RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 HIST2H2BEQ16778 126 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.11□□□□□ -0.63
LIME1-201ENST00000309546 ADAMTSL4-AS1Q5T5F5 129 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 HIST1H2BHQ93079 126 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 HIST1H2BNQ99877 126 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 HIST1H2BMQ99879 126 aa11.11□□□□□ -0.63
LIME1-201ENST00000309546 EIF4EBP3O60516 100 aaPredicted RBP11.1□□□□□ -0.63
LIME1-201ENST00000309546 SYS1-DBNDD2H3BUS1 97 aa11.09□□□□□ -0.63
LIME1-201ENST00000309546 FP248Q71RG6 208 aaPredicted RBP11.09□□□□□ -0.63
LIME1-201ENST00000309546 SPINK1P00995 79 aa11.08□□□□□ -0.64
LIME1-201ENST00000309546 ZNF73O43830 326 aaPredicted RBP11.07□□□□□ -0.64
LIME1-201ENST00000309546 JOSD1Q15040 202 aaPredicted RBP11.07□□□□□ -0.64
LIME1-201ENST00000309546 C9orf153Q5TBE3 101 aa11.04□□□□□ -0.64
LIME1-201ENST00000309546 LINC01545Q5VT33 79 aa11.04□□□□□ -0.64
LIME1-201ENST00000309546 SSBP3-AS1Q7Z2R9 100 aa11.04□□□□□ -0.64
LIME1-201ENST00000309546 LINC00308Q8TCZ7 52 aa11.03□□□□□ -0.64
LIME1-201ENST00000309546 FAT4Q6V0I7 4981 aa11.03□□□□□ -0.64
LIME1-201ENST00000309546 ZNF815PA8K554 130 aa11.02□□□□□ -0.65
LIME1-201ENST00000309546 PET117Q6UWS5 81 aa11.02□□□□□ -0.65
LIME1-201ENST00000309546 OR13C6PQ8NH95 151 aa11.02□□□□□ -0.65
LIME1-201ENST00000309546 LITAFQ99732 161 aa11.02□□□□□ -0.65
LIME1-201ENST00000309546 SPANXCQ9NY87 97 aa11.02□□□□□ -0.65
LIME1-201ENST00000309546 HINT1P49773 126 aaPredicted RBP11.01□□□□□ -0.65
LIME1-201ENST00000309546 KRTAP13-3Q3SY46 172 aa11.01□□□□□ -0.65
LIME1-201ENST00000309546 COA6Q5JTJ3 125 aaKnown RBP11.01□□□□□ -0.65
LIME1-201ENST00000309546 ST20-AS1Q8NBB2 130 aa11.01□□□□□ -0.65
LIME1-201ENST00000309546 CBY1Q9Y3M2 126 aa11.01□□□□□ -0.65
LIME1-201ENST00000309546 TTTY13Q9BZ97 58 aa11□□□□□ -0.65
LIME1-201ENST00000309546 TIMM17BO60830 172 aa10.99□□□□□ -0.65
LIME1-201ENST00000309546 RPS29P62273 56 aaKnown RBP10.98□□□□□ -0.65
LIME1-201ENST00000309546 Q8N377 158 aa10.98□□□□□ -0.65
LIME1-201ENST00000309546 C3orf79P0CE67 100 aa10.97□□□□□ -0.65
LIME1-201ENST00000309546 KRTDAPP60985 99 aa10.96□□□□□ -0.65
LIME1-201ENST00000309546 SLC25A20O43772 301 aa10.95□□□□□ -0.66
LIME1-201ENST00000309546 SPANXDQ9BXN6 97 aa10.95□□□□□ -0.66
LIME1-201ENST00000309546 S100A6P06703 90 aa10.93□□□□□ -0.66
LIME1-201ENST00000309546 C5orf52A6NGY3 159 aa10.92□□□□□ -0.66
LIME1-201ENST00000309546 LCE2AQ5TA79 106 aaPredicted RBP10.92□□□□□ -0.66
LIME1-201ENST00000309546 DHRS4-AS1Q9P1J3 65 aa10.92□□□□□ -0.66
LIME1-201ENST00000309546 SCGB1D4Q6XE38 83 aa10.91□□□□□ -0.66
LIME1-201ENST00000309546 COX7BP24311 80 aa10.9□□□□□ -0.66
LIME1-201ENST00000309546 C6orf99Q4VX62 202 aa10.9□□□□□ -0.66
LIME1-201ENST00000309546 LINC00518Q8N0U6 118 aa10.9□□□□□ -0.66
LIME1-201ENST00000309546 C20orf202A1L168 122 aa10.89□□□□□ -0.67
LIME1-201ENST00000309546 ASB16-AS1Q495Z4 193 aa10.89□□□□□ -0.67
LIME1-201ENST00000309546 SLC25A34Q6PIV7 304 aa10.89□□□□□ -0.67
LIME1-201ENST00000309546 SPRR1BP22528 89 aa10.88□□□□□ -0.67
LIME1-201ENST00000309546 ELOF1P60002 83 aaKnown RBP10.88□□□□□ -0.67
LIME1-201ENST00000309546 HRCT1Q6UXD1 115 aa10.88□□□□□ -0.67
LIME1-201ENST00000309546 ANKRD39Q53RE8 183 aa10.87□□□□□ -0.67
LIME1-201ENST00000309546 ATOH7Q8N100 152 aa10.87□□□□□ -0.67
LIME1-201ENST00000309546 SEC61BP60468 96 aaKnown RBP10.86□□□□□ -0.67
LIME1-201ENST00000309546 HIST3H2BBQ8N257 126 aa10.86□□□□□ -0.67
LIME1-201ENST00000309546 LAMTOR3Q9UHA4 124 aa10.86□□□□□ -0.67
LIME1-201ENST00000309546 S100A2P29034 98 aa10.85□□□□□ -0.67
LIME1-201ENST00000309546 SNRPEP62304 92 aaKnown RBP10.85□□□□□ -0.67
LIME1-201ENST00000309546 TAL2Q16559 108 aa10.84□□□□□ -0.67
LIME1-201ENST00000309546 DEFB105AQ8NG35 78 aa10.84□□□□□ -0.67
LIME1-201ENST00000309546 COPS9Q8WXC6 57 aa10.84□□□□□ -0.67
LIME1-201ENST00000309546 KRTAP9-2Q9BYQ4 174 aa10.84□□□□□ -0.67
LIME1-201ENST00000309546 Q1RN00 199 aa10.83□□□□□ -0.68
LIME1-201ENST00000309546 HIST1H2BLQ99880 126 aa10.82□□□□□ -0.68
LIME1-201ENST00000309546 LIMD2Q9BT23 127 aa10.82□□□□□ -0.68
LIME1-201ENST00000309546 A6NDN8 102 aa10.81□□□□□ -0.68
LIME1-201ENST00000309546 IFITM1P13164 125 aa10.81□□□□□ -0.68
LIME1-201ENST00000309546 PCP2Q8IVA1 136 aa10.81□□□□□ -0.68
LIME1-201ENST00000309546 XP32Q5T750 250 aa10.8□□□□□ -0.68
LIME1-201ENST00000309546 KRTAP4-1Q9BYQ7 146 aa10.8□□□□□ -0.68
LIME1-201ENST00000309546 MUSTN1Q8IVN3 82 aa10.79□□□□□ -0.68
LIME1-201ENST00000309546 TRBV7-6A0A0J9YX20 115 aa10.78□□□□□ -0.68
LIME1-201ENST00000309546 TEX49A0A1B0GTD5 131 aa10.78□□□□□ -0.68
LIME1-201ENST00000309546 A0A1B0GWB2 263 aa10.78□□□□□ -0.68
LIME1-201ENST00000309546 Q6ZVH6 145 aa10.78□□□□□ -0.68
LIME1-201ENST00000309546 AKR1D1P51857 326 aa10.76□□□□□ -0.69
LIME1-201ENST00000309546 PRO1933Q9H354 126 aa10.76□□□□□ -0.69
LIME1-201ENST00000309546 TMA7Q9Y2S6 64 aaKnown RBP10.75□□□□□ -0.69
LIME1-201ENST00000309546 H7C2G1 150 aa10.73□□□□□ -0.69
LIME1-201ENST00000309546 TRAV13-2A0A0B4J235 113 aa10.72□□□□□ -0.69
LIME1-201ENST00000309546 LINC01547P58512 204 aaPredicted RBP10.72□□□□□ -0.69
LIME1-201ENST00000309546 SMIM29Q86T20 159 aa10.72□□□□□ -0.69
LIME1-201ENST00000309546 C9orf92A6NGG3 77 aa10.71□□□□□ -0.69
LIME1-201ENST00000309546 CD164Q04900 197 aa10.71□□□□□ -0.69
LIME1-201ENST00000309546 IGLV5-48A0A075B6I7 105 aa10.7□□□□□ -0.7
LIME1-201ENST00000309546 SMIM11BQ8TCY0 68 aa10.7□□□□□ -0.7
LIME1-201ENST00000309546 A4D1N5 150 aa10.69□□□□□ -0.7
LIME1-201ENST00000309546 A0A0G2JQZ4 141 aa10.68□□□□□ -0.7
LIME1-201ENST00000309546 NHP2Q9NX24 153 aaKnown RBP10.68□□□□□ -0.7
LIME1-201ENST00000309546 HSBP1L1C9JCN9 74 aa10.66□□□□□ -0.7
LIME1-201ENST00000309546 SCGB1D1O95968 90 aa10.64□□□□□ -0.71
LIME1-201ENST00000309546 PCOTHQ58A44 107 aa10.64□□□□□ -0.71
LIME1-201ENST00000309546 VAMP3Q15836 100 aa10.61□□□□□ -0.71
LIME1-201ENST00000309546 Q5XG85 94 aa10.61□□□□□ -0.71
LIME1-201ENST00000309546 F8WEM9 126 aa10.6□□□□□ -0.71
LIME1-201ENST00000309546 C1orf195Q5TG92 126 aa10.6□□□□□ -0.71
LIME1-201ENST00000309546 IGLV8-61A0A075B6I0 122 aa10.59□□□□□ -0.71
LIME1-201ENST00000309546 KRTAP9-6A0A140TA67 174 aa10.58□□□□□ -0.72
LIME1-201ENST00000309546 LINC00575Q6W349 94 aa10.58□□□□□ -0.72
LIME1-201ENST00000309546 C12orf57Q99622 126 aa10.57□□□□□ -0.72
LIME1-201ENST00000309546 Q6ZQY7 126 aa10.56□□□□□ -0.72
LIME1-201ENST00000309546 hADV29S1A0JD25 119 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms