RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.7□□□□□ -1.662e-6■■■□□ 17
SCN1A-213ENST00000636759 K7EMT4 169 aa4.7□□□□□ -1.66
SCN1A-213ENST00000636759 BRD3OSQ6XYD6 125 aa4.7□□□□□ -1.66
SCN1A-213ENST00000636759 PRM2P04554 102 aa4.69□□□□□ -1.66
SCN1A-213ENST00000636759 B4DSR2 109 aa4.69□□□□□ -1.66
SCN1A-213ENST00000636759 FSHBP01225 129 aa4.69□□□□□ -1.66
SCN1A-213ENST00000636759 NCOR2Q9Y618 2525 aa4.69□□□□□ -1.66
SCN1A-213ENST00000636759 NDUFB1O75438 58 aa4.68□□□□□ -1.66
SCN1A-213ENST00000636759 COX7BP24311 80 aa4.68□□□□□ -1.66
SCN1A-213ENST00000636759 DIRC1Q969H9 104 aa4.68□□□□□ -1.66
SCN1A-213ENST00000636759 CR1P17927 2039 aa4.68□□□□□ -1.66
SCN1A-213ENST00000636759 DNAH3Q8TD57 4116 aa4.68□□□□□ -1.66
SCN1A-213ENST00000636759 NKAPP1Q8N9T2 125 aa4.68□□□□□ -1.66
SCN1A-213ENST00000636759 CYP4F30PQ9H0H9 118 aa4.68□□□□□ -1.66
SCN1A-213ENST00000636759 TRGV1A0A0A0MS02 117 aa4.68□□□□□ -1.66
SCN1A-213ENST00000636759 SMIM29Q86T20 159 aa4.68□□□□□ -1.66
SCN1A-213ENST00000636759 ZANQ9Y493 2812 aa4.67□□□□□ -1.66
SCN1A-213ENST00000636759 IGHV3OR16-9A0A0B4J2B5 98 aa4.67□□□□□ -1.66
SCN1A-213ENST00000636759 HIGD2BQ4VC39 106 aa4.67□□□□□ -1.66
SCN1A-213ENST00000636759 A8MTW9 85 aa4.67□□□□□ -1.66
SCN1A-213ENST00000636759 H3BUX3 64 aa4.67□□□□□ -1.66
SCN1A-213ENST00000636759 FLNCQ14315 2725 aa4.66□□□□□ -1.66
SCN1A-213ENST00000636759 USP24Q9UPU5 2620 aa4.66□□□□□ -1.66
SCN1A-213ENST00000636759 TRGV2A0A075B6R0 118 aa4.66□□□□□ -1.66
SCN1A-213ENST00000636759 A6NN06 94 aa4.66□□□□□ -1.66
SCN1A-213ENST00000636759 DEFB131AP59861 70 aa4.66□□□□□ -1.66
SCN1A-213ENST00000636759 KRTAP1-3Q8IUG1 177 aa4.66□□□□□ -1.66
SCN1A-213ENST00000636759 ETDCA0A1B0GVM5 59 aa4.66□□□□□ -1.66
SCN1A-213ENST00000636759 DOPEY1Q5JWR5 2465 aa4.66□□□□□ -1.66
SCN1A-213ENST00000636759 DNAH1Q9P2D7 4330 aa4.65□□□□□ -1.66
SCN1A-213ENST00000636759 IGLV4-60A0A075B6I1 120 aa4.65□□□□□ -1.66
SCN1A-213ENST00000636759 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.65□□□□□ -1.66
SCN1A-213ENST00000636759 B9D2Q9BPU9 175 aa4.65□□□□□ -1.66
SCN1A-213ENST00000636759 TRRAPQ9Y4A5 3859 aa4.65□□□□□ -1.67
SCN1A-213ENST00000636759 IGHV4-31P0DP07 118 aa4.65□□□□□ -1.67
SCN1A-213ENST00000636759 KRTAP10-9P60411 292 aa4.65□□□□□ -1.67
SCN1A-213ENST00000636759 LY6EQ16553 131 aa4.65□□□□□ -1.67
SCN1A-213ENST00000636759 C3orf84H3BNL1 204 aa4.64□□□□□ -1.67
SCN1A-213ENST00000636759 DEFB112Q30KQ8 113 aa4.64□□□□□ -1.67
SCN1A-213ENST00000636759 Q8IZM0 81 aa4.64□□□□□ -1.67
SCN1A-213ENST00000636759 NOTCH3Q9UM47 2321 aa4.64□□□□□ -1.67
SCN1A-213ENST00000636759 SPTAN1Q13813 2472 aaKnown RBP4.64□□□□□ -1.67
SCN1A-213ENST00000636759 INSP01308 110 aa4.64□□□□□ -1.67
SCN1A-213ENST00000636759 MP68P56378 58 aa4.64□□□□□ -1.67
SCN1A-213ENST00000636759 LINC00208Q96KT6 92 aa4.64□□□□□ -1.67
SCN1A-213ENST00000636759 ESM1Q9NQ30 184 aa4.64□□□□□ -1.67
SCN1A-213ENST00000636759 DEFB114Q30KQ6 69 aa4.64□□□□□ -1.67
SCN1A-213ENST00000636759 Q6YL49 198 aa4.64□□□□□ -1.67
SCN1A-213ENST00000636759 Q8N9P0 234 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-213ENST00000636759 MAP1AP78559 2803 aaPredicted RBP4.64□□□□□ -1.67
SCN1A-213ENST00000636759 DEFB113Q30KQ7 82 aa4.63□□□□□ -1.67
SCN1A-213ENST00000636759 IGHV4-59P01825 116 aa4.63□□□□□ -1.67
SCN1A-213ENST00000636759 COX17Q14061 63 aa4.63□□□□□ -1.67
SCN1A-213ENST00000636759 CDC42SE1Q9NRR8 79 aa4.63□□□□□ -1.67
SCN1A-213ENST00000636759 USP9XQ93008 2570 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-213ENST00000636759 C10orf25Q5T742 122 aa4.63□□□□□ -1.67
SCN1A-213ENST00000636759 MDFIQ99750 246 aa4.63□□□□□ -1.67
SCN1A-213ENST00000636759 NBASA2RRP1 2371 aa4.62□□□□□ -1.67
SCN1A-213ENST00000636759 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-213ENST00000636759 KHDC1LQ5JSQ8 128 aa4.62□□□□□ -1.67
SCN1A-213ENST00000636759 KLK12Q9UKR0 248 aa4.62□□□□□ -1.67
SCN1A-213ENST00000636759 VPREB1P12018 145 aa4.62□□□□□ -1.67
SCN1A-213ENST00000636759 ELOF1P60002 83 aaKnown RBP4.62□□□□□ -1.67
SCN1A-213ENST00000636759 Q75L30 129 aa4.62□□□□□ -1.67
SCN1A-213ENST00000636759 ZCCHC13Q8WW36 166 aaKnown RBP4.62□□□□□ -1.67
SCN1A-213ENST00000636759 IGHV4-28A0A0C4DH34 117 aa4.61□□□□□ -1.67
SCN1A-213ENST00000636759 LINC00959A0A1B0GUT2 108 aa4.61□□□□□ -1.67
SCN1A-213ENST00000636759 ZNF702PQ9H963 129 aa4.61□□□□□ -1.67
SCN1A-213ENST00000636759 NIPBLQ6KC79 2804 aaeCLIP4.61□□□□□ -1.67
SCN1A-213ENST00000636759 TRGV4A0A0C4DH28 118 aa4.61□□□□□ -1.67
SCN1A-213ENST00000636759 LCE6AA0A183 80 aa4.61□□□□□ -1.67
SCN1A-213ENST00000636759 C9orf116Q5BN46 136 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-213ENST00000636759 C10orf99Q6UWK7 81 aa4.61□□□□□ -1.67
SCN1A-213ENST00000636759 LINC00612Q8N6U2 182 aa4.61□□□□□ -1.67
SCN1A-213ENST00000636759 CCL24O00175 119 aa4.6□□□□□ -1.67
SCN1A-213ENST00000636759 MAPK1IP1LQ8NDC0 245 aa4.6□□□□□ -1.67
SCN1A-213ENST00000636759 CSMD3Q7Z407 3707 aa4.6□□□□□ -1.67
SCN1A-213ENST00000636759 SERTAD4-AS1Q5TG53 156 aa4.6□□□□□ -1.67
SCN1A-213ENST00000636759 WNK1Q9H4A3 2382 aa4.6□□□□□ -1.67
SCN1A-213ENST00000636759 LOC101927531A0A1B0GV80 90 aa4.59□□□□□ -1.67
SCN1A-213ENST00000636759 CLPSL2Q6UWE3 100 aa4.59□□□□□ -1.67
SCN1A-213ENST00000636759 PLA2G2AP14555 144 aa4.59□□□□□ -1.68
SCN1A-213ENST00000636759 WFDC10AQ9H1F0 79 aa4.59□□□□□ -1.68
SCN1A-213ENST00000636759 PRR26Q8N8Z3 221 aa4.58□□□□□ -1.68
SCN1A-213ENST00000636759 ST20-AS1Q8NBB2 130 aa4.58□□□□□ -1.68
SCN1A-213ENST00000636759 LYSTQ99698 3801 aa4.58□□□□□ -1.68
SCN1A-213ENST00000636759 PDZD2O15018 2839 aa4.58□□□□□ -1.68
SCN1A-213ENST00000636759 TENM4Q6N022 2769 aa4.58□□□□□ -1.68
SCN1A-213ENST00000636759 KMT2BQ9UMN6 2715 aaPredicted RBP4.58□□□□□ -1.68
SCN1A-213ENST00000636759 MOBPQ13875 183 aa4.58□□□□□ -1.68
SCN1A-213ENST00000636759 LINC01554Q52M75 96 aa4.58□□□□□ -1.68
SCN1A-213ENST00000636759 CASC2Q6XLA1 102 aa4.58□□□□□ -1.68
SCN1A-213ENST00000636759 SETXQ7Z333 2677 aaKnown RBP4.58□□□□□ -1.68
SCN1A-213ENST00000636759 LOC100131303A0A0U1RQF7 123 aa4.58□□□□□ -1.68
SCN1A-213ENST00000636759 IGLV6-57P01721 117 aa4.57□□□□□ -1.68
SCN1A-213ENST00000636759 APCP25054 2843 aa4.57□□□□□ -1.68
SCN1A-213ENST00000636759 Q9BRP9 147 aa4.57□□□□□ -1.68
SCN1A-213ENST00000636759 NOP10Q9NPE3 64 aaKnown RBP4.57□□□□□ -1.68
SCN1A-213ENST00000636759 KRTAP1-1Q07627 177 aa4.56□□□□□ -1.68
SCN1A-213ENST00000636759 SPAG11BQ08648 103 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms