RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 LINC01554Q52M75 96 aa12.02□□□□□ -0.49
SHANK1-202ENST00000359082 A0A0D9SG42 100 aa12.01□□□□□ -0.49
SHANK1-202ENST00000359082 LRRK2Q5S007 2527 aa12□□□□□ -0.49
SHANK1-202ENST00000359082 A0A087WTM6 91 aa12□□□□□ -0.49
SHANK1-202ENST00000359082 H7BZZ5 65 aa11.99□□□□□ -0.49
SHANK1-202ENST00000359082 KRTAP10-3P60369 221 aa11.99□□□□□ -0.49
SHANK1-202ENST00000359082 KTN1-AS1Q86SY8 53 aa11.98□□□□□ -0.49
SHANK1-202ENST00000359082 PRR34Q9NV39 138 aa11.98□□□□□ -0.49
SHANK1-202ENST00000359082 FN1P02751 2386 aaKnown RBP11.98□□□□□ -0.49
SHANK1-202ENST00000359082 C19orf73Q9NVV2 129 aa11.97□□□□□ -0.49
SHANK1-202ENST00000359082 WDR87Q6ZQQ6 2873 aa11.96□□□□□ -0.49
SHANK1-202ENST00000359082 CENPFP49454 3210 aa11.95□□□□□ -0.5
SHANK1-202ENST00000359082 CHD8Q9HCK8 2581 aa11.95□□□□□ -0.5
SHANK1-202ENST00000359082 RBM12B-AS1Q9P1G2 102 aa11.95□□□□□ -0.5
SHANK1-202ENST00000359082 IGLV7-43P04211 117 aa11.95□□□□□ -0.5
SHANK1-202ENST00000359082 LCA10Q71F78 164 aa11.94□□□□□ -0.5
SHANK1-202ENST00000359082 Q8N1X5 172 aa11.94□□□□□ -0.5
SHANK1-202ENST00000359082 ZFYVE26Q68DK2 2539 aa11.93□□□□□ -0.5
SHANK1-202ENST00000359082 JMJD1CQ15652 2540 aa11.93□□□□□ -0.5
SHANK1-202ENST00000359082 PLA2G2DQ9UNK4 145 aa11.92□□□□□ -0.5
SHANK1-202ENST00000359082 TLX1NBP0CAT3 122 aa11.91□□□□□ -0.5
SHANK1-202ENST00000359082 CASC10Q5T4H9 136 aa11.91□□□□□ -0.5
SHANK1-202ENST00000359082 PSORS1C2Q9UIG4 136 aa11.91□□□□□ -0.5
SHANK1-202ENST00000359082 IGLV5-48A0A075B6I7 105 aa11.9□□□□□ -0.5
SHANK1-202ENST00000359082 GIG44P09565 113 aaPredicted RBP11.9□□□□□ -0.5
SHANK1-202ENST00000359082 ABCA12Q86UK0 2595 aa11.89□□□□□ -0.51
SHANK1-202ENST00000359082 CDC42SE1Q9NRR8 79 aa11.88□□□□□ -0.51
SHANK1-202ENST00000359082 ZNF462Q96JM2 2506 aa11.88□□□□□ -0.51
SHANK1-202ENST00000359082 C9orf163Q8N9P6 203 aa11.87□□□□□ -0.51
SHANK1-202ENST00000359082 SPRR4Q96PI1 79 aa11.87□□□□□ -0.51
SHANK1-202ENST00000359082 FAM104AQ969W3 186 aa11.86□□□□□ -0.51
SHANK1-202ENST00000359082 ANKRD11Q6UB99 2663 aaPredicted RBP11.82□□□□□ -0.52
SHANK1-202ENST00000359082 A0A096LNT2 108 aa11.81□□□□□ -0.52
SHANK1-202ENST00000359082 A0A1W2PNM2 257 aa11.8□□□□□ -0.52
SHANK1-202ENST00000359082 LINC00612Q8N6U2 182 aa11.8□□□□□ -0.52
SHANK1-202ENST00000359082 DNAH12Q6ZR08 3092 aa11.8□□□□□ -0.52
SHANK1-202ENST00000359082 ZNF575Q86XF7 245 aa11.8□□□□□ -0.52
SHANK1-202ENST00000359082 USP9XQ93008 2570 aaPredicted RBP11.78□□□□□ -0.52
SHANK1-202ENST00000359082 TLN2Q9Y4G6 2542 aa11.78□□□□□ -0.52
SHANK1-202ENST00000359082 SPTBN4Q9H254 2564 aa11.77□□□□□ -0.52
SHANK1-202ENST00000359082 SPANXA2-OT1Q8N9U9 137 aa11.77□□□□□ -0.53
SHANK1-202ENST00000359082 FASNP49327 2511 aaKnown RBP11.75□□□□□ -0.53
SHANK1-202ENST00000359082 CNBPP62633 177 aaKnown RBP11.74□□□□□ -0.53
SHANK1-202ENST00000359082 PKD1L2Q7Z442 2459 aa11.72□□□□□ -0.53
SHANK1-202ENST00000359082 SETD2Q9BYW2 2564 aaPredicted RBP11.71□□□□□ -0.53
SHANK1-202ENST00000359082 PRR26Q8N8Z3 221 aa11.68□□□□□ -0.54
SHANK1-202ENST00000359082 CEP295Q9C0D2 2601 aa11.66□□□□□ -0.54
SHANK1-202ENST00000359082 Q6ZSA8 131 aa11.66□□□□□ -0.54
SHANK1-202ENST00000359082 ANKRD17O75179 2603 aaKnown RBP11.66□□□□□ -0.54
SHANK1-202ENST00000359082 Q1T7F1 81 aa11.65□□□□□ -0.55
SHANK1-202ENST00000359082 LUZP6Q538Z0 58 aa11.62□□□□□ -0.55
SHANK1-202ENST00000359082 WIPF1O43516 503 aa11.61□□□□□ -0.55
SHANK1-202ENST00000359082 TNP2Q05952 138 aa11.59□□□□□ -0.55
SHANK1-202ENST00000359082 KRTAP1-3Q8IUG1 177 aa11.58□□□□□ -0.55
SHANK1-202ENST00000359082 OCR1Q9BZK8 76 aa11.58□□□□□ -0.56
SHANK1-202ENST00000359082 CAMK2N1Q7Z7J9 78 aa11.58□□□□□ -0.56
SHANK1-202ENST00000359082 F8P00451 2351 aa11.58□□□□□ -0.56
SHANK1-202ENST00000359082 USP9YO00507 2555 aaPredicted RBP11.58□□□□□ -0.56
SHANK1-202ENST00000359082 IGLV7-46A0A075B6I9 117 aa11.56□□□□□ -0.56
SHANK1-202ENST00000359082 M0R2T5 61 aa11.55□□□□□ -0.56
SHANK1-202ENST00000359082 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.53□□□□□ -0.56
SHANK1-202ENST00000359082 A0A1B0GU33 70 aa11.52□□□□□ -0.56
SHANK1-202ENST00000359082 HRES1P13985 223 aa11.52□□□□□ -0.57
SHANK1-202ENST00000359082 LINC00483Q53H64 154 aa11.52□□□□□ -0.57
SHANK1-202ENST00000359082 KRTAP1-1Q07627 177 aa11.5□□□□□ -0.57
SHANK1-202ENST00000359082 PCNTO95613 3336 aa11.5□□□□□ -0.57
SHANK1-202ENST00000359082 Q75L30 129 aa11.47□□□□□ -0.57
SHANK1-202ENST00000359082 C5orf42Q9H799 3197 aa11.47□□□□□ -0.57
SHANK1-202ENST00000359082 S4R3F8 94 aa11.44□□□□□ -0.58
SHANK1-202ENST00000359082 POLQO75417 2590 aa11.43□□□□□ -0.58
SHANK1-202ENST00000359082 CEP350Q5VT06 3117 aa11.41□□□□□ -0.58
SHANK1-202ENST00000359082 Q5XG85 94 aa11.41□□□□□ -0.58
SHANK1-202ENST00000359082 MTORP42345 2549 aa11.41□□□□□ -0.58
SHANK1-202ENST00000359082 FAM229BQ4G0N7 80 aa11.39□□□□□ -0.59
SHANK1-202ENST00000359082 ZCCHC13Q8WW36 166 aaKnown RBP11.38□□□□□ -0.59
SHANK1-202ENST00000359082 EPG5Q9HCE0 2579 aa11.36□□□□□ -0.59
SHANK1-202ENST00000359082 Q8N9P0 234 aaPredicted RBP11.36□□□□□ -0.59
SHANK1-202ENST00000359082 ACANP16112 2415 aa11.35□□□□□ -0.59
SHANK1-202ENST00000359082 MMP24-AS1A0A0U1RRL7 71 aa11.35□□□□□ -0.59
SHANK1-202ENST00000359082 LINC01558Q9Y6Z2 57 aa11.34□□□□□ -0.59
SHANK1-202ENST00000359082 H3BS24 57 aa11.32□□□□□ -0.6
SHANK1-202ENST00000359082 FP248Q71RG6 208 aaPredicted RBP11.31□□□□□ -0.6
SHANK1-202ENST00000359082 DMAC1Q96GE9 116 aa11.31□□□□□ -0.6
SHANK1-202ENST00000359082 PRAC1Q96KF2 57 aa11.31□□□□□ -0.6
SHANK1-202ENST00000359082 CSAG1Q6PB30 78 aa11.3□□□□□ -0.6
SHANK1-202ENST00000359082 PLAC8Q9NZF1 115 aa11.27□□□□□ -0.6
SHANK1-202ENST00000359082 CYSTM1Q9H1C7 97 aa11.27□□□□□ -0.61
SHANK1-202ENST00000359082 Q5W150 140 aa11.26□□□□□ -0.61
SHANK1-202ENST00000359082 CR1P17927 2039 aa11.26□□□□□ -0.61
SHANK1-202ENST00000359082 Q8NDZ9 215 aa11.25□□□□□ -0.61
SHANK1-202ENST00000359082 FLNBO75369 2602 aaKnown RBP11.23□□□□□ -0.61
SHANK1-202ENST00000359082 Q5VV11 94 aa11.22□□□□□ -0.61
SHANK1-202ENST00000359082 R4GN34 69 aa11.17□□□□□ -0.62
SHANK1-202ENST00000359082 SPINK7P58062 85 aa11.16□□□□□ -0.62
SHANK1-202ENST00000359082 SPRR1AP35321 89 aa11.13□□□□□ -0.63
SHANK1-202ENST00000359082 HECTD1Q9ULT8 2610 aa11.12□□□□□ -0.63
SHANK1-202ENST00000359082 A0A0A0MQY5 61 aa11.12□□□□□ -0.63
SHANK1-202ENST00000359082 LINC00472Q9H8W2 130 aa11.11□□□□□ -0.63
SHANK1-202ENST00000359082 Q5VSD8 79 aa11.08□□□□□ -0.64
SHANK1-202ENST00000359082 MKI67P46013 3256 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms