RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 ABCA2Q9BZC7 2435 aa4.76□□□□□ -1.65
VPS13A-202ENST00000357409 IGLV7-43P04211 117 aa4.76□□□□□ -1.65
VPS13A-202ENST00000357409 LINC00612Q8N6U2 182 aa4.76□□□□□ -1.65
VPS13A-202ENST00000357409 Q6ZSA8 131 aa4.76□□□□□ -1.65
VPS13A-202ENST00000357409 ATP5EP56381 51 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-202ENST00000357409 WDFY3Q8IZQ1 3526 aa4.75□□□□□ -1.65
VPS13A-202ENST00000357409 COA5Q86WW8 74 aa4.75□□□□□ -1.65
VPS13A-202ENST00000357409 GIG44P09565 113 aaPredicted RBP4.75□□□□□ -1.65
VPS13A-202ENST00000357409 C19orf73Q9NVV2 129 aa4.75□□□□□ -1.65
VPS13A-202ENST00000357409 C8orf17Q9NRJ1 99 aa4.73□□□□□ -1.65
VPS13A-202ENST00000357409 GVQW2A0A096LPI5 108 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-202ENST00000357409 PRR15Q8IV56 129 aa4.73□□□□□ -1.65
VPS13A-202ENST00000357409 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-202ENST00000357409 CPAMD8Q8IZJ3 1885 aa4.73□□□□□ -1.65
VPS13A-202ENST00000357409 COX8CQ7Z4L0 72 aa4.73□□□□□ -1.65
VPS13A-202ENST00000357409 MUC22E2RYF6 1773 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-202ENST00000357409 KRTAP1-3Q8IUG1 177 aa4.73□□□□□ -1.65
VPS13A-202ENST00000357409 LINC01561Q8N1V8 128 aa4.72□□□□□ -1.65
VPS13A-202ENST00000357409 BPTFQ12830 3046 aa4.72□□□□□ -1.65
VPS13A-202ENST00000357409 A8MWP4 228 aa4.72□□□□□ -1.65
VPS13A-202ENST00000357409 H3BNG1 76 aa4.72□□□□□ -1.65
VPS13A-202ENST00000357409 IGLV7-46A0A075B6I9 117 aa4.72□□□□□ -1.65
VPS13A-202ENST00000357409 PCSK5Q92824 1860 aa4.71□□□□□ -1.66
VPS13A-202ENST00000357409 C9orf163Q8N9P6 203 aa4.71□□□□□ -1.66
VPS13A-202ENST00000357409 F8WDY8 70 aa4.71□□□□□ -1.66
VPS13A-202ENST00000357409 Q5VSD8 79 aa4.7□□□□□ -1.66
VPS13A-202ENST00000357409 CAMK2N1Q7Z7J9 78 aa4.7□□□□□ -1.66
VPS13A-202ENST00000357409 LAMA1P25391 3075 aa4.7□□□□□ -1.66
VPS13A-202ENST00000357409 TP53AIP1Q9HCN2 124 aa4.69□□□□□ -1.66
VPS13A-202ENST00000357409 COL27A1Q8IZC6 1860 aaPredicted RBP4.68□□□□□ -1.66
VPS13A-202ENST00000357409 ZFHX4Q86UP3 3567 aa4.68□□□□□ -1.66
VPS13A-202ENST00000357409 CHD7Q9P2D1 2997 aa4.68□□□□□ -1.66
VPS13A-202ENST00000357409 MIR22HGQ0VDD5 57 aa4.68□□□□□ -1.66
VPS13A-202ENST00000357409 LITAFQ99732 161 aa4.67□□□□□ -1.66
VPS13A-202ENST00000357409 A0A1B0GVX0 72 aa4.67□□□□□ -1.66
VPS13A-202ENST00000357409 ATRXP46100 2492 aa4.67□□□□□ -1.66
VPS13A-202ENST00000357409 LINC00336Q6ZUF6 198 aa4.67□□□□□ -1.66
VPS13A-202ENST00000357409 C8orf87E5RJ46 101 aa4.66□□□□□ -1.66
VPS13A-202ENST00000357409 KRTAP1-1Q07627 177 aa4.65□□□□□ -1.66
VPS13A-202ENST00000357409 A0A096LNT2 108 aa4.64□□□□□ -1.67
VPS13A-202ENST00000357409 COL4A2P08572 1712 aa4.64□□□□□ -1.67
VPS13A-202ENST00000357409 NCOR2Q9Y618 2525 aa4.64□□□□□ -1.67
VPS13A-202ENST00000357409 KCNQ1DNQ9H478 68 aa4.63□□□□□ -1.67
VPS13A-202ENST00000357409 A0A1W2PNM2 257 aa4.63□□□□□ -1.67
VPS13A-202ENST00000357409 UQCR11O14957 56 aa4.63□□□□□ -1.67
VPS13A-202ENST00000357409 TLX1NBP0CAT3 122 aa4.63□□□□□ -1.67
VPS13A-202ENST00000357409 SPRR4Q96PI1 79 aa4.63□□□□□ -1.67
VPS13A-202ENST00000357409 WDR87Q6ZQQ6 2873 aa4.62□□□□□ -1.67
VPS13A-202ENST00000357409 DOPEY1Q5JWR5 2465 aa4.62□□□□□ -1.67
VPS13A-202ENST00000357409 PRO0461Q9UI25 63 aa4.61□□□□□ -1.67
VPS13A-202ENST00000357409 LOC101927531A0A1B0GV80 90 aa4.61□□□□□ -1.67
VPS13A-202ENST00000357409 CCDC168Q8NDH2 2452 aa4.61□□□□□ -1.67
VPS13A-202ENST00000357409 RELNP78509 3460 aa4.61□□□□□ -1.67
VPS13A-202ENST00000357409 KRTAP10-2P60368 255 aa4.61□□□□□ -1.67
VPS13A-202ENST00000357409 PRR34Q9NV39 138 aa4.6□□□□□ -1.67
VPS13A-202ENST00000357409 FAM104AQ969W3 186 aa4.59□□□□□ -1.68
VPS13A-202ENST00000357409 LOC110117498A0A087WWA1 95 aa4.58□□□□□ -1.68
VPS13A-202ENST00000357409 Q8N9P0 234 aaPredicted RBP4.57□□□□□ -1.68
VPS13A-202ENST00000357409 C2CD3Q4AC94 2353 aa4.57□□□□□ -1.68
VPS13A-202ENST00000357409 CSMD1Q96PZ7 3565 aa4.57□□□□□ -1.68
VPS13A-202ENST00000357409 LINC01546A6NGU7 62 aa4.56□□□□□ -1.68
VPS13A-202ENST00000357409 ATMQ13315 3056 aa4.56□□□□□ -1.68
VPS13A-202ENST00000357409 COL12A1Q99715 3063 aa4.56□□□□□ -1.68
VPS13A-202ENST00000357409 KRTAP10-1P60331 282 aa4.56□□□□□ -1.68
VPS13A-202ENST00000357409 JMJD1CQ15652 2540 aa4.55□□□□□ -1.68
VPS13A-202ENST00000357409 FRYLO94915 3013 aa4.55□□□□□ -1.68
VPS13A-202ENST00000357409 NAV2Q8IVL1 2488 aa4.55□□□□□ -1.68
VPS13A-202ENST00000357409 ACACBO00763 2458 aa4.54□□□□□ -1.68
VPS13A-202ENST00000357409 IGF2RP11717 2491 aa4.54□□□□□ -1.68
VPS13A-202ENST00000357409 Q8NDZ9 215 aa4.54□□□□□ -1.68
VPS13A-202ENST00000357409 CD164Q04900 197 aa4.53□□□□□ -1.68
VPS13A-202ENST00000357409 TTC28Q96AY4 2481 aa4.52□□□□□ -1.69
VPS13A-202ENST00000357409 PRO0628Q9UI54 55 aa4.52□□□□□ -1.69
VPS13A-202ENST00000357409 CDC42SE1Q9NRR8 79 aa4.52□□□□□ -1.69
VPS13A-202ENST00000357409 PANO1I0J062 215 aa4.51□□□□□ -1.69
VPS13A-202ENST00000357409 KRTAP1-5Q9BYS1 174 aa4.51□□□□□ -1.69
VPS13A-202ENST00000357409 HRES1P13985 223 aa4.51□□□□□ -1.69
VPS13A-202ENST00000357409 TLN1Q9Y490 2541 aaKnown RBP4.5□□□□□ -1.69
VPS13A-202ENST00000357409 S4R3F8 94 aa4.5□□□□□ -1.69
VPS13A-202ENST00000357409 FRYQ5TBA9 3013 aa4.5□□□□□ -1.69
VPS13A-202ENST00000357409 SPINK7P58062 85 aa4.5□□□□□ -1.69
VPS13A-202ENST00000357409 CUBNO60494 3623 aa4.5□□□□□ -1.69
VPS13A-202ENST00000357409 BOD1L1Q8NFC6 3051 aa4.5□□□□□ -1.69
VPS13A-202ENST00000357409 LAMA5O15230 3695 aa4.5□□□□□ -1.69
VPS13A-202ENST00000357409 CNBPP62633 177 aaKnown RBP4.49□□□□□ -1.69
VPS13A-202ENST00000357409 FN1P02751 2386 aaKnown RBP4.49□□□□□ -1.69
VPS13A-202ENST00000357409 H3BPC8 53 aa4.49□□□□□ -1.69
VPS13A-202ENST00000357409 R4GN34 69 aa4.49□□□□□ -1.69
VPS13A-202ENST00000357409 PRAC1Q96KF2 57 aa4.49□□□□□ -1.69
VPS13A-202ENST00000357409 CACNA1AO00555 2505 aa4.49□□□□□ -1.69
VPS13A-202ENST00000357409 FAM229BQ4G0N7 80 aa4.48□□□□□ -1.69
VPS13A-202ENST00000357409 ANKHD1Q8IWZ3 2542 aaKnown RBP4.48□□□□□ -1.69
VPS13A-202ENST00000357409 LUZP6Q538Z0 58 aa4.47□□□□□ -1.69
VPS13A-202ENST00000357409 KLKP1Q107X0 134 aa4.47□□□□□ -1.69
VPS13A-202ENST00000357409 MYO9AB2RTY4 2548 aa4.47□□□□□ -1.69
VPS13A-202ENST00000357409 SPATA8Q6RVD6 105 aa4.46□□□□□ -1.69
VPS13A-202ENST00000357409 MGAQ8IWI9 3026 aa4.46□□□□□ -1.7
VPS13A-202ENST00000357409 A0A1B0GU33 70 aa4.45□□□□□ -1.7
VPS13A-202ENST00000357409 A0A1B0GVY2 172 aa4.45□□□□□ -1.7
VPS13A-202ENST00000357409 H7BZZ5 65 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms