RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 LINC01554Q52M75 96 aa12.02□□□□□ -0.49
SHANK1-202ENST00000359082 A0A0D9SG42 100 aa12.01□□□□□ -0.49
SHANK1-202ENST00000359082 LRRK2Q5S007 2527 aa12□□□□□ -0.49
SHANK1-202ENST00000359082 A0A087WTM6 91 aa12□□□□□ -0.49
SHANK1-202ENST00000359082 H7BZZ5 65 aa11.99□□□□□ -0.49
SHANK1-202ENST00000359082 KRTAP10-3P60369 221 aa11.99□□□□□ -0.49
SHANK1-202ENST00000359082 KTN1-AS1Q86SY8 53 aa11.98□□□□□ -0.49
SHANK1-202ENST00000359082 PRR34Q9NV39 138 aa11.98□□□□□ -0.49
SHANK1-202ENST00000359082 FN1P02751 2386 aaKnown RBP11.98□□□□□ -0.49
SHANK1-202ENST00000359082 C19orf73Q9NVV2 129 aa11.97□□□□□ -0.49
SHANK1-202ENST00000359082 WDR87Q6ZQQ6 2873 aa11.96□□□□□ -0.49
SHANK1-202ENST00000359082 CENPFP49454 3210 aa11.95□□□□□ -0.5
SHANK1-202ENST00000359082 CHD8Q9HCK8 2581 aa11.95□□□□□ -0.5
SHANK1-202ENST00000359082 RBM12B-AS1Q9P1G2 102 aa11.95□□□□□ -0.5
SHANK1-202ENST00000359082 IGLV7-43P04211 117 aa11.95□□□□□ -0.5
SHANK1-202ENST00000359082 LCA10Q71F78 164 aa11.94□□□□□ -0.5
SHANK1-202ENST00000359082 Q8N1X5 172 aa11.94□□□□□ -0.5
SHANK1-202ENST00000359082 ZFYVE26Q68DK2 2539 aa11.93□□□□□ -0.5
SHANK1-202ENST00000359082 JMJD1CQ15652 2540 aa11.93□□□□□ -0.5
SHANK1-202ENST00000359082 PLA2G2DQ9UNK4 145 aa11.92□□□□□ -0.5
SHANK1-202ENST00000359082 TLX1NBP0CAT3 122 aa11.91□□□□□ -0.5
SHANK1-202ENST00000359082 CASC10Q5T4H9 136 aa11.91□□□□□ -0.5
SHANK1-202ENST00000359082 PSORS1C2Q9UIG4 136 aa11.91□□□□□ -0.5
SHANK1-202ENST00000359082 IGLV5-48A0A075B6I7 105 aa11.9□□□□□ -0.5
SHANK1-202ENST00000359082 GIG44P09565 113 aaPredicted RBP11.9□□□□□ -0.5
SHANK1-202ENST00000359082 ABCA12Q86UK0 2595 aa11.89□□□□□ -0.51
SHANK1-202ENST00000359082 CDC42SE1Q9NRR8 79 aa11.88□□□□□ -0.51
SHANK1-202ENST00000359082 ZNF462Q96JM2 2506 aa11.88□□□□□ -0.51
SHANK1-202ENST00000359082 C9orf163Q8N9P6 203 aa11.87□□□□□ -0.51
SHANK1-202ENST00000359082 SPRR4Q96PI1 79 aa11.87□□□□□ -0.51
SHANK1-202ENST00000359082 FAM104AQ969W3 186 aa11.86□□□□□ -0.51
SHANK1-202ENST00000359082 ANKRD11Q6UB99 2663 aaPredicted RBP11.82□□□□□ -0.52
SHANK1-202ENST00000359082 A0A096LNT2 108 aa11.81□□□□□ -0.52
SHANK1-202ENST00000359082 A0A1W2PNM2 257 aa11.8□□□□□ -0.52
SHANK1-202ENST00000359082 LINC00612Q8N6U2 182 aa11.8□□□□□ -0.52
SHANK1-202ENST00000359082 DNAH12Q6ZR08 3092 aa11.8□□□□□ -0.52
SHANK1-202ENST00000359082 ZNF575Q86XF7 245 aa11.8□□□□□ -0.52
SHANK1-202ENST00000359082 USP9XQ93008 2570 aaPredicted RBP11.78□□□□□ -0.52
SHANK1-202ENST00000359082 TLN2Q9Y4G6 2542 aa11.78□□□□□ -0.52
SHANK1-202ENST00000359082 SPTBN4Q9H254 2564 aa11.77□□□□□ -0.52
SHANK1-202ENST00000359082 SPANXA2-OT1Q8N9U9 137 aa11.77□□□□□ -0.53
SHANK1-202ENST00000359082 FASNP49327 2511 aaKnown RBP11.75□□□□□ -0.53
SHANK1-202ENST00000359082 CNBPP62633 177 aaKnown RBP11.74□□□□□ -0.53
SHANK1-202ENST00000359082 PKD1L2Q7Z442 2459 aa11.72□□□□□ -0.53
SHANK1-202ENST00000359082 SETD2Q9BYW2 2564 aaPredicted RBP11.71□□□□□ -0.53
SHANK1-202ENST00000359082 PRR26Q8N8Z3 221 aa11.68□□□□□ -0.54
SHANK1-202ENST00000359082 CEP295Q9C0D2 2601 aa11.66□□□□□ -0.54
SHANK1-202ENST00000359082 Q6ZSA8 131 aa11.66□□□□□ -0.54
SHANK1-202ENST00000359082 ANKRD17O75179 2603 aaKnown RBP11.66□□□□□ -0.54
SHANK1-202ENST00000359082 Q1T7F1 81 aa11.65□□□□□ -0.55
SHANK1-202ENST00000359082 LUZP6Q538Z0 58 aa11.62□□□□□ -0.55
SHANK1-202ENST00000359082 WIPF1O43516 503 aa11.61□□□□□ -0.55
SHANK1-202ENST00000359082 TNP2Q05952 138 aa11.59□□□□□ -0.55
SHANK1-202ENST00000359082 KRTAP1-3Q8IUG1 177 aa11.58□□□□□ -0.55
SHANK1-202ENST00000359082 OCR1Q9BZK8 76 aa11.58□□□□□ -0.56
SHANK1-202ENST00000359082 CAMK2N1Q7Z7J9 78 aa11.58□□□□□ -0.56
SHANK1-202ENST00000359082 F8P00451 2351 aa11.58□□□□□ -0.56
SHANK1-202ENST00000359082 USP9YO00507 2555 aaPredicted RBP11.58□□□□□ -0.56
SHANK1-202ENST00000359082 IGLV7-46A0A075B6I9 117 aa11.56□□□□□ -0.56
SHANK1-202ENST00000359082 M0R2T5 61 aa11.55□□□□□ -0.56
SHANK1-202ENST00000359082 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.53□□□□□ -0.56
SHANK1-202ENST00000359082 A0A1B0GU33 70 aa11.52□□□□□ -0.56
SHANK1-202ENST00000359082 HRES1P13985 223 aa11.52□□□□□ -0.57
SHANK1-202ENST00000359082 LINC00483Q53H64 154 aa11.52□□□□□ -0.57
SHANK1-202ENST00000359082 KRTAP1-1Q07627 177 aa11.5□□□□□ -0.57
SHANK1-202ENST00000359082 PCNTO95613 3336 aa11.5□□□□□ -0.57
SHANK1-202ENST00000359082 Q75L30 129 aa11.47□□□□□ -0.57
SHANK1-202ENST00000359082 C5orf42Q9H799 3197 aa11.47□□□□□ -0.57
SHANK1-202ENST00000359082 S4R3F8 94 aa11.44□□□□□ -0.58
SHANK1-202ENST00000359082 POLQO75417 2590 aa11.43□□□□□ -0.58
SHANK1-202ENST00000359082 CEP350Q5VT06 3117 aa11.41□□□□□ -0.58
SHANK1-202ENST00000359082 Q5XG85 94 aa11.41□□□□□ -0.58
SHANK1-202ENST00000359082 MTORP42345 2549 aa11.41□□□□□ -0.58
SHANK1-202ENST00000359082 FAM229BQ4G0N7 80 aa11.39□□□□□ -0.59
SHANK1-202ENST00000359082 ZCCHC13Q8WW36 166 aaKnown RBP11.38□□□□□ -0.59
SHANK1-202ENST00000359082 EPG5Q9HCE0 2579 aa11.36□□□□□ -0.59
SHANK1-202ENST00000359082 Q8N9P0 234 aaPredicted RBP11.36□□□□□ -0.59
SHANK1-202ENST00000359082 ACANP16112 2415 aa11.35□□□□□ -0.59
SHANK1-202ENST00000359082 MMP24-AS1A0A0U1RRL7 71 aa11.35□□□□□ -0.59
SHANK1-202ENST00000359082 LINC01558Q9Y6Z2 57 aa11.34□□□□□ -0.59
SHANK1-202ENST00000359082 H3BS24 57 aa11.32□□□□□ -0.6
SHANK1-202ENST00000359082 FP248Q71RG6 208 aaPredicted RBP11.31□□□□□ -0.6
SHANK1-202ENST00000359082 DMAC1Q96GE9 116 aa11.31□□□□□ -0.6
SHANK1-202ENST00000359082 PRAC1Q96KF2 57 aa11.31□□□□□ -0.6
SHANK1-202ENST00000359082 CSAG1Q6PB30 78 aa11.3□□□□□ -0.6
SHANK1-202ENST00000359082 PLAC8Q9NZF1 115 aa11.27□□□□□ -0.6
SHANK1-202ENST00000359082 CYSTM1Q9H1C7 97 aa11.27□□□□□ -0.61
SHANK1-202ENST00000359082 Q5W150 140 aa11.26□□□□□ -0.61
SHANK1-202ENST00000359082 CR1P17927 2039 aa11.26□□□□□ -0.61
SHANK1-202ENST00000359082 Q8NDZ9 215 aa11.25□□□□□ -0.61
SHANK1-202ENST00000359082 FLNBO75369 2602 aaKnown RBP11.23□□□□□ -0.61
SHANK1-202ENST00000359082 Q5VV11 94 aa11.22□□□□□ -0.61
SHANK1-202ENST00000359082 R4GN34 69 aa11.17□□□□□ -0.62
SHANK1-202ENST00000359082 SPINK7P58062 85 aa11.16□□□□□ -0.62
SHANK1-202ENST00000359082 SPRR1AP35321 89 aa11.13□□□□□ -0.63
SHANK1-202ENST00000359082 HECTD1Q9ULT8 2610 aa11.12□□□□□ -0.63
SHANK1-202ENST00000359082 A0A0A0MQY5 61 aa11.12□□□□□ -0.63
SHANK1-202ENST00000359082 LINC00472Q9H8W2 130 aa11.11□□□□□ -0.63
SHANK1-202ENST00000359082 Q5VSD8 79 aa11.08□□□□□ -0.64
SHANK1-202ENST00000359082 MKI67P46013 3256 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms