RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Crybb3Q9JJU9 211 aa13.73□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Gm45213A0A0U1RNZ6 101 aa13.73□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Mrps21P58059 87 aa13.73□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 PerpQ9JK95 193 aa13.73□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Ms4a8Q99N10 290 aa13.73□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Siglec15A7E1W8 342 aa13.73□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 SNORCQ9CXL7 121 aa13.73□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Smim26Q3V460 107 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 TdhQ8K3F7 373 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Ighv1-76A0A0G2JFE9 117 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Saa4P31532 130 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Otx1P80205 355 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Klf2Q60843 354 aaKnown RBP13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Lyzl1Q9CPX3 148 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Gm10203F6QJ09 66 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Ighv1-34A0A075B5V2 117 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Ighv1-37A0A0A6YW32 117 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Hist1h4aP62806 103 aaKnown RBP13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Cd200r1lQ6XJV6 249 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Gtf3aQ8VHT7 364 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Rnf126Q91YL2 313 aa13.72□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Zfp420Q7TMN8 578 aa13.71□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Tpsab1Q02844 273 aa13.71□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Gm19345G3UYD9 124 aa13.71□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Olfr1402Q8VET1 320 aa13.71□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Hoxd3P09027 433 aa13.71□□□□□ -0.21
Ccdc88a-201ENSMUST00000040182 Mst1P26928 716 aa13.71□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Rpl36aP83882 106 aaKnown RBP13.71□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 VsirQ9D659 308 aa13.71□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Ndufa7Q9Z1P6 113 aaKnown RBP13.71□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Tmem141A2AJB2 108 aa13.71□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Trbv3A0A0A6YYE2 117 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Repin1Q5U4E2 545 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Igkv4-70A0A0B4J1I5 116 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm12355A2A4X6 163 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Srsf3P84104 164 aaKnown RBP13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm21370Q3T9V6 190 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 H2al1nQ497L1 109 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Tusc5Q8C838 173 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Trav8-1A0A075B641 109 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm4894Q8CA09 118 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Tex36Q9D5N9 219 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Fbxl7Q5BJ29 491 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Hist2h2beQ64524 126 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Lrrc25Q8K1T1 297 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 P01725 110 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Pax1P09084 446 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 SlaQ60898 281 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Taf15Q8BQ46 557 aaKnown RBP13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm4064A0A087WR82 380 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm10352B2RWR6 380 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm21693J3QK27 380 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Rbmy1a1O35698 380 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm16686Q3UMN9 131 aa13.7□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Igkv14-130A0A0G2JF45 117 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Lamtor3O88653 124 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Neurog3P70661 214 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Tmem30bQ8BHG3 353 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Rnf217D3YYI7 515 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gata2O09100 480 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm10604Q3V0X7 143 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 4930442H23RikQ9D5G7 103 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 LenepQ9WVB6 61 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm13090A2A899 111 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Wnt2P21552 360 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Dkk1O54908 272 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Rnf166Q3U9F6 237 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Cox7a2lQ61387 111 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 4931428L18RikQ9D4S9 127 aa13.69□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Gm29423A0A087WRM1 55 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Sp9Q64HY3 484 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 C330021F23RikQ8C7T0 141 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 A0A286YE02 88 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Shisa3Q3UPR0 238 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Srsf2Q62093 221 aaKnown RBP13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 1700013G24RikQ9DAC6 286 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Inafm2A0A1L1STD6 152 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Chac1Q8R3J5 223 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Lgals4Q8K419 326 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Reg1P43137 165 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Fam19a2Q7TPG7 131 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Tmem8bB1AWJ5 472 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Immp1lQ9CQU8 166 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Tm4sf20Q9CQY8 226 aa13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Mrps11Q9DCA2 191 aaKnown RBP13.68□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Fam240bJ3QMB3 78 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Ighv7-2A0A0A6YX91 119 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 P01802 115 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Slc17a9Q8VCL5 447 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Crim1Q9JLL0 1037 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Iglv3A0A0B4J1K5 122 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 CntfrO88507 372 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 AtraidQ6PGD0 223 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 MrapQ9D159 127 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Rpl32-psP17932 135 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Folr2Q05685 251 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Mrpl16Q99N93 251 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Xcl1P47993 114 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Tex26Q0VB26 296 aa13.67□□□□□ -0.22
Ccdc88a-201ENSMUST00000040182 Mogat1Q91ZV4 335 aa13.67□□□□□ -0.22
Retrieved 100 of 22,080 RNA–protein pairs in 44.1 ms