RNA–Protein interactions for RNA: ENST00000616236.1

RFC3-203, Transcript of replication factor C subunit 3, humanhuman

TSL 3

Gene RFC3, Length 612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3-203ENST00000616236 TNCP24821 2201 aa1□□□□□ -2.25
RFC3-203ENST00000616236 CCDC141Q6ZP82 1450 aa1□□□□□ -2.25
RFC3-203ENST00000616236 USMG5Q96IX5 58 aa1□□□□□ -2.25
RFC3-203ENST00000616236 ABCC1P33527 1531 aa0.99□□□□□ -2.25
RFC3-203ENST00000616236 CACNA1EQ15878 2313 aa0.99□□□□□ -2.25
RFC3-203ENST00000616236 PIEZO2Q9H5I5 2752 aa0.99□□□□□ -2.25
RFC3-203ENST00000616236 KRTAP4-1Q9BYQ7 146 aa0.99□□□□□ -2.25
RFC3-203ENST00000616236 ZNF831Q5JPB2 1677 aa0.99□□□□□ -2.25
RFC3-203ENST00000616236 PIK3C2BO00750 1634 aa0.99□□□□□ -2.25
RFC3-203ENST00000616236 RGPD8O14715 1765 aaPredicted RBP0.98□□□□□ -2.25
RFC3-203ENST00000616236 RGPD5Q99666 1765 aa0.98□□□□□ -2.25
RFC3-203ENST00000616236 COX6B1P14854 86 aa0.98□□□□□ -2.25
RFC3-203ENST00000616236 CRIPTQ9P021 101 aa0.98□□□□□ -2.25
RFC3-203ENST00000616236 TPRP12270 2363 aaKnown RBP0.98□□□□□ -2.25
RFC3-203ENST00000616236 TRAV21A0A0B4J279 112 aa0.97□□□□□ -2.25
RFC3-203ENST00000616236 GAFA1Q96PS6 74 aa0.97□□□□□ -2.25
RFC3-203ENST00000616236 PIEZO1Q92508 2521 aa0.97□□□□□ -2.25
RFC3-203ENST00000616236 POLR1AO95602 1720 aaPredicted RBP0.97□□□□□ -2.25
RFC3-203ENST00000616236 PPRC1Q5VV67 1664 aaKnown RBP0.97□□□□□ -2.25
RFC3-203ENST00000616236 PTPRZ1P23471 2315 aaPredicted RBP0.97□□□□□ -2.25
RFC3-203ENST00000616236 PTPN23Q9H3S7 1636 aa0.97□□□□□ -2.25
RFC3-203ENST00000616236 URB2Q14146 1524 aaKnown RBP0.96□□□□□ -2.26
RFC3-203ENST00000616236 DEFB121Q5J5C9 76 aa0.96□□□□□ -2.26
RFC3-203ENST00000616236 Q5VSD8 79 aa0.96□□□□□ -2.26
RFC3-203ENST00000616236 SMR3AQ99954 134 aa0.96□□□□□ -2.26
RFC3-203ENST00000616236 PTPRQQ9UMZ3 2332 aa0.96□□□□□ -2.26
RFC3-203ENST00000616236 ABCA8O94911 1581 aa0.96□□□□□ -2.26
RFC3-203ENST00000616236 NKTRP30414 1462 aaKnown RBP0.95□□□□□ -2.26
RFC3-203ENST00000616236 SPTY2D1-AS1A0A0U1RR47 76 aa0.95□□□□□ -2.26
RFC3-203ENST00000616236 COX7BP24311 80 aa0.95□□□□□ -2.26
RFC3-203ENST00000616236 C18orf32Q8TCD1 76 aa0.95□□□□□ -2.26
RFC3-203ENST00000616236 USP32Q8NFA0 1604 aa0.95□□□□□ -2.26
RFC3-203ENST00000616236 ANKARQ7Z5J8 1434 aa0.95□□□□□ -2.26
RFC3-203ENST00000616236 CEP170BQ9Y4F5 1589 aaPredicted RBP0.95□□□□□ -2.26
RFC3-203ENST00000616236 COX8AP10176 69 aa0.94□□□□□ -2.26
RFC3-203ENST00000616236 WFDC9Q8NEX5 89 aa0.94□□□□□ -2.26
RFC3-203ENST00000616236 NCOA2Q15596 1464 aa0.93□□□□□ -2.26
RFC3-203ENST00000616236 I3L3M4 83 aa0.93□□□□□ -2.26
RFC3-203ENST00000616236 CFDP00746 253 aaPredicted RBP0.93□□□□□ -2.26
RFC3-203ENST00000616236 SPRR1BP22528 89 aa0.93□□□□□ -2.26
RFC3-203ENST00000616236 Q5BKY6 102 aa0.93□□□□□ -2.26
RFC3-203ENST00000616236 SPRR1AP35321 89 aa0.92□□□□□ -2.26
RFC3-203ENST00000616236 ATP5EP2Q5VTU8 51 aa0.92□□□□□ -2.26
RFC3-203ENST00000616236 SCN11AQ9UI33 1791 aa0.92□□□□□ -2.26
RFC3-203ENST00000616236 BCORQ6W2J9 1755 aa0.91□□□□□ -2.26
RFC3-203ENST00000616236 CPSF4LA6NMK7 179 aaKnown RBP0.91□□□□□ -2.26
RFC3-203ENST00000616236 NDUFB1O75438 58 aa0.91□□□□□ -2.26
RFC3-203ENST00000616236 DOT1LQ8TEK3 1739 aa0.91□□□□□ -2.26
RFC3-203ENST00000616236 SPTBN1Q01082 2364 aaKnown RBP0.91□□□□□ -2.26
RFC3-203ENST00000616236 MYO5CQ9NQX4 1742 aa0.9□□□□□ -2.27
RFC3-203ENST00000616236 ARFGEF2Q9Y6D5 1785 aa0.9□□□□□ -2.27
RFC3-203ENST00000616236 IQGAP3Q86VI3 1631 aa0.89□□□□□ -2.27
RFC3-203ENST00000616236 A0A087WXM4 84 aa0.89□□□□□ -2.27
RFC3-203ENST00000616236 SMIM13P0DJ93 91 aa0.89□□□□□ -2.27
RFC3-203ENST00000616236 MAGI3Q5TCQ9 1506 aa0.89□□□□□ -2.27
RFC3-203ENST00000616236 CCDC88BA6NC98 1476 aa0.88□□□□□ -2.27
RFC3-203ENST00000616236 MRPL34Q9BQ48 92 aaKnown RBP0.88□□□□□ -2.27
RFC3-203ENST00000616236 TIAM2Q8IVF5 1701 aa0.88□□□□□ -2.27
RFC3-203ENST00000616236 SPINK1P00995 79 aa0.87□□□□□ -2.27
RFC3-203ENST00000616236 IFI6P09912 130 aa0.87□□□□□ -2.27
RFC3-203ENST00000616236 DEFB109BQ30KR1 87 aa0.87□□□□□ -2.27
RFC3-203ENST00000616236 FXYD6Q9H0Q3 95 aa0.87□□□□□ -2.27
RFC3-203ENST00000616236 PKDREJQ9NTG1 2253 aa0.87□□□□□ -2.27
RFC3-203ENST00000616236 RPL38P63173 70 aaKnown RBP0.86□□□□□ -2.27
RFC3-203ENST00000616236 SMCO4Q9NRQ5 59 aa0.86□□□□□ -2.27
RFC3-203ENST00000616236 AKAP6Q13023 2319 aa0.86□□□□□ -2.27
RFC3-203ENST00000616236 AHNAKQ09666 5890 aaKnown RBP0.86□□□□□ -2.27
RFC3-203ENST00000616236 UGGT2Q9NYU1 1516 aa0.85□□□□□ -2.27
RFC3-203ENST00000616236 CFAP43Q8NDM7 1665 aa0.85□□□□□ -2.27
RFC3-203ENST00000616236 PREX1Q8TCU6 1659 aa0.85□□□□□ -2.27
RFC3-203ENST00000616236 GVINP1Q7Z2Y8 2422 aa0.85□□□□□ -2.27
RFC3-203ENST00000616236 UMAD1C9J7I0 102 aa0.85□□□□□ -2.27
RFC3-203ENST00000616236 IGF2RP11717 2491 aa0.85□□□□□ -2.27
RFC3-203ENST00000616236 IFI27P40305 119 aaPredicted RBP0.85□□□□□ -2.27
RFC3-203ENST00000616236 DEFB105AQ8NG35 78 aa0.85□□□□□ -2.27
RFC3-203ENST00000616236 APLNQ9ULZ1 77 aa0.85□□□□□ -2.27
RFC3-203ENST00000616236 CSMD3Q7Z407 3707 aa0.84□□□□□ -2.27
RFC3-203ENST00000616236 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.84□□□□□ -2.282e-10■■■■■ 39.2
RFC3-203ENST00000616236 CLIP1P30622 1438 aa0.83□□□□□ -2.28
RFC3-203ENST00000616236 KLK9Q2XQG4 91 aa0.82□□□□□ -2.28
RFC3-203ENST00000616236 DEFA5Q01523 94 aa0.81□□□□□ -2.28
RFC3-203ENST00000616236 NREPQ16612 68 aa0.81□□□□□ -2.28
RFC3-203ENST00000616236 ZFYVE26Q68DK2 2539 aa0.8□□□□□ -2.28
RFC3-203ENST00000616236 MACF1Q9UPN3 7388 aaKnown RBP0.8□□□□□ -2.28
RFC3-203ENST00000616236 CCL22O00626 93 aa0.8□□□□□ -2.28
RFC3-203ENST00000616236 PDCD5O14737 125 aa0.8□□□□□ -2.28
RFC3-203ENST00000616236 PKD1L2Q7Z442 2459 aa0.8□□□□□ -2.28
RFC3-203ENST00000616236 CD163L1Q9NR16 1453 aa0.8□□□□□ -2.28
RFC3-203ENST00000616236 NWD1Q149M9 1564 aa0.79□□□□□ -2.28
RFC3-203ENST00000616236 CACNA1AO00555 2505 aa0.79□□□□□ -2.28
RFC3-203ENST00000616236 H1FX-AS1Q4G0G2 97 aa0.79□□□□□ -2.28
RFC3-203ENST00000616236 OTOGQ6ZRI0 2925 aa0.79□□□□□ -2.28
RFC3-203ENST00000616236 COL6A3P12111 3177 aa0.79□□□□□ -2.28
RFC3-203ENST00000616236 DNMBPQ6XZF7 1577 aa0.79□□□□□ -2.28
RFC3-203ENST00000616236 RICTORQ6R327 1708 aa0.78□□□□□ -2.28
RFC3-203ENST00000616236 USP24Q9UPU5 2620 aa0.78□□□□□ -2.28
RFC3-203ENST00000616236 PLCH1Q4KWH8 1693 aa0.78□□□□□ -2.29
RFC3-203ENST00000616236 TNRC6CQ9HCJ0 1690 aaKnown RBP0.78□□□□□ -2.29
RFC3-203ENST00000616236 UBR4Q5T4S7 5183 aa0.78□□□□□ -2.29
RFC3-203ENST00000616236 CNOT1A5YKK6 2376 aaKnown RBP0.77□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms