMGB1-204ENST00000399489 RNASE3P12724 160 aaKnown RBP2.11□□□□□ -2.07
HMGB1-204ENST00000399489 IGFL1Q6UW32 110 aa2.11□□□□□ -2.07
HMGB1-204ENST00000399489 SHROOM3Q8TF72 1996 aa2.11□□□□□ -2.07
HMGB1-204ENST00000399489 F8P00451 2351 aa2.11□□□□□ -2.07
HMGB1-204ENST00000399489 SPG11Q96JI7 2443 aa2.11□□□□□ -2.07
HMGB1-204ENST00000399489 CELSR1Q9NYQ6 3014 aa2.11□□□□□ -2.07
HMGB1-204ENST00000399489 KNL1Q8NG31 2342 aa2.11□□□□□ -2.07
HMGB1-204ENST00000399489 PCNX1Q96RV3 2341 aa2.11□□□□□ -2.07
HMGB1-204ENST00000399489 DEFB119Q8N690 84 aa2.11□□□□□ -2.07
HMGB1-204ENST00000399489 TNRC6BQ9UPQ9 1833 aaKnown RBP2.1□□□□□ -2.07
HMGB1-204ENST00000399489 ICE1Q9Y2F5 2266 aa2.1□□□□□ -2.07
HMGB1-204ENST00000399489 IGKV2-40A0A087WW87 121 aaPredicted RBP2.1□□□□□ -2.07
HMGB1-204ENST00000399489 TRGV4A0A0C4DH28 118 aa2.1□□□□□ -2.07
HMGB1-204ENST00000399489 H0Y9P7 68 aa2.1□□□□□ -2.07
HMGB1-204ENST00000399489 IGKV2D-40P01614 121 aaPredicted RBP2.1□□□□□ -2.07
HMGB1-204ENST00000399489 NREPQ16612 68 aa2.1□□□□□ -2.07
HMGB1-204ENST00000399489 HCP5Q6MZN7 132 aa2.1□□□□□ -2.07
HMGB1-204ENST00000399489 PLAC8Q9NZF1 115 aa2.1□□□□□ -2.07
HMGB1-204ENST00000399489 ABRACLQ9P1F3 81 aa2.1□□□□□ -2.07
HMGB1-204ENST00000399489 MDC1Q14676 2089 aaKnown RBP2.1□□□□□ -2.07
HMGB1-204ENST00000399489 MED12Q93074 2177 aa2.1□□□□□ -2.07
HMGB1-204ENST00000399489 CR1P17927 2039 aa2.09□□□□□ -2.07
HMGB1-204ENST00000399489 CELSR2Q9HCU4 2923 aa2.09□□□□□ -2.07
HMGB1-204ENST00000399489 UNC13CQ8NB66 2214 aa2.09□□□□□ -2.07
HMGB1-204ENST00000399489 ZNF137PP52743 207 aa2.09□□□□□ -2.07
HMGB1-204ENST00000399489 RPL37AP61513 92 aaKnown RBP2.09□□□□□ -2.07
HMGB1-204ENST00000399489 C10orf55Q5SWW7 151 aa2.09□□□□□ -2.07
HMGB1-204ENST00000399489 LINC00304Q8N9R0 145 aa2.09□□□□□ -2.07
HMGB1-204ENST00000399489 TMEM263Q8WUH6 116 aaKnown RBP2.09□□□□□ -2.07
HMGB1-204ENST00000399489 LINC00208Q96KT6 92 aa2.09□□□□□ -2.07
HMGB1-204ENST00000399489 ZNF469Q96JG9 3925 aaPredicted RBP2.09□□□□□ -2.07
HMGB1-204ENST00000399489 UTP20O75691 2785 aaKnown RBP2.09□□□□□ -2.08
HMGB1-204ENST00000399489 TRAV21A0A0B4J279 112 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 NBDYA0A0U1RRE5 68 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 CRYBG3Q68DQ2 2970 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 PP632Q6XCG6 107 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 WFDC6Q9BQY6 131 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 TXNDC17Q9BRA2 123 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 TMEM14CQ9P0S9 112 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 HIVEP1P15822 2718 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 CENPEQ02224 2701 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 A0A087WTM6 91 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 IGKV2-29A2NJV5 120 aaPredicted RBP2.08□□□□□ -2.08
HMGB1-204ENST00000399489 IGLV3-19P01714 112 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 FXYD3Q14802 87 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 SPRR4Q96PI1 79 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 ANKRD36A6QL64 1941 aa2.08□□□□□ -2.08
HMGB1-204ENST00000399489 PDZD2O15018 2839 aa2.07□□□□□ -2.08
HMGB1-204ENST00000399489 J3QRE1 110 aa2.07□□□□□ -2.08
HMGB1-204ENST00000399489 COX17Q14061 63 aa2.07□□□□□ -2.08
HMGB1-204ENST00000399489 WFDC9Q8NEX5 89 aa2.07□□□□□ -2.08
HMGB1-204ENST00000399489 UBL5Q9BZL1 73 aa2.07□□□□□ -2.08
HMGB1-204ENST00000399489 RTTNQ86VV8 2226 aa2.06□□□□□ -2.08
HMGB1-204ENST00000399489 ARFGEF3Q5TH69 2177 aa2.06□□□□□ -2.08
HMGB1-204ENST00000399489 SPINK7P58062 85 aa2.06□□□□□ -2.08
HMGB1-204ENST00000399489 C10orf113Q5VZT2 155 aa2.06□□□□□ -2.08
HMGB1-204ENST00000399489 ENHOQ6UWT2 76 aa2.06□□□□□ -2.08
HMGB1-204ENST00000399489 CCDC168Q8NDH2 2452 aa2.06□□□□□ -2.08
HMGB1-204ENST00000399489 HIVEP3Q5T1R4 2406 aa2.06□□□□□ -2.08
HMGB1-204ENST00000399489 TRAV1-2A0A0B4J238 106 aa2.05□□□□□ -2.08
HMGB1-204ENST00000399489 TRBV6-1A0A0K0K1D8 114 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms