RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 CRIPTQ9P021 101 aa6.74□□□□□ -1.33
PTCH1-204ENST00000375290 IGLV7-46A0A075B6I9 117 aa6.74□□□□□ -1.33
PTCH1-204ENST00000375290 CNBPP62633 177 aaKnown RBP6.73□□□□□ -1.33
PTCH1-204ENST00000375290 EIF4EBP3O60516 100 aaPredicted RBP6.71□□□□□ -1.34
PTCH1-204ENST00000375290 NBDYA0A0U1RRE5 68 aa6.71□□□□□ -1.34
PTCH1-204ENST00000375290 SPINT4Q6UDR6 99 aa6.7□□□□□ -1.34
PTCH1-204ENST00000375290 LY6G6CO95867 125 aa6.7□□□□□ -1.34
PTCH1-204ENST00000375290 SPTBN4Q9H254 2564 aa6.7□□□□□ -1.34
PTCH1-204ENST00000375290 LINC00588Q9Y4M8 146 aa6.69□□□□□ -1.34
PTCH1-204ENST00000375290 Q5XG85 94 aa6.68□□□□□ -1.34
PTCH1-204ENST00000375290 PRRC2CQ9Y520 2896 aaKnown RBP6.68□□□□□ -1.34
PTCH1-204ENST00000375290 ZNF861PO60384 105 aa6.67□□□□□ -1.34
PTCH1-204ENST00000375290 M0R2N4 97 aa6.67□□□□□ -1.34
PTCH1-204ENST00000375290 C9orf129Q5T035 196 aaKnown RBP6.65□□□□□ -1.34
PTCH1-204ENST00000375290 LINC01558Q9Y6Z2 57 aa6.65□□□□□ -1.35
PTCH1-204ENST00000375290 RTL8CO15255 209 aa6.64□□□□□ -1.35
PTCH1-204ENST00000375290 PHF5AQ7RTV0 110 aaKnown RBP6.64□□□□□ -1.35
PTCH1-204ENST00000375290 CENPFP49454 3210 aa6.64□□□□□ -1.35
PTCH1-204ENST00000375290 C9orf163Q8N9P6 203 aa6.63□□□□□ -1.35
PTCH1-204ENST00000375290 SPACA4Q8TDM5 124 aa6.63□□□□□ -1.35
PTCH1-204ENST00000375290 ZNF575Q86XF7 245 aa6.63□□□□□ -1.35
PTCH1-204ENST00000375290 A0A1W2PNM2 257 aa6.63□□□□□ -1.35
PTCH1-204ENST00000375290 TYMSOSQ8TAI1 123 aa6.63□□□□□ -1.35
PTCH1-204ENST00000375290 C19orf73Q9NVV2 129 aa6.62□□□□□ -1.35
PTCH1-204ENST00000375290 GIG44P09565 113 aaPredicted RBP6.61□□□□□ -1.35
PTCH1-204ENST00000375290 KRTAP10-9P60411 292 aa6.61□□□□□ -1.35
PTCH1-204ENST00000375290 POLQO75417 2590 aa6.61□□□□□ -1.35
PTCH1-204ENST00000375290 IGLV8-61A0A075B6I0 122 aa6.61□□□□□ -1.35
PTCH1-204ENST00000375290 LINC01554Q52M75 96 aa6.6□□□□□ -1.35
PTCH1-204ENST00000375290 Q8N9P0 234 aaPredicted RBP6.6□□□□□ -1.35
PTCH1-204ENST00000375290 DSCR10P59022 87 aa6.59□□□□□ -1.35
PTCH1-204ENST00000375290 FLG2Q5D862 2391 aaPredicted RBP6.59□□□□□ -1.35
PTCH1-204ENST00000375290 Q96NJ1 140 aa6.59□□□□□ -1.35
PTCH1-204ENST00000375290 RBM12B-AS1Q9P1G2 102 aa6.59□□□□□ -1.36
PTCH1-204ENST00000375290 A0A087X002 238 aa6.58□□□□□ -1.36
PTCH1-204ENST00000375290 FP248Q71RG6 208 aaPredicted RBP6.58□□□□□ -1.36
PTCH1-204ENST00000375290 SPRR1AP35321 89 aa6.56□□□□□ -1.36
PTCH1-204ENST00000375290 A0A096LNT2 108 aa6.56□□□□□ -1.36
PTCH1-204ENST00000375290 DMAC1Q96GE9 116 aa6.56□□□□□ -1.36
PTCH1-204ENST00000375290 FAM168BA1KXE4 195 aa6.56□□□□□ -1.36
PTCH1-204ENST00000375290 TNP2Q05952 138 aa6.56□□□□□ -1.36
PTCH1-204ENST00000375290 CR1P17927 2039 aa6.55□□□□□ -1.36
PTCH1-204ENST00000375290 SPRR1BP22528 89 aa6.54□□□□□ -1.36
PTCH1-204ENST00000375290 SRCAPQ6ZRS2 3230 aa6.52□□□□□ -1.37
PTCH1-204ENST00000375290 FAM229BQ4G0N7 80 aa6.52□□□□□ -1.37
PTCH1-204ENST00000375290 LUZP6Q538Z0 58 aa6.52□□□□□ -1.37
PTCH1-204ENST00000375290 PLA2G1BP04054 148 aaKnown RBP6.51□□□□□ -1.37
PTCH1-204ENST00000375290 LINC00304Q8N9R0 145 aa6.51□□□□□ -1.37
PTCH1-204ENST00000375290 SMR3AQ99954 134 aa6.5□□□□□ -1.37
PTCH1-204ENST00000375290 Q5VV11 94 aa6.5□□□□□ -1.37
PTCH1-204ENST00000375290 IGLV7-43P04211 117 aa6.49□□□□□ -1.37
PTCH1-204ENST00000375290 CHTF8P0CG12 524 aa6.45□□□□□ -1.38
PTCH1-204ENST00000375290 LINC00472Q9H8W2 130 aa6.44□□□□□ -1.38
PTCH1-204ENST00000375290 A0A1B0GU33 70 aa6.44□□□□□ -1.38
PTCH1-204ENST00000375290 MMP24-AS1A0A0U1RRL7 71 aa6.44□□□□□ -1.38
PTCH1-204ENST00000375290 USP24Q9UPU5 2620 aa6.44□□□□□ -1.38
PTCH1-204ENST00000375290 A0A087WTM6 91 aa6.44□□□□□ -1.38
PTCH1-204ENST00000375290 BPTFQ12830 3046 aa6.43□□□□□ -1.38
PTCH1-204ENST00000375290 Q6ZR54 194 aa6.42□□□□□ -1.38
PTCH1-204ENST00000375290 PSORS1C2Q9UIG4 136 aa6.41□□□□□ -1.38
PTCH1-204ENST00000375290 EPG5Q9HCE0 2579 aa6.41□□□□□ -1.38
PTCH1-204ENST00000375290 APLNQ9ULZ1 77 aa6.4□□□□□ -1.38
PTCH1-204ENST00000375290 FLNAP21333 2647 aaKnown RBP6.4□□□□□ -1.39
PTCH1-204ENST00000375290 WWC2-AS2Q96NR7 200 aa6.39□□□□□ -1.39
PTCH1-204ENST00000375290 HRES1P13985 223 aa6.39□□□□□ -1.39
PTCH1-204ENST00000375290 LCE6AA0A183 80 aa6.39□□□□□ -1.39
PTCH1-204ENST00000375290 FASNP49327 2511 aaKnown RBP6.38□□□□□ -1.39
PTCH1-204ENST00000375290 CYSTM1Q9H1C7 97 aa6.37□□□□□ -1.39
PTCH1-204ENST00000375290 A0A0A0MQY5 61 aa6.37□□□□□ -1.39
PTCH1-204ENST00000375290 ZCCHC13Q8WW36 166 aaKnown RBP6.37□□□□□ -1.39
PTCH1-204ENST00000375290 PRR26Q8N8Z3 221 aa6.36□□□□□ -1.39
PTCH1-204ENST00000375290 LINC00483Q53H64 154 aa6.36□□□□□ -1.39
PTCH1-204ENST00000375290 A0A1W2PNN7 141 aa6.36□□□□□ -1.39
PTCH1-204ENST00000375290 KRTAP24-1Q3LI83 254 aa6.35□□□□□ -1.39
PTCH1-204ENST00000375290 OXTP01178 125 aa6.32□□□□□ -1.4
PTCH1-204ENST00000375290 PLAC8Q9NZF1 115 aa6.32□□□□□ -1.4
PTCH1-204ENST00000375290 KRTAP10-11P60412 298 aa6.31□□□□□ -1.4
PTCH1-204ENST00000375290 H3BS24 57 aa6.3□□□□□ -1.4
PTCH1-204ENST00000375290 K7EIL1 84 aa6.3□□□□□ -1.4
PTCH1-204ENST00000375290 COX6B2Q6YFQ2 88 aa6.29□□□□□ -1.4
PTCH1-204ENST00000375290 SPATA8Q6RVD6 105 aa6.28□□□□□ -1.4
PTCH1-204ENST00000375290 KRTAP29-1A8MX34 341 aaPredicted RBP6.28□□□□□ -1.4
PTCH1-204ENST00000375290 ITPR3Q14573 2671 aa6.27□□□□□ -1.41
PTCH1-204ENST00000375290 KRTAP4-16G5E9R7 235 aaPredicted RBP6.27□□□□□ -1.41
PTCH1-204ENST00000375290 ATRQ13535 2644 aa6.26□□□□□ -1.41
PTCH1-204ENST00000375290 Q5W150 140 aa6.26□□□□□ -1.41
PTCH1-204ENST00000375290 DNAH12Q6ZR08 3092 aa6.26□□□□□ -1.41
PTCH1-204ENST00000375290 ROMO1P60602 79 aa6.25□□□□□ -1.41
PTCH1-204ENST00000375290 RPL37P61927 97 aaKnown RBP6.24□□□□□ -1.41
PTCH1-204ENST00000375290 TRANK1O15050 2925 aa6.22□□□□□ -1.41
PTCH1-204ENST00000375290 Q8N1X5 172 aa6.22□□□□□ -1.41
PTCH1-204ENST00000375290 SPINK7P58062 85 aa6.22□□□□□ -1.41
PTCH1-204ENST00000375290 RPS29P62273 56 aaKnown RBP6.22□□□□□ -1.41
PTCH1-204ENST00000375290 CSAG1Q6PB30 78 aa6.22□□□□□ -1.41
PTCH1-204ENST00000375290 NBEAL1Q6ZS30 2694 aa6.22□□□□□ -1.41
PTCH1-204ENST00000375290 KRTAP1-3Q8IUG1 177 aa6.21□□□□□ -1.41
PTCH1-204ENST00000375290 GCN1Q92616 2671 aaKnown RBP6.21□□□□□ -1.41
PTCH1-204ENST00000375290 Q8NDZ9 215 aa6.21□□□□□ -1.41
PTCH1-204ENST00000375290 A6NN06 94 aa6.21□□□□□ -1.42
PTCH1-204ENST00000375290 KRTAP26-1Q6PEX3 210 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms