RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 TMEM254Q8TBM7 123 aa2.65□□□□□ -1.99
USH2A-202ENST00000366942 A8MWP4 228 aa2.64□□□□□ -1.99
USH2A-202ENST00000366942 TRBV7-4A0A0J9YYF1 115 aa2.64□□□□□ -1.99
USH2A-202ENST00000366942 H7BZZ5 65 aa2.64□□□□□ -1.99
USH2A-202ENST00000366942 CNFNQ9BYD5 112 aa2.64□□□□□ -1.99
USH2A-202ENST00000366942 A0A1B0GV90 55 aa2.64□□□□□ -1.99
USH2A-202ENST00000366942 A0A1W2PPM0 123 aa2.64□□□□□ -1.99
USH2A-202ENST00000366942 SPTBN5Q9NRC6 3674 aaKnown RBP2.64□□□□□ -1.99
USH2A-202ENST00000366942 NBEAL1Q6ZS30 2694 aa2.64□□□□□ -1.99
USH2A-202ENST00000366942 LINC00694P0DN24 101 aa2.63□□□□□ -1.99
USH2A-202ENST00000366942 CEP192Q8TEP8 1941 aa2.63□□□□□ -1.99
USH2A-202ENST00000366942 TRAV7A0A075B6U4 112 aa2.63□□□□□ -1.99
USH2A-202ENST00000366942 SPINT4Q6UDR6 99 aa2.63□□□□□ -1.99
USH2A-202ENST00000366942 PRR34Q9NV39 138 aa2.63□□□□□ -1.99
USH2A-202ENST00000366942 PRUNE2Q8WUY3 3088 aa2.63□□□□□ -1.99
USH2A-202ENST00000366942 LINC01546A6NGU7 62 aa2.62□□□□□ -1.99
USH2A-202ENST00000366942 DSCR10P59022 87 aa2.62□□□□□ -1.99
USH2A-202ENST00000366942 KRTAP10-3P60369 221 aa2.62□□□□□ -1.99
USH2A-202ENST00000366942 A0A1B0GVX0 72 aa2.62□□□□□ -1.99
USH2A-202ENST00000366942 ELOF1P60002 83 aaKnown RBP2.62□□□□□ -1.99
USH2A-202ENST00000366942 LCA10Q71F78 164 aa2.62□□□□□ -1.99
USH2A-202ENST00000366942 MUC3AQ02505 3323 aa2.62□□□□□ -1.99
USH2A-202ENST00000366942 H3BS24 57 aa2.62□□□□□ -1.99
USH2A-202ENST00000366942 LUZP6Q538Z0 58 aa2.62□□□□□ -1.99
USH2A-202ENST00000366942 FAM218AQ96MZ4 157 aa2.62□□□□□ -1.99
USH2A-202ENST00000366942 ARHGAP32A7KAX9 2087 aa2.61□□□□□ -1.99
USH2A-202ENST00000366942 KCNQ1DNQ9H478 68 aa2.61□□□□□ -1.99
USH2A-202ENST00000366942 TRANK1O15050 2925 aa2.61□□□□□ -1.99
USH2A-202ENST00000366942 SNURFQ9Y675 71 aa2.6□□□□□ -1.99
USH2A-202ENST00000366942 GCN1Q92616 2671 aaKnown RBP2.6□□□□□ -1.99
USH2A-202ENST00000366942 COX8CQ7Z4L0 72 aa2.6□□□□□ -1.99
USH2A-202ENST00000366942 MPLKIPQ8TAP9 179 aa2.6□□□□□ -1.99
USH2A-202ENST00000366942 C11orf21Q9P2W6 132 aa2.6□□□□□ -1.99
USH2A-202ENST00000366942 COL4A2P08572 1712 aa2.6□□□□□ -1.99
USH2A-202ENST00000366942 C8orf17Q9NRJ1 99 aa2.6□□□□□ -1.99
USH2A-202ENST00000366942 S4R3F8 94 aa2.6□□□□□ -1.99
USH2A-202ENST00000366942 DEFB116Q30KQ4 102 aa2.6□□□□□ -1.99
USH2A-202ENST00000366942 C9orf129Q5T035 196 aaKnown RBP2.59□□□□□ -1.99
USH2A-202ENST00000366942 Q6ZQT0 140 aa2.59□□□□□ -1.99
USH2A-202ENST00000366942 C15orf56Q8N910 161 aa2.59□□□□□ -1.99
USH2A-202ENST00000366942 LAMA2P24043 3122 aaKnown RBP2.59□□□□□ -1.99
USH2A-202ENST00000366942 IGIPA6NJ69 53 aa2.59□□□□□ -1.99
USH2A-202ENST00000366942 RAI1Q7Z5J4 1906 aaPredicted RBP2.59□□□□□ -1.99
USH2A-202ENST00000366942 MKI67P46013 3256 aaKnown RBP2.59□□□□□ -1.99
USH2A-202ENST00000366942 DNAH12Q6ZR08 3092 aa2.59□□□□□ -1.99
USH2A-202ENST00000366942 RPS28P62857 69 aaKnown RBP2.59□□□□□ -2
USH2A-202ENST00000366942 EYSQ5T1H1 3165 aa2.59□□□□□ -2
USH2A-202ENST00000366942 BPTFQ12830 3046 aa2.59□□□□□ -2
USH2A-202ENST00000366942 KMT2EQ8IZD2 1858 aa2.59□□□□□ -2
USH2A-202ENST00000366942 CEP350Q5VT06 3117 aa2.58□□□□□ -2
USH2A-202ENST00000366942 FLNAP21333 2647 aaKnown RBP2.58□□□□□ -2
USH2A-202ENST00000366942 A8MTW9 85 aa2.58□□□□□ -2
USH2A-202ENST00000366942 KRTAP10-1P60331 282 aa2.58□□□□□ -2
USH2A-202ENST00000366942 EML5Q05BV3 1969 aa2.58□□□□□ -2
USH2A-202ENST00000366942 K7ERJ3 54 aa2.58□□□□□ -2
USH2A-202ENST00000366942 KLK9Q2XQG4 91 aa2.58□□□□□ -2
USH2A-202ENST00000366942 LINC01600Q96MT4 127 aa2.58□□□□□ -2
USH2A-202ENST00000366942 PRO2289Q9P1D8 64 aa2.58□□□□□ -2
USH2A-202ENST00000366942 TNRC6BQ9UPQ9 1833 aaKnown RBP2.58□□□□□ -2
USH2A-202ENST00000366942 Q6ZR54 194 aa2.57□□□□□ -2
USH2A-202ENST00000366942 TRIAP1O43715 76 aa2.57□□□□□ -2
USH2A-202ENST00000366942 LRP4O75096 1905 aa2.57□□□□□ -2
USH2A-202ENST00000366942 CRIP1P50238 77 aa2.57□□□□□ -2
USH2A-202ENST00000366942 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP2.57□□□□□ -2
USH2A-202ENST00000366942 GAS8-AS1O95177 125 aa2.56□□□□□ -2
USH2A-202ENST00000366942 WDFY3Q8IZQ1 3526 aa2.56□□□□□ -2
USH2A-202ENST00000366942 CHD9Q3L8U1 2897 aa2.56□□□□□ -2
USH2A-202ENST00000366942 IGLV5-45A0A087WSX0 123 aa2.56□□□□□ -2
USH2A-202ENST00000366942 PANO1I0J062 215 aa2.56□□□□□ -2
USH2A-202ENST00000366942 ZCCHC13Q8WW36 166 aaKnown RBP2.56□□□□□ -2
USH2A-202ENST00000366942 UQCR11O14957 56 aa2.56□□□□□ -2
USH2A-202ENST00000366942 TANC2Q9HCD6 1990 aa2.56□□□□□ -2
USH2A-202ENST00000366942 CPAMD8Q8IZJ3 1885 aa2.56□□□□□ -2
USH2A-202ENST00000366942 RPS29P62273 56 aaKnown RBP2.55□□□□□ -2
USH2A-202ENST00000366942 NUP210LQ5VU65 1888 aa2.55□□□□□ -2
USH2A-202ENST00000366942 C20orf166-AS1Q96NR2 134 aa2.55□□□□□ -2
USH2A-202ENST00000366942 XIRP2A4UGR9 3374 aa2.55□□□□□ -2
USH2A-202ENST00000366942 CDH23Q9H251 3354 aa2.55□□□□□ -2
USH2A-202ENST00000366942 Q8N3U1 123 aa2.55□□□□□ -2
USH2A-202ENST00000366942 PCP4P48539 62 aa2.54□□□□□ -2
USH2A-202ENST00000366942 CDC42SE1Q9NRR8 79 aa2.54□□□□□ -2
USH2A-202ENST00000366942 UNC80Q8N2C7 3258 aa2.54□□□□□ -2
USH2A-202ENST00000366942 DMDP11532 3685 aa2.54□□□□□ -2
USH2A-202ENST00000366942 A0A1W2PNN7 141 aa2.54□□□□□ -2
USH2A-202ENST00000366942 SZT2Q5T011 3432 aa2.54□□□□□ -2
USH2A-202ENST00000366942 PLXNB3Q9ULL4 1909 aa2.54□□□□□ -2
USH2A-202ENST00000366942 ZFHX3Q15911 3703 aa2.54□□□□□ -2
USH2A-202ENST00000366942 LAMA3Q16787 3333 aa2.54□□□□□ -2
USH2A-202ENST00000366942 FXYD2P54710 66 aa2.54□□□□□ -2
USH2A-202ENST00000366942 Q5W150 140 aa2.54□□□□□ -2
USH2A-202ENST00000366942 KIAA1549LQ6ZVL6 1849 aa2.53□□□□□ -2
USH2A-202ENST00000366942 FAM104AQ969W3 186 aa2.53□□□□□ -2
USH2A-202ENST00000366942 SPENQ96T58 3664 aaKnown RBP2.53□□□□□ -2
USH2A-202ENST00000366942 FLNCQ14315 2725 aa2.53□□□□□ -2
USH2A-202ENST00000366942 FAM168BA1KXE4 195 aa2.53□□□□□ -2.01
USH2A-202ENST00000366942 ANAPC11Q9NYG5 84 aa2.52□□□□□ -2.01
USH2A-202ENST00000366942 KRTAP29-1A8MX34 341 aaPredicted RBP2.52□□□□□ -2.01
USH2A-202ENST00000366942 SPINK7P58062 85 aa2.52□□□□□ -2.01
USH2A-202ENST00000366942 PTPRBP23467 1997 aa2.52□□□□□ -2.01
USH2A-202ENST00000366942 ZNF106Q9H2Y7 1883 aaKnown RBP2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms