RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 H3BUA1 57 aa3.79□□□□□ -1.8
CSDE1-202ENST00000339438 PAX4O43316 350 aa3.79□□□□□ -1.8
CSDE1-202ENST00000339438 NREPQ16612 68 aa3.79□□□□□ -1.8
CSDE1-202ENST00000339438 KRTAP17-1Q9BYP8 105 aa3.79□□□□□ -1.8
CSDE1-202ENST00000339438 C19orf73Q9NVV2 129 aa3.79□□□□□ -1.8
CSDE1-202ENST00000339438 PRR3P79522 188 aaKnown RBP3.79□□□□□ -1.8
CSDE1-202ENST00000339438 CD164Q04900 197 aa3.79□□□□□ -1.8
CSDE1-202ENST00000339438 KRTAP10-11P60412 298 aa3.79□□□□□ -1.8
CSDE1-202ENST00000339438 CD164L2Q6UWJ8 174 aa3.79□□□□□ -1.8
CSDE1-202ENST00000339438 LINC00612Q8N6U2 182 aa3.78□□□□□ -1.8
CSDE1-202ENST00000339438 TRBV10-1A0A0K0K1A3 114 aa3.78□□□□□ -1.8
CSDE1-202ENST00000339438 LINC00575Q6W349 94 aa3.78□□□□□ -1.8
CSDE1-202ENST00000339438 PRYO14603 147 aa3.78□□□□□ -1.8
CSDE1-202ENST00000339438 C4orf3Q8WVX3 66 aa3.78□□□□□ -1.8
CSDE1-202ENST00000339438 LINC00158P58513 81 aa3.77□□□□□ -1.81
CSDE1-202ENST00000339438 BPY2O14599 106 aa3.77□□□□□ -1.81
CSDE1-202ENST00000339438 IGKV4-1P06312 121 aa3.77□□□□□ -1.81
CSDE1-202ENST00000339438 ZNF561-AS1K7EIQ3 104 aa3.77□□□□□ -1.81
CSDE1-202ENST00000339438 ZCCHC13Q8WW36 166 aaKnown RBP3.77□□□□□ -1.81
CSDE1-202ENST00000339438 TENM2Q9NT68 2774 aa3.77□□□□□ -1.81
CSDE1-202ENST00000339438 DGAT2L7PQ6IED9 249 aa3.76□□□□□ -1.81
CSDE1-202ENST00000339438 C11orf68Q9H3H3 251 aaKnown RBP3.76□□□□□ -1.81
CSDE1-202ENST00000339438 IGLV4-60A0A075B6I1 120 aa3.76□□□□□ -1.81
CSDE1-202ENST00000339438 HAMPP81172 84 aa3.76□□□□□ -1.81
CSDE1-202ENST00000339438 PRB2P02812 416 aaPredicted RBP3.75□□□□□ -1.81
CSDE1-202ENST00000339438 C4orf48Q5BLP8 95 aa3.75□□□□□ -1.81
CSDE1-202ENST00000339438 MUC7Q8TAX7 377 aa3.75□□□□□ -1.81
CSDE1-202ENST00000339438 HIGD2AQ9BW72 106 aa3.75□□□□□ -1.81
CSDE1-202ENST00000339438 DEFB114Q30KQ6 69 aa3.75□□□□□ -1.81
CSDE1-202ENST00000339438 C1orf64Q8NEQ6 169 aa3.75□□□□□ -1.81
CSDE1-202ENST00000339438 SCXQ7RTU7 201 aa3.75□□□□□ -1.81
CSDE1-202ENST00000339438 CELA1Q9UNI1 258 aa3.75□□□□□ -1.81
CSDE1-202ENST00000339438 TRAV22A0A0B4J277 110 aa3.74□□□□□ -1.81
CSDE1-202ENST00000339438 FUSP35637 526 aaKnown RBP eCLIP3.74□□□□□ -1.812e-9■□□□□ 9
CSDE1-202ENST00000339438 LAMTOR3Q9UHA4 124 aa3.74□□□□□ -1.81
CSDE1-202ENST00000339438 C6orf99Q4VX62 202 aa3.74□□□□□ -1.81
CSDE1-202ENST00000339438 STHQ8IWL8 128 aa3.74□□□□□ -1.81
CSDE1-202ENST00000339438 LINC00588Q9Y4M8 146 aa3.74□□□□□ -1.81
CSDE1-202ENST00000339438 KIAA0087Q14695 138 aa3.73□□□□□ -1.81
CSDE1-202ENST00000339438 Q8N9L7 120 aa3.73□□□□□ -1.81
CSDE1-202ENST00000339438 MAP6D1Q9H9H5 199 aa3.73□□□□□ -1.81
CSDE1-202ENST00000339438 TOMM7Q9P0U1 55 aa3.73□□□□□ -1.81
CSDE1-202ENST00000339438 SYCNQ0VAF6 134 aa3.73□□□□□ -1.81
CSDE1-202ENST00000339438 DEFB4AO15263 64 aa3.73□□□□□ -1.81
CSDE1-202ENST00000339438 RBM12B-AS1Q9P1G2 102 aa3.73□□□□□ -1.81
CSDE1-202ENST00000339438 IGHV4-30-4P0DP06 118 aa3.73□□□□□ -1.81
CSDE1-202ENST00000339438 ODF3L2Q3SX64 289 aa3.73□□□□□ -1.81
CSDE1-202ENST00000339438 Q5VV11 94 aa3.73□□□□□ -1.81
CSDE1-202ENST00000339438 LRCOL1A6NCL2 159 aa3.72□□□□□ -1.81
CSDE1-202ENST00000339438 IGLV6-57P01721 117 aa3.72□□□□□ -1.81
CSDE1-202ENST00000339438 IGHV4-28A0A0C4DH34 117 aa3.72□□□□□ -1.81
CSDE1-202ENST00000339438 LOC100131303A0A0U1RQF7 123 aa3.72□□□□□ -1.81
CSDE1-202ENST00000339438 C10orf25Q5T742 122 aa3.72□□□□□ -1.81
CSDE1-202ENST00000339438 Q8IZM0 81 aa3.72□□□□□ -1.81
CSDE1-202ENST00000339438 MYCBP2O75592 4640 aa3.71□□□□□ -1.81
CSDE1-202ENST00000339438 PDE6GP18545 87 aa3.71□□□□□ -1.82
CSDE1-202ENST00000339438 CYP4F30PQ9H0H9 118 aa3.71□□□□□ -1.82
CSDE1-202ENST00000339438 PSPHP1O15172 72 aa3.71□□□□□ -1.82
CSDE1-202ENST00000339438 PSCAO43653 123 aa3.71□□□□□ -1.82
CSDE1-202ENST00000339438 LINC00959A0A1B0GUT2 108 aa3.71□□□□□ -1.82
CSDE1-202ENST00000339438 C16orf90A8MZG2 172 aa3.7□□□□□ -1.82
CSDE1-202ENST00000339438 GIG44P09565 113 aaPredicted RBP3.7□□□□□ -1.82
CSDE1-202ENST00000339438 DAD1P61803 113 aa3.7□□□□□ -1.82
CSDE1-202ENST00000339438 Q6ZQY7 126 aa3.7□□□□□ -1.82
CSDE1-202ENST00000339438 KTN1-AS1Q86SY8 53 aa3.7□□□□□ -1.82
CSDE1-202ENST00000339438 COX17Q14061 63 aa3.7□□□□□ -1.82
CSDE1-202ENST00000339438 A6NN06 94 aa3.69□□□□□ -1.82
CSDE1-202ENST00000339438 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.69□□□□□ -1.82
CSDE1-202ENST00000339438 TRGV2A0A075B6R0 118 aa3.69□□□□□ -1.82
CSDE1-202ENST00000339438 A8MUN3 132 aa3.69□□□□□ -1.82
CSDE1-202ENST00000339438 M0R378 163 aa3.69□□□□□ -1.82
CSDE1-202ENST00000339438 IGLV1-51P01701 117 aa3.69□□□□□ -1.82
CSDE1-202ENST00000339438 DEFB130BP0DP73 79 aa3.69□□□□□ -1.82
CSDE1-202ENST00000339438 DEFB130AP0DP74 79 aa3.69□□□□□ -1.82
CSDE1-202ENST00000339438 DEFB135Q30KP9 77 aa3.69□□□□□ -1.82
CSDE1-202ENST00000339438 C9orf116Q5BN46 136 aaPredicted RBP3.69□□□□□ -1.82
CSDE1-202ENST00000339438 C11orf45Q8TAV5 145 aa3.69□□□□□ -1.82
CSDE1-202ENST00000339438 TRGV1A0A0A0MS02 117 aa3.69□□□□□ -1.82
CSDE1-202ENST00000339438 TRBV6-8A0A0A6YYG3 113 aa3.68□□□□□ -1.82
CSDE1-202ENST00000339438 HTN3P15516 51 aa3.68□□□□□ -1.82
CSDE1-202ENST00000339438 LCA10Q71F78 164 aa3.68□□□□□ -1.82
CSDE1-202ENST00000339438 PHF5AQ7RTV0 110 aaKnown RBP3.68□□□□□ -1.82
CSDE1-202ENST00000339438 INSP01308 110 aa3.68□□□□□ -1.82
CSDE1-202ENST00000339438 NOP10Q9NPE3 64 aaKnown RBP3.68□□□□□ -1.82
CSDE1-202ENST00000339438 UBE2L6O14933 153 aa3.67□□□□□ -1.82
CSDE1-202ENST00000339438 COX7BP24311 80 aa3.67□□□□□ -1.82
CSDE1-202ENST00000339438 TRGV4A0A0C4DH28 118 aa3.67□□□□□ -1.82
CSDE1-202ENST00000339438 SMIM29Q86T20 159 aa3.67□□□□□ -1.82
CSDE1-202ENST00000339438 IGKV3OR2-268A0A0C4DH90 116 aa3.67□□□□□ -1.82
CSDE1-202ENST00000339438 KIAA1109Q2LD37 5005 aa3.67□□□□□ -1.82
CSDE1-202ENST00000339438 A0A096LPF7 62 aa3.67□□□□□ -1.82
CSDE1-202ENST00000339438 K7EIL1 84 aa3.67□□□□□ -1.82
CSDE1-202ENST00000339438 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.66□□□□□ -1.82
CSDE1-202ENST00000339438 CSNK1G2-AS1Q8NCQ2 148 aa3.66□□□□□ -1.82
CSDE1-202ENST00000339438 H3BQ85 93 aa3.66□□□□□ -1.82
CSDE1-202ENST00000339438 FAM30AQ9NZY2 134 aa3.66□□□□□ -1.82
CSDE1-202ENST00000339438 KLK12Q9UKR0 248 aa3.66□□□□□ -1.82
CSDE1-202ENST00000339438 ELOF1P60002 83 aaKnown RBP3.66□□□□□ -1.82
CSDE1-202ENST00000339438 Q8N9P0 234 aaPredicted RBP3.66□□□□□ -1.82
CSDE1-202ENST00000339438 A0A1B0GUV1 79 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 90.9 ms