RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.63□□□□□ -0.39
COL9A3-201ENST00000343916 DSCR8Q96T75 97 aa12.63□□□□□ -0.39
COL9A3-201ENST00000343916 F8WDY8 70 aa12.61□□□□□ -0.39
COL9A3-201ENST00000343916 LINC00528Q8N1L1 170 aa12.61□□□□□ -0.39
COL9A3-201ENST00000343916 DPH3Q96FX2 82 aa12.61□□□□□ -0.39
COL9A3-201ENST00000343916 LOC110117498A0A087WWA1 95 aa12.61□□□□□ -0.39
COL9A3-201ENST00000343916 TRBV7-6A0A0J9YX20 115 aa12.61□□□□□ -0.39
COL9A3-201ENST00000343916 NKAPP1Q8N9T2 125 aa12.6□□□□□ -0.39
COL9A3-201ENST00000343916 LYSTQ99698 3801 aa12.59□□□□□ -0.39
COL9A3-201ENST00000343916 FAM168BA1KXE4 195 aa12.59□□□□□ -0.39
COL9A3-201ENST00000343916 RPS28P62857 69 aaKnown RBP12.58□□□□□ -0.4
COL9A3-201ENST00000343916 C7orf33Q8WU49 177 aa12.58□□□□□ -0.4
COL9A3-201ENST00000343916 STAB2Q8WWQ8 2551 aa12.58□□□□□ -0.4
COL9A3-201ENST00000343916 DNAH1Q9P2D7 4330 aa12.57□□□□□ -0.4
COL9A3-201ENST00000343916 COL7A1Q02388 2944 aa12.56□□□□□ -0.4
COL9A3-201ENST00000343916 OXTP01178 125 aa12.56□□□□□ -0.4
COL9A3-201ENST00000343916 RPL37AP8A6NKH3 93 aa12.55□□□□□ -0.4
COL9A3-201ENST00000343916 H3BQ85 93 aa12.55□□□□□ -0.4
COL9A3-201ENST00000343916 HAMPP81172 84 aa12.54□□□□□ -0.4
COL9A3-201ENST00000343916 C20orf197Q8N268 126 aa12.54□□□□□ -0.4
COL9A3-201ENST00000343916 KCNQ1DNQ9H478 68 aa12.54□□□□□ -0.4
COL9A3-201ENST00000343916 TLX1NBP0CAT3 122 aa12.54□□□□□ -0.4
COL9A3-201ENST00000343916 LINC01547P58512 204 aaPredicted RBP12.53□□□□□ -0.4
COL9A3-201ENST00000343916 TRBV7-4A0A0J9YYF1 115 aa12.52□□□□□ -0.4
COL9A3-201ENST00000343916 Q6ZVQ6 151 aa12.52□□□□□ -0.4
COL9A3-201ENST00000343916 KRTAP7-1Q8IUC3 87 aa12.51□□□□□ -0.41
COL9A3-201ENST00000343916 RMI2Q96E14 147 aa12.5□□□□□ -0.41
COL9A3-201ENST00000343916 PDE6GP18545 87 aa12.5□□□□□ -0.41
COL9A3-201ENST00000343916 DEFB105AQ8NG35 78 aa12.49□□□□□ -0.41
COL9A3-201ENST00000343916 KRTAP1-5Q9BYS1 174 aa12.49□□□□□ -0.41
COL9A3-201ENST00000343916 PLA2G2DQ9UNK4 145 aa12.47□□□□□ -0.41
COL9A3-201ENST00000343916 DNAH10Q8IVF4 4471 aa12.46□□□□□ -0.41
COL9A3-201ENST00000343916 SCXQ7RTU7 201 aa12.46□□□□□ -0.42
COL9A3-201ENST00000343916 IGLV1-50A0A075B6I6 118 aa12.45□□□□□ -0.42
COL9A3-201ENST00000343916 Q9BRP9 147 aa12.44□□□□□ -0.42
COL9A3-201ENST00000343916 Q6ZRX8 168 aa12.43□□□□□ -0.42
COL9A3-201ENST00000343916 Q8N377 158 aa12.43□□□□□ -0.42
COL9A3-201ENST00000343916 KRTAP4-16G5E9R7 235 aaPredicted RBP12.43□□□□□ -0.42
COL9A3-201ENST00000343916 TRAV7A0A075B6U4 112 aa12.42□□□□□ -0.42
COL9A3-201ENST00000343916 C5orf47Q569G3 176 aa12.42□□□□□ -0.42
COL9A3-201ENST00000343916 IGLV5-37A0A075B6J1 123 aa12.42□□□□□ -0.42
COL9A3-201ENST00000343916 MRPL55Q7Z7F7 128 aaKnown RBP12.41□□□□□ -0.42
COL9A3-201ENST00000343916 DNAH9Q9NYC9 4486 aa12.41□□□□□ -0.42
COL9A3-201ENST00000343916 TENM2Q9NT68 2774 aa12.41□□□□□ -0.42
COL9A3-201ENST00000343916 ETDCA0A1B0GVM5 59 aa12.39□□□□□ -0.43
COL9A3-201ENST00000343916 PRYO14603 147 aa12.39□□□□□ -0.43
COL9A3-201ENST00000343916 SNURFQ9Y675 71 aa12.39□□□□□ -0.43
COL9A3-201ENST00000343916 SPRR1AP35321 89 aa12.39□□□□□ -0.43
COL9A3-201ENST00000343916 CXCL6P80162 114 aa12.39□□□□□ -0.43
COL9A3-201ENST00000343916 C4orf26Q17RF5 130 aa12.39□□□□□ -0.43
COL9A3-201ENST00000343916 FAM236DA0A1B0GTK5 79 aa12.38□□□□□ -0.43
COL9A3-201ENST00000343916 FAM236CP0DP71 79 aa12.38□□□□□ -0.43
COL9A3-201ENST00000343916 ST20-AS1Q8NBB2 130 aa12.38□□□□□ -0.43
COL9A3-201ENST00000343916 H7BZZ5 65 aa12.38□□□□□ -0.43
COL9A3-201ENST00000343916 UBE2DNLQ8IWF7 75 aa12.37□□□□□ -0.43
COL9A3-201ENST00000343916 DHRS4-AS1Q9P1J3 65 aa12.37□□□□□ -0.43
COL9A3-201ENST00000343916 IGKV2-24A0A0C4DH68 120 aa12.36□□□□□ -0.43
COL9A3-201ENST00000343916 PSCAO43653 123 aa12.36□□□□□ -0.43
COL9A3-201ENST00000343916 Q5XG85 94 aa12.36□□□□□ -0.43
COL9A3-201ENST00000343916 CSMD3Q7Z407 3707 aa12.36□□□□□ -0.43
COL9A3-201ENST00000343916 BCE1O60756 84 aa12.35□□□□□ -0.43
COL9A3-201ENST00000343916 ERC2-IT1O76042 136 aa12.35□□□□□ -0.43
COL9A3-201ENST00000343916 A0A096LNI7 61 aa12.35□□□□□ -0.43
COL9A3-201ENST00000343916 APLNQ9ULZ1 77 aa12.35□□□□□ -0.43
COL9A3-201ENST00000343916 C3orf84H3BNL1 204 aa12.34□□□□□ -0.43
COL9A3-201ENST00000343916 DNAH7Q8WXX0 4024 aa12.34□□□□□ -0.43
COL9A3-201ENST00000343916 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.34□□□□□ -0.43
COL9A3-201ENST00000343916 HRCT1Q6UXD1 115 aa12.33□□□□□ -0.44
COL9A3-201ENST00000343916 UBE2BP63146 152 aa12.32□□□□□ -0.44
COL9A3-201ENST00000343916 KLKP1Q107X0 134 aa12.32□□□□□ -0.44
COL9A3-201ENST00000343916 IGLV5-48A0A075B6I7 105 aa12.31□□□□□ -0.44
COL9A3-201ENST00000343916 Q8N9L7 120 aa12.31□□□□□ -0.44
COL9A3-201ENST00000343916 REG3GQ6UW15 175 aa12.3□□□□□ -0.44
COL9A3-201ENST00000343916 A0A1W2PNN7 141 aa12.3□□□□□ -0.44
COL9A3-201ENST00000343916 DNHD1Q96M86 4753 aa12.29□□□□□ -0.44
COL9A3-201ENST00000343916 F8WEM9 126 aa12.29□□□□□ -0.44
COL9A3-201ENST00000343916 C16orf90A8MZG2 172 aa12.28□□□□□ -0.44
COL9A3-201ENST00000343916 CNBPP62633 177 aaKnown RBP12.28□□□□□ -0.44
COL9A3-201ENST00000343916 B9D2Q9BPU9 175 aa12.27□□□□□ -0.45
COL9A3-201ENST00000343916 NREPQ16612 68 aa12.26□□□□□ -0.45
COL9A3-201ENST00000343916 CHTF8P0CG12 524 aa12.25□□□□□ -0.45
COL9A3-201ENST00000343916 TNP2Q05952 138 aa12.25□□□□□ -0.45
COL9A3-201ENST00000343916 SERP1Q9Y6X1 66 aa12.25□□□□□ -0.45
COL9A3-201ENST00000343916 PRLHP81277 87 aa12.25□□□□□ -0.45
COL9A3-201ENST00000343916 A0A1W2PNM2 257 aa12.24□□□□□ -0.45
COL9A3-201ENST00000343916 C1orf137Q5JT78 98 aa12.24□□□□□ -0.45
COL9A3-201ENST00000343916 BPY2O14599 106 aa12.23□□□□□ -0.45
COL9A3-201ENST00000343916 PLECQ15149 4684 aaKnown RBP12.22□□□□□ -0.45
COL9A3-201ENST00000343916 EPM2AB3EWF7 344 aa12.21□□□□□ -0.45
COL9A3-201ENST00000343916 FUSP35637 526 aaKnown RBP eCLIP12.21□□□□□ -0.45
COL9A3-201ENST00000343916 IGKV4-1P06312 121 aa12.2□□□□□ -0.46
COL9A3-201ENST00000343916 KRTAP11-1Q8IUC1 163 aa12.19□□□□□ -0.46
COL9A3-201ENST00000343916 A0A0G2JQZ4 141 aa12.18□□□□□ -0.46
COL9A3-201ENST00000343916 PHF5AQ7RTV0 110 aaKnown RBP12.18□□□□□ -0.46
COL9A3-201ENST00000343916 SMIM29Q86T20 159 aa12.18□□□□□ -0.46
COL9A3-201ENST00000343916 HIGD2AQ9BW72 106 aa12.18□□□□□ -0.46
COL9A3-201ENST00000343916 DYNC2H1Q8NCM8 4307 aaKnown RBP12.18□□□□□ -0.46
COL9A3-201ENST00000343916 PRKDCP78527 4128 aaKnown RBP12.17□□□□□ -0.46
COL9A3-201ENST00000343916 TMEM254Q8TBM7 123 aa12.17□□□□□ -0.46
COL9A3-201ENST00000343916 C14orf177Q52M58 125 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms