RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 C16orf90A8MZG2 172 aa10.63□□□□□ -0.71
CCDC40-201ENST00000269318 FAM19A5Q7Z5A7 132 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-201ENST00000269318 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.63□□□□□ -0.71
CCDC40-201ENST00000269318 SCGB1A1P11684 91 aa10.63□□□□□ -0.71
CCDC40-201ENST00000269318 GAGE2AQ6NT46 116 aa10.63□□□□□ -0.71
CCDC40-201ENST00000269318 A0A1B0GV72 72 aa10.62□□□□□ -0.71
CCDC40-201ENST00000269318 RPL37AP8A6NKH3 93 aa10.62□□□□□ -0.71
CCDC40-201ENST00000269318 SDIM1Q6ZPB5 146 aa10.62□□□□□ -0.71
CCDC40-201ENST00000269318 MRPL55Q7Z7F7 128 aaKnown RBP10.62□□□□□ -0.71
CCDC40-201ENST00000269318 KRTAP4-16G5E9R7 235 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-201ENST00000269318 H3BQ85 93 aa10.61□□□□□ -0.71
CCDC40-201ENST00000269318 PRYO14603 147 aa10.61□□□□□ -0.71
CCDC40-201ENST00000269318 SPRR1AP35321 89 aa10.61□□□□□ -0.71
CCDC40-201ENST00000269318 M0R2N4 97 aa10.59□□□□□ -0.71
CCDC40-201ENST00000269318 SMCR5Q8TEV8 140 aa10.59□□□□□ -0.71
CCDC40-201ENST00000269318 IGKV2-24A0A0C4DH68 120 aa10.58□□□□□ -0.72
CCDC40-201ENST00000269318 C9orf163Q8N9P6 203 aa10.57□□□□□ -0.72
CCDC40-201ENST00000269318 A0A1W2PNN7 141 aa10.57□□□□□ -0.72
CCDC40-201ENST00000269318 B5MCH6 92 aa10.57□□□□□ -0.72
CCDC40-201ENST00000269318 CCKP06307 115 aa10.57□□□□□ -0.72
CCDC40-201ENST00000269318 Q6ZR54 194 aa10.56□□□□□ -0.72
CCDC40-201ENST00000269318 Q6ZRX8 168 aa10.56□□□□□ -0.72
CCDC40-201ENST00000269318 GHRHP01286 108 aa10.56□□□□□ -0.72
CCDC40-201ENST00000269318 LAMTOR3Q9UHA4 124 aa10.56□□□□□ -0.72
CCDC40-201ENST00000269318 RBM3P98179 157 aaKnown RBP10.55□□□□□ -0.72
CCDC40-201ENST00000269318 C21orf62-AS1Q17RA5 79 aa10.55□□□□□ -0.72
CCDC40-201ENST00000269318 Q9BRP9 147 aa10.54□□□□□ -0.72
CCDC40-201ENST00000269318 LOC110117498A0A087WWA1 95 aa10.53□□□□□ -0.72
CCDC40-201ENST00000269318 CHTF8P0CG12 524 aa10.53□□□□□ -0.72
CCDC40-201ENST00000269318 LINC00643Q86TS7 51 aa10.53□□□□□ -0.72
CCDC40-201ENST00000269318 KMT2AQ03164 3969 aa10.53□□□□□ -0.72
CCDC40-201ENST00000269318 ETDCA0A1B0GVM5 59 aa10.52□□□□□ -0.72
CCDC40-201ENST00000269318 LINC00846Q9NV44 126 aa10.52□□□□□ -0.72
CCDC40-201ENST00000269318 DHRS4-AS1Q9P1J3 65 aa10.52□□□□□ -0.72
CCDC40-201ENST00000269318 Q6ZQT0 140 aa10.52□□□□□ -0.73
CCDC40-201ENST00000269318 A0A087WTM6 91 aa10.51□□□□□ -0.73
CCDC40-201ENST00000269318 Q6Q795 121 aa10.51□□□□□ -0.73
CCDC40-201ENST00000269318 REG3GQ6UW15 175 aa10.51□□□□□ -0.73
CCDC40-201ENST00000269318 PKIGQ9Y2B9 76 aa10.51□□□□□ -0.73
CCDC40-201ENST00000269318 TRBV7-7A0A0K0K1E9 115 aa10.5□□□□□ -0.73
CCDC40-201ENST00000269318 NDUFV3P56181 108 aaKnown RBP10.5□□□□□ -0.73
CCDC40-201ENST00000269318 DNAH2Q9P225 4427 aa10.49□□□□□ -0.73
CCDC40-201ENST00000269318 LINC01547P58512 204 aaPredicted RBP10.48□□□□□ -0.73
CCDC40-201ENST00000269318 DSCR8Q96T75 97 aa10.48□□□□□ -0.73
CCDC40-201ENST00000269318 TRBV7-4A0A0J9YYF1 115 aa10.47□□□□□ -0.73
CCDC40-201ENST00000269318 Q8N377 158 aa10.47□□□□□ -0.73
CCDC40-201ENST00000269318 PANO1I0J062 215 aa10.46□□□□□ -0.74
CCDC40-201ENST00000269318 PDE6GP18545 87 aa10.46□□□□□ -0.74
CCDC40-201ENST00000269318 LINC00474Q9P2X8 69 aa10.46□□□□□ -0.74
CCDC40-201ENST00000269318 PHF5AQ7RTV0 110 aaKnown RBP10.45□□□□□ -0.74
CCDC40-201ENST00000269318 ERC2-IT1O76042 136 aa10.45□□□□□ -0.74
CCDC40-201ENST00000269318 WWC2-AS2Q96NR7 200 aa10.45□□□□□ -0.74
CCDC40-201ENST00000269318 IGLV5-48A0A075B6I7 105 aa10.44□□□□□ -0.74
CCDC40-201ENST00000269318 KRTAP11-1Q8IUC1 163 aa10.44□□□□□ -0.74
CCDC40-201ENST00000269318 DEFB105AQ8NG35 78 aa10.44□□□□□ -0.74
CCDC40-201ENST00000269318 IMUPQ9GZP8 106 aa10.44□□□□□ -0.74
CCDC40-201ENST00000269318 ST20-AS1Q8NBB2 130 aa10.43□□□□□ -0.74
CCDC40-201ENST00000269318 LY6G6CO95867 125 aa10.43□□□□□ -0.74
CCDC40-201ENST00000269318 UBE2BP63146 152 aa10.43□□□□□ -0.74
CCDC40-201ENST00000269318 HECTD4Q9Y4D8 3996 aa10.43□□□□□ -0.74
CCDC40-201ENST00000269318 DNAH6Q9C0G6 4158 aa10.42□□□□□ -0.74
CCDC40-201ENST00000269318 C1orf134Q5TEV5 83 aa10.41□□□□□ -0.74
CCDC40-201ENST00000269318 Q6JHZ5 121 aa10.41□□□□□ -0.74
CCDC40-201ENST00000269318 SPACA4Q8TDM5 124 aa10.41□□□□□ -0.74
CCDC40-201ENST00000269318 LINC00476Q8WZB0 136 aa10.41□□□□□ -0.74
CCDC40-201ENST00000269318 TGP01266 2768 aa10.41□□□□□ -0.74
CCDC40-201ENST00000269318 EPM2AB3EWF7 344 aa10.41□□□□□ -0.74
CCDC40-201ENST00000269318 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.41□□□□□ -0.74
CCDC40-201ENST00000269318 DNAH17Q9UFH2 4485 aa10.4□□□□□ -0.75
CCDC40-201ENST00000269318 FAM19A1Q7Z5A9 133 aa10.39□□□□□ -0.75
CCDC40-201ENST00000269318 RTL8CO15255 209 aa10.39□□□□□ -0.75
CCDC40-201ENST00000269318 FUSP35637 526 aaKnown RBP eCLIP10.39□□□□□ -0.75
CCDC40-201ENST00000269318 PRLHP81277 87 aa10.39□□□□□ -0.75
CCDC40-201ENST00000269318 C3orf22Q8N5N4 141 aa10.37□□□□□ -0.75
CCDC40-201ENST00000269318 TNP2Q05952 138 aa10.37□□□□□ -0.75
CCDC40-201ENST00000269318 UBL5Q9BZL1 73 aa10.36□□□□□ -0.75
CCDC40-201ENST00000269318 ALMS1Q8TCU4 4167 aa10.36□□□□□ -0.75
CCDC40-201ENST00000269318 IGKV3D-7A0A0C4DH55 119 aa10.35□□□□□ -0.75
CCDC40-201ENST00000269318 H0Y9J4 135 aa10.35□□□□□ -0.75
CCDC40-201ENST00000269318 DPH3Q96FX2 82 aa10.34□□□□□ -0.75
CCDC40-201ENST00000269318 SMIM29Q86T20 159 aa10.33□□□□□ -0.76
CCDC40-201ENST00000269318 ATP5EP2Q5VTU8 51 aa10.32□□□□□ -0.76
CCDC40-201ENST00000269318 HIGD2AQ9BW72 106 aa10.32□□□□□ -0.76
CCDC40-201ENST00000269318 Q6ZVQ6 151 aa10.32□□□□□ -0.76
CCDC40-201ENST00000269318 IGLV5-52A0A0A0MRZ9 124 aa10.31□□□□□ -0.76
CCDC40-201ENST00000269318 C3orf84H3BNL1 204 aa10.31□□□□□ -0.76
CCDC40-201ENST00000269318 ANAPC13Q9BS18 74 aa10.3□□□□□ -0.76
CCDC40-201ENST00000269318 FAM236AA0A1B0GUQ0 79 aa10.3□□□□□ -0.76
CCDC40-201ENST00000269318 FAM236BA0A1B0GV22 79 aa10.3□□□□□ -0.76
CCDC40-201ENST00000269318 BCE1O60756 84 aa10.3□□□□□ -0.76
CCDC40-201ENST00000269318 KRTAP13-1Q8IUC0 172 aa10.29□□□□□ -0.76
CCDC40-201ENST00000269318 FRAS1Q86XX4 4008 aa10.29□□□□□ -0.76
CCDC40-201ENST00000269318 PLAC8Q9NZF1 115 aa10.28□□□□□ -0.76
CCDC40-201ENST00000269318 UBE2AP49459 152 aa10.27□□□□□ -0.77
CCDC40-201ENST00000269318 C1orf137Q5JT78 98 aa10.27□□□□□ -0.77
CCDC40-201ENST00000269318 A0A1W2PNM2 257 aa10.26□□□□□ -0.77
CCDC40-201ENST00000269318 HIST1H4AP62805 103 aaKnown RBP10.26□□□□□ -0.77
CCDC40-201ENST00000269318 A0A087WVE0 104 aa10.25□□□□□ -0.77
CCDC40-201ENST00000269318 SPRR1BP22528 89 aa10.25□□□□□ -0.77
CCDC40-201ENST00000269318 DNAH11Q96DT5 4516 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms