RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RPS28P62857 69 aaKnown RBP7.33□□□□□ -1.24
CD44-201ENST00000263398 Q8NBF4 154 aa7.33□□□□□ -1.24
CD44-201ENST00000263398 TACC2O95359 2948 aa7.33□□□□□ -1.24
CD44-201ENST00000263398 NHLRC4P0CG21 123 aaPredicted RBP7.32□□□□□ -1.24
CD44-201ENST00000263398 Q8NAQ8 132 aa7.32□□□□□ -1.24
CD44-201ENST00000263398 IGSF10Q6WRI0 2623 aa7.32□□□□□ -1.24
CD44-201ENST00000263398 Q6ZRX8 168 aa7.32□□□□□ -1.24
CD44-201ENST00000263398 GVQW2A0A096LPI5 108 aaPredicted RBP7.31□□□□□ -1.24
CD44-201ENST00000263398 LAMA5O15230 3695 aa7.31□□□□□ -1.24
CD44-201ENST00000263398 ATRQ13535 2644 aa7.3□□□□□ -1.24
CD44-201ENST00000263398 TP53AIP1Q9HCN2 124 aa7.29□□□□□ -1.24
CD44-201ENST00000263398 DCHS1Q96JQ0 3298 aa7.29□□□□□ -1.24
CD44-201ENST00000263398 LIMD2Q9BT23 127 aa7.28□□□□□ -1.24
CD44-201ENST00000263398 RETNLBQ9BQ08 111 aa7.28□□□□□ -1.24
CD44-201ENST00000263398 LINC00476Q8WZB0 136 aa7.28□□□□□ -1.24
CD44-201ENST00000263398 IGLV6-57P01721 117 aa7.27□□□□□ -1.25
CD44-201ENST00000263398 MDFIQ99750 246 aa7.27□□□□□ -1.25
CD44-201ENST00000263398 PRO0628Q9UI54 55 aa7.27□□□□□ -1.25
CD44-201ENST00000263398 EIF4EBP3O60516 100 aaPredicted RBP7.27□□□□□ -1.25
CD44-201ENST00000263398 VPREB1P12018 145 aa7.27□□□□□ -1.25
CD44-201ENST00000263398 CSNK1G2-AS1Q8NCQ2 148 aa7.25□□□□□ -1.25
CD44-201ENST00000263398 H3BPC8 53 aa7.25□□□□□ -1.25
CD44-201ENST00000263398 TM2D3Q9BRN9 247 aa7.25□□□□□ -1.25
CD44-201ENST00000263398 TEP1Q99973 2627 aaKnown RBP7.25□□□□□ -1.25
CD44-201ENST00000263398 SPINK1P00995 79 aa7.25□□□□□ -1.25
CD44-201ENST00000263398 MOBPQ13875 183 aa7.25□□□□□ -1.25
CD44-201ENST00000263398 MAST4O15021 2626 aa7.24□□□□□ -1.25
CD44-201ENST00000263398 Q6ZRP5 223 aa7.24□□□□□ -1.25
CD44-201ENST00000263398 C16orf90A8MZG2 172 aa7.24□□□□□ -1.25
CD44-201ENST00000263398 LINC00588Q9Y4M8 146 aa7.24□□□□□ -1.25
CD44-201ENST00000263398 ST20-AS1Q8NBB2 130 aa7.23□□□□□ -1.25
CD44-201ENST00000263398 KRTAP24-1Q3LI83 254 aa7.23□□□□□ -1.25
CD44-201ENST00000263398 PHF5AQ7RTV0 110 aaKnown RBP7.23□□□□□ -1.25
CD44-201ENST00000263398 DNAH10OSP0CZ25 163 aa7.22□□□□□ -1.25
CD44-201ENST00000263398 TRBV7-4A0A0J9YYF1 115 aa7.22□□□□□ -1.25
CD44-201ENST00000263398 EPM2AB3EWF7 344 aa7.22□□□□□ -1.25
CD44-201ENST00000263398 IGKV2D-30A0A075B6S6 120 aa7.22□□□□□ -1.25
CD44-201ENST00000263398 IGKV2-30P06310 120 aa7.22□□□□□ -1.25
CD44-201ENST00000263398 TRAV22A0A0B4J277 110 aa7.21□□□□□ -1.25
CD44-201ENST00000263398 CHD6Q8TD26 2715 aa7.21□□□□□ -1.25
CD44-201ENST00000263398 ZFHX4Q86UP3 3567 aa7.2□□□□□ -1.26
CD44-201ENST00000263398 C4orf26Q17RF5 130 aa7.2□□□□□ -1.26
CD44-201ENST00000263398 RELNP78509 3460 aa7.19□□□□□ -1.26
CD44-201ENST00000263398 A0A096LNT2 108 aa7.19□□□□□ -1.26
CD44-201ENST00000263398 LINC00528Q8N1L1 170 aa7.19□□□□□ -1.26
CD44-201ENST00000263398 PRR34Q9NV39 138 aa7.19□□□□□ -1.26
CD44-201ENST00000263398 NBDYA0A0U1RRE5 68 aa7.19□□□□□ -1.26
CD44-201ENST00000263398 KCNQ1DNQ9H478 68 aa7.19□□□□□ -1.26
CD44-201ENST00000263398 ACYP2P14621 99 aa7.18□□□□□ -1.26
CD44-201ENST00000263398 GIG44P09565 113 aaPredicted RBP7.18□□□□□ -1.26
CD44-201ENST00000263398 SPACA4Q8TDM5 124 aa7.18□□□□□ -1.26
CD44-201ENST00000263398 C19orf73Q9NVV2 129 aa7.18□□□□□ -1.26
CD44-201ENST00000263398 ERC2-IT1O76042 136 aa7.17□□□□□ -1.26
CD44-201ENST00000263398 ITPR1Q14643 2758 aa7.17□□□□□ -1.26
CD44-201ENST00000263398 TEX15Q9BXT5 2789 aa7.17□□□□□ -1.26
CD44-201ENST00000263398 LINC00612Q8N6U2 182 aa7.16□□□□□ -1.26
CD44-201ENST00000263398 A0A1B0GU69 56 aa7.16□□□□□ -1.26
CD44-201ENST00000263398 SERTAD4-AS1Q5TG53 156 aa7.16□□□□□ -1.26
CD44-201ENST00000263398 CHTF8P0CG12 524 aa7.15□□□□□ -1.26
CD44-201ENST00000263398 IGLV1-50A0A075B6I6 118 aa7.15□□□□□ -1.26
CD44-201ENST00000263398 RPL37AP61513 92 aaKnown RBP7.15□□□□□ -1.27
CD44-201ENST00000263398 FAM168BA1KXE4 195 aa7.14□□□□□ -1.27
CD44-201ENST00000263398 RTL8CO15255 209 aa7.14□□□□□ -1.27
CD44-201ENST00000263398 SPAG11AQ6PDA7 123 aa7.14□□□□□ -1.27
CD44-201ENST00000263398 K7EQZ3 153 aa7.13□□□□□ -1.27
CD44-201ENST00000263398 C7orf65Q6ZTY9 151 aa7.13□□□□□ -1.27
CD44-201ENST00000263398 A8MWP4 228 aa7.13□□□□□ -1.27
CD44-201ENST00000263398 KLKP1Q107X0 134 aa7.12□□□□□ -1.27
CD44-201ENST00000263398 LINC00313P59037 77 aa7.11□□□□□ -1.27
CD44-201ENST00000263398 C15orf56Q8N910 161 aa7.11□□□□□ -1.27
CD44-201ENST00000263398 GCN1Q92616 2671 aaKnown RBP7.11□□□□□ -1.27
CD44-201ENST00000263398 UNC79Q9P2D8 2635 aa7.1□□□□□ -1.27
CD44-201ENST00000263398 LOC101927531A0A1B0GV80 90 aa7.1□□□□□ -1.27
CD44-201ENST00000263398 Q8N377 158 aa7.1□□□□□ -1.27
CD44-201ENST00000263398 UTP20O75691 2785 aaKnown RBP7.09□□□□□ -1.28
CD44-201ENST00000263398 IGFL1Q6UW32 110 aa7.08□□□□□ -1.28
CD44-201ENST00000263398 ZANQ9Y493 2812 aa7.08□□□□□ -1.28
CD44-201ENST00000263398 CRYBG3Q68DQ2 2970 aa7.08□□□□□ -1.28
CD44-201ENST00000263398 ZNF575Q86XF7 245 aa7.08□□□□□ -1.28
CD44-201ENST00000263398 MRPL34Q9BQ48 92 aaKnown RBP7.07□□□□□ -1.28
CD44-201ENST00000263398 C9orf129Q5T035 196 aaKnown RBP7.07□□□□□ -1.28
CD44-201ENST00000263398 UBR5O95071 2799 aaPredicted RBP7.07□□□□□ -1.28
CD44-201ENST00000263398 C8orf87E5RJ46 101 aa7.07□□□□□ -1.28
CD44-201ENST00000263398 FAM229AH3BQW9 127 aa7.07□□□□□ -1.28
CD44-201ENST00000263398 TLX1NBP0CAT3 122 aa7.06□□□□□ -1.28
CD44-201ENST00000263398 TYMSOSQ8TAI1 123 aa7.06□□□□□ -1.28
CD44-201ENST00000263398 PRR15Q8IV56 129 aa7.06□□□□□ -1.28
CD44-201ENST00000263398 ASH1LQ9NR48 2969 aaKnown RBP7.06□□□□□ -1.28
CD44-201ENST00000263398 NBEAL2Q6ZNJ1 2754 aa7.05□□□□□ -1.28
CD44-201ENST00000263398 PLA2G2DQ9UNK4 145 aa7.05□□□□□ -1.28
CD44-201ENST00000263398 KRTAP10-11P60412 298 aa7.04□□□□□ -1.28
CD44-201ENST00000263398 ATP11AUNQ6ZP68 121 aa7.04□□□□□ -1.28
CD44-201ENST00000263398 H7BZZ5 65 aa7.03□□□□□ -1.28
CD44-201ENST00000263398 KRTAP10-3P60369 221 aa7.03□□□□□ -1.28
CD44-201ENST00000263398 ITPR2Q14571 2701 aa7.03□□□□□ -1.28
CD44-201ENST00000263398 K7EIL1 84 aa7.03□□□□□ -1.28
CD44-201ENST00000263398 A8MUN3 132 aa7.03□□□□□ -1.28
CD44-201ENST00000263398 LINC01600Q96MT4 127 aa7.03□□□□□ -1.28
CD44-201ENST00000263398 SETXQ7Z333 2677 aaKnown RBP7.02□□□□□ -1.28
CD44-201ENST00000263398 COA5Q86WW8 74 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms