RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SSBP3-AS1Q7Z2R9 100 aa11.45□□□□□ -0.58
SYNPO-201ENST00000307662 TYMSOSQ8TAI1 123 aa11.43□□□□□ -0.58
SYNPO-201ENST00000307662 DNAH12Q6ZR08 3092 aa11.42□□□□□ -0.58
SYNPO-201ENST00000307662 C15orf56Q8N910 161 aa11.42□□□□□ -0.58
SYNPO-201ENST00000307662 FASNP49327 2511 aaKnown RBP11.42□□□□□ -0.58
SYNPO-201ENST00000307662 KRTAP24-1Q3LI83 254 aa11.41□□□□□ -0.58
SYNPO-201ENST00000307662 LCA10Q71F78 164 aa11.41□□□□□ -0.58
SYNPO-201ENST00000307662 OBSCN-AS1Q96MR7 158 aa11.41□□□□□ -0.58
SYNPO-201ENST00000307662 A0A1B0GVX0 72 aa11.4□□□□□ -0.59
SYNPO-201ENST00000307662 SPANXA2-OT1Q8N9U9 137 aa11.38□□□□□ -0.59
SYNPO-201ENST00000307662 WIPF1O43516 503 aa11.37□□□□□ -0.59
SYNPO-201ENST00000307662 A0A096LNT2 108 aa11.36□□□□□ -0.59
SYNPO-201ENST00000307662 PLA2G2DQ9UNK4 145 aa11.36□□□□□ -0.59
SYNPO-201ENST00000307662 A0A0G2JQZ4 141 aa11.35□□□□□ -0.59
SYNPO-201ENST00000307662 A0A1W2PNN7 141 aa11.35□□□□□ -0.59
SYNPO-201ENST00000307662 DSCR10P59022 87 aa11.35□□□□□ -0.59
SYNPO-201ENST00000307662 GIG44P09565 113 aaPredicted RBP11.35□□□□□ -0.59
SYNPO-201ENST00000307662 LINC00612Q8N6U2 182 aa11.34□□□□□ -0.59
SYNPO-201ENST00000307662 A0A1W2PNM2 257 aa11.33□□□□□ -0.6
SYNPO-201ENST00000307662 TLX1NBP0CAT3 122 aa11.33□□□□□ -0.6
SYNPO-201ENST00000307662 PRRC2CQ9Y520 2896 aaKnown RBP11.33□□□□□ -0.6
SYNPO-201ENST00000307662 CDC42SE1Q9NRR8 79 aa11.32□□□□□ -0.6
SYNPO-201ENST00000307662 EPG5Q9HCE0 2579 aa11.29□□□□□ -0.6
SYNPO-201ENST00000307662 Q1T7F1 81 aa11.29□□□□□ -0.6
SYNPO-201ENST00000307662 C19orf73Q9NVV2 129 aa11.28□□□□□ -0.6
SYNPO-201ENST00000307662 OCR1Q9BZK8 76 aa11.28□□□□□ -0.6
SYNPO-201ENST00000307662 CRIPTQ9P021 101 aa11.27□□□□□ -0.61
SYNPO-201ENST00000307662 ZNF575Q86XF7 245 aa11.25□□□□□ -0.61
SYNPO-201ENST00000307662 IGLV5-48A0A075B6I7 105 aa11.25□□□□□ -0.61
SYNPO-201ENST00000307662 CEP350Q5VT06 3117 aa11.24□□□□□ -0.61
SYNPO-201ENST00000307662 PLA2G1BP04054 148 aaKnown RBP11.23□□□□□ -0.61
SYNPO-201ENST00000307662 ZNF861PO60384 105 aa11.23□□□□□ -0.61
SYNPO-201ENST00000307662 APLNQ9ULZ1 77 aa11.22□□□□□ -0.61
SYNPO-201ENST00000307662 Q5XG85 94 aa11.17□□□□□ -0.62
SYNPO-201ENST00000307662 FAM104AQ969W3 186 aa11.16□□□□□ -0.62
SYNPO-201ENST00000307662 F8P00451 2351 aa11.16□□□□□ -0.62
SYNPO-201ENST00000307662 KRTAP10-3P60369 221 aa11.15□□□□□ -0.62
SYNPO-201ENST00000307662 KRTAP10-11P60412 298 aa11.15□□□□□ -0.63
SYNPO-201ENST00000307662 C9orf163Q8N9P6 203 aa11.14□□□□□ -0.63
SYNPO-201ENST00000307662 IGLV5-37A0A075B6J1 123 aa11.13□□□□□ -0.63
SYNPO-201ENST00000307662 SPRR4Q96PI1 79 aa11.13□□□□□ -0.63
SYNPO-201ENST00000307662 ANAPC11Q9NYG5 84 aa11.11□□□□□ -0.63
SYNPO-201ENST00000307662 LINC00304Q8N9R0 145 aa11.09□□□□□ -0.63
SYNPO-201ENST00000307662 Q75L30 129 aa11.08□□□□□ -0.64
SYNPO-201ENST00000307662 K7EIL1 84 aa11.08□□□□□ -0.64
SYNPO-201ENST00000307662 UTRNP46939 3433 aa11.08□□□□□ -0.64
SYNPO-201ENST00000307662 CASC10Q5T4H9 136 aa11.08□□□□□ -0.64
SYNPO-201ENST00000307662 PRR26Q8N8Z3 221 aa11.08□□□□□ -0.64
SYNPO-201ENST00000307662 CNBPP62633 177 aaKnown RBP11.07□□□□□ -0.64
SYNPO-201ENST00000307662 IGLV7-46A0A075B6I9 117 aa11.07□□□□□ -0.64
SYNPO-201ENST00000307662 KRTAP1-3Q8IUG1 177 aa11.07□□□□□ -0.64
SYNPO-201ENST00000307662 CYSTM1Q9H1C7 97 aa11.06□□□□□ -0.64
SYNPO-201ENST00000307662 RBM12B-AS1Q9P1G2 102 aa11.06□□□□□ -0.64
SYNPO-201ENST00000307662 CHD7Q9P2D1 2997 aa11.06□□□□□ -0.64
SYNPO-201ENST00000307662 FAM229BQ4G0N7 80 aa11.05□□□□□ -0.64
SYNPO-201ENST00000307662 C9orf92A6NGG3 77 aa11.05□□□□□ -0.64
SYNPO-201ENST00000307662 A0A087WTM6 91 aa11.05□□□□□ -0.64
SYNPO-201ENST00000307662 FP248Q71RG6 208 aaPredicted RBP11.04□□□□□ -0.64
SYNPO-201ENST00000307662 IGLV7-43P04211 117 aa11.04□□□□□ -0.64
SYNPO-201ENST00000307662 PSORS1C2Q9UIG4 136 aa11.04□□□□□ -0.64
SYNPO-201ENST00000307662 Q8N1X5 172 aa11.02□□□□□ -0.65
SYNPO-201ENST00000307662 KRTAP1-1Q07627 177 aa10.99□□□□□ -0.65
SYNPO-201ENST00000307662 HECTD1Q9ULT8 2610 aa10.99□□□□□ -0.65
SYNPO-201ENST00000307662 WWC2-AS2Q96NR7 200 aa10.99□□□□□ -0.65
SYNPO-201ENST00000307662 FLNBO75369 2602 aaKnown RBP10.98□□□□□ -0.65
SYNPO-201ENST00000307662 Q8N9P0 234 aaPredicted RBP10.98□□□□□ -0.65
SYNPO-201ENST00000307662 A0A0D9SG42 100 aa10.96□□□□□ -0.65
SYNPO-201ENST00000307662 LINC01558Q9Y6Z2 57 aa10.96□□□□□ -0.65
SYNPO-201ENST00000307662 CHD9Q3L8U1 2897 aa10.91□□□□□ -0.66
SYNPO-201ENST00000307662 LINC01554Q52M75 96 aa10.9□□□□□ -0.66
SYNPO-201ENST00000307662 USP24Q9UPU5 2620 aa10.9□□□□□ -0.66
SYNPO-201ENST00000307662 HRES1P13985 223 aa10.9□□□□□ -0.66
SYNPO-201ENST00000307662 C5orf42Q9H799 3197 aa10.89□□□□□ -0.67
SYNPO-201ENST00000307662 Q5VV11 94 aa10.88□□□□□ -0.67
SYNPO-201ENST00000307662 CR1P17927 2039 aa10.87□□□□□ -0.67
SYNPO-201ENST00000307662 MMP24-AS1A0A0U1RRL7 71 aa10.87□□□□□ -0.67
SYNPO-201ENST00000307662 MGAM2Q2M2H8 2515 aa10.87□□□□□ -0.67
SYNPO-201ENST00000307662 Q8NDZ9 215 aa10.86□□□□□ -0.67
SYNPO-201ENST00000307662 PCNTO95613 3336 aa10.85□□□□□ -0.67
SYNPO-201ENST00000307662 FLNAP21333 2647 aaKnown RBP10.85□□□□□ -0.67
SYNPO-201ENST00000307662 A0A1B0GU33 70 aa10.84□□□□□ -0.67
SYNPO-201ENST00000307662 OXTP01178 125 aa10.84□□□□□ -0.67
SYNPO-201ENST00000307662 BPTFQ12830 3046 aa10.83□□□□□ -0.68
SYNPO-201ENST00000307662 PRAC1Q96KF2 57 aa10.82□□□□□ -0.68
SYNPO-201ENST00000307662 COX6B2Q6YFQ2 88 aa10.81□□□□□ -0.68
SYNPO-201ENST00000307662 SPRR1AP35321 89 aa10.79□□□□□ -0.68
SYNPO-201ENST00000307662 HTTP42858 3142 aa10.79□□□□□ -0.68
SYNPO-201ENST00000307662 ITPR3Q14573 2671 aa10.79□□□□□ -0.68
SYNPO-201ENST00000307662 LUZP6Q538Z0 58 aa10.78□□□□□ -0.68
SYNPO-201ENST00000307662 SMR3BP02814 79 aaPredicted RBP10.76□□□□□ -0.69
SYNPO-201ENST00000307662 H3BS24 57 aa10.76□□□□□ -0.69
SYNPO-201ENST00000307662 SPINK7P58062 85 aa10.74□□□□□ -0.69
SYNPO-201ENST00000307662 LINC00472Q9H8W2 130 aa10.71□□□□□ -0.69
SYNPO-201ENST00000307662 ATRQ13535 2644 aa10.71□□□□□ -0.7
SYNPO-201ENST00000307662 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.7□□□□□ -0.7
SYNPO-201ENST00000307662 J3QL48 77 aa10.69□□□□□ -0.7
SYNPO-201ENST00000307662 CSAG1Q6PB30 78 aa10.68□□□□□ -0.7
SYNPO-201ENST00000307662 TRANK1O15050 2925 aa10.67□□□□□ -0.7
SYNPO-201ENST00000307662 HELZ2Q9BYK8 2649 aaKnown RBP10.67□□□□□ -0.7
SYNPO-201ENST00000307662 SPRR1BP22528 89 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms