RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TSPEAR-AS2P59090 65 aa9.77□□□□□ -0.85
TRIM28-213ENST00000598355 HERV-K104P63124 156 aa9.76□□□□□ -0.85
TRIM28-213ENST00000598355 Q8NDZ9 215 aa9.76□□□□□ -0.85
TRIM28-213ENST00000598355 NKAPP1Q8N9T2 125 aa9.75□□□□□ -0.85
TRIM28-213ENST00000598355 MAP1LC3CQ9BXW4 147 aa9.75□□□□□ -0.85
TRIM28-213ENST00000598355 NDUFA12Q9UI09 145 aa9.75□□□□□ -0.85
TRIM28-213ENST00000598355 LEPROTO15243 131 aa9.74□□□□□ -0.85
TRIM28-213ENST00000598355 ZNF861PO60384 105 aa9.74□□□□□ -0.85
TRIM28-213ENST00000598355 BCE1O60756 84 aa9.74□□□□□ -0.85
TRIM28-213ENST00000598355 IGKCP01834 107 aa9.74□□□□□ -0.85
TRIM28-213ENST00000598355 KRTAP1-4P0C5Y4 121 aa9.74□□□□□ -0.85
TRIM28-213ENST00000598355 PMCHL2Q9BQD1 86 aa9.74□□□□□ -0.85
TRIM28-213ENST00000598355 SYS1-DBNDD2H3BUS1 97 aa9.73□□□□□ -0.85
TRIM28-213ENST00000598355 PLEKHB2Q96CS7 222 aa9.73□□□□□ -0.85
TRIM28-213ENST00000598355 RPL37AP8A6NKH3 93 aa9.72□□□□□ -0.85
TRIM28-213ENST00000598355 LINC00158P58513 81 aa9.72□□□□□ -0.85
TRIM28-213ENST00000598355 RPL24P83731 157 aaKnown RBP9.72□□□□□ -0.85
TRIM28-213ENST00000598355 KRTAP13-1Q8IUC0 172 aa9.72□□□□□ -0.85
TRIM28-213ENST00000598355 HMCN2Q8NDA2 5059 aa9.72□□□□□ -0.85
TRIM28-213ENST00000598355 MYMXA0A1B0GTQ4 84 aa9.71□□□□□ -0.86
TRIM28-213ENST00000598355 GAGE10A6NGK3 116 aa9.71□□□□□ -0.86
TRIM28-213ENST00000598355 J3QQQ9 107 aa9.71□□□□□ -0.86
TRIM28-213ENST00000598355 SMIM13P0DJ93 91 aa9.71□□□□□ -0.86
TRIM28-213ENST00000598355 HERVK_113P61574 105 aa9.71□□□□□ -0.86
TRIM28-213ENST00000598355 LINC01545Q5VT33 79 aa9.71□□□□□ -0.86
TRIM28-213ENST00000598355 IGLV1-50A0A075B6I6 118 aa9.7□□□□□ -0.86
TRIM28-213ENST00000598355 LINC00587B1AMM8 73 aa9.7□□□□□ -0.86
TRIM28-213ENST00000598355 NMUP48645 174 aa9.7□□□□□ -0.86
TRIM28-213ENST00000598355 E9PLD3 99 aa9.69□□□□□ -0.86
TRIM28-213ENST00000598355 MEIG1Q5JSS6 88 aa9.69□□□□□ -0.86
TRIM28-213ENST00000598355 MIR7-3HGQ8N6C7 128 aa9.69□□□□□ -0.86
TRIM28-213ENST00000598355 IGKV2-28A0A075B6P5 120 aa9.68□□□□□ -0.86
TRIM28-213ENST00000598355 LOC107984156A0A0G2JMH3 177 aa9.68□□□□□ -0.86
TRIM28-213ENST00000598355 A0A0U1RRA0 63 aa9.68□□□□□ -0.86
TRIM28-213ENST00000598355 IGKV2D-28P01615 120 aa9.68□□□□□ -0.86
TRIM28-213ENST00000598355 S100A1P23297 94 aa9.68□□□□□ -0.86
TRIM28-213ENST00000598355 RPL28P46779 137 aaKnown RBP9.68□□□□□ -0.86
TRIM28-213ENST00000598355 PET117Q6UWS5 81 aa9.68□□□□□ -0.86
TRIM28-213ENST00000598355 ARL17AQ8IVW1 177 aa9.68□□□□□ -0.86
TRIM28-213ENST00000598355 ATP6V1G1O75348 118 aa9.66□□□□□ -0.86
TRIM28-213ENST00000598355 C3orf79P0CE67 100 aa9.66□□□□□ -0.86
TRIM28-213ENST00000598355 TMEM126AQ9H061 195 aa9.66□□□□□ -0.86
TRIM28-213ENST00000598355 M0R378 163 aa9.65□□□□□ -0.86
TRIM28-213ENST00000598355 PRR26Q8N8Z3 221 aa9.65□□□□□ -0.86
TRIM28-213ENST00000598355 IGKV2D-26A0A0A0MRZ7 120 aa9.64□□□□□ -0.87
TRIM28-213ENST00000598355 LGALS3P17931 250 aaKnown RBP9.64□□□□□ -0.87
TRIM28-213ENST00000598355 BOD1L2Q8IYS8 172 aa9.64□□□□□ -0.87
TRIM28-213ENST00000598355 TMEM238C9JI98 176 aa9.63□□□□□ -0.87
TRIM28-213ENST00000598355 A0A0J9YXY3 114 aa9.61□□□□□ -0.87
TRIM28-213ENST00000598355 DAND5Q8N907 189 aa9.61□□□□□ -0.87
TRIM28-213ENST00000598355 SPRR1AP35321 89 aa9.6□□□□□ -0.87
TRIM28-213ENST00000598355 RPL13AP40429 203 aaKnown RBP9.6□□□□□ -0.87
TRIM28-213ENST00000598355 UBE2AP49459 152 aa9.6□□□□□ -0.87
TRIM28-213ENST00000598355 PRYO14603 147 aa9.59□□□□□ -0.87
TRIM28-213ENST00000598355 PRLHP81277 87 aa9.59□□□□□ -0.87
TRIM28-213ENST00000598355 TRBV10-2A0A0K0K1G8 114 aa9.58□□□□□ -0.88
TRIM28-213ENST00000598355 KRTAP4-16G5E9R7 235 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-213ENST00000598355 NCR3O14931 201 aa9.58□□□□□ -0.88
TRIM28-213ENST00000598355 KRTDAPP60985 99 aa9.58□□□□□ -0.88
TRIM28-213ENST00000598355 FAM19A1Q7Z5A9 133 aa9.58□□□□□ -0.88
TRIM28-213ENST00000598355 LITAFQ99732 161 aa9.58□□□□□ -0.88
TRIM28-213ENST00000598355 KCNQ1DNQ9H478 68 aa9.58□□□□□ -0.88
TRIM28-213ENST00000598355 A0A087X002 238 aa9.57□□□□□ -0.88
TRIM28-213ENST00000598355 NDUFC2O95298 119 aa9.57□□□□□ -0.88
TRIM28-213ENST00000598355 SOSTDC1Q6X4U4 206 aa9.57□□□□□ -0.88
TRIM28-213ENST00000598355 EIF4EBP3O60516 100 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-213ENST00000598355 TIMM17BO60830 172 aa9.56□□□□□ -0.88
TRIM28-213ENST00000598355 ADAMTSL4-AS1Q5T5F5 129 aa9.56□□□□□ -0.88
TRIM28-213ENST00000598355 LINC00337Q8N6G1 96 aa9.56□□□□□ -0.88
TRIM28-213ENST00000598355 SPANXB1Q9NS25 103 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-213ENST00000598355 TRBV10-3A0A0K0K1G6 114 aa9.55□□□□□ -0.88
TRIM28-213ENST00000598355 C20orf202A1L168 122 aa9.55□□□□□ -0.88
TRIM28-213ENST00000598355 HIST3H2BBQ8N257 126 aa9.55□□□□□ -0.88
TRIM28-213ENST00000598355 FAM229BQ4G0N7 80 aa9.54□□□□□ -0.88
TRIM28-213ENST00000598355 MIEN1Q9BRT3 115 aa9.54□□□□□ -0.88
TRIM28-213ENST00000598355 HIST1H2BLQ99880 126 aa9.53□□□□□ -0.88
TRIM28-213ENST00000598355 TTTY13Q9BZ97 58 aa9.53□□□□□ -0.88
TRIM28-213ENST00000598355 ZNF815PA8K554 130 aa9.52□□□□□ -0.89
TRIM28-213ENST00000598355 CRYGAP11844 174 aa9.52□□□□□ -0.89
TRIM28-213ENST00000598355 AKR1D1P51857 326 aa9.52□□□□□ -0.89
TRIM28-213ENST00000598355 ANKRD39Q53RE8 183 aa9.52□□□□□ -0.89
TRIM28-213ENST00000598355 IGLV6-57P01721 117 aa9.51□□□□□ -0.89
TRIM28-213ENST00000598355 KRTAP13-2Q52LG2 175 aa9.51□□□□□ -0.89
TRIM28-213ENST00000598355 DDTP30046 118 aa9.5□□□□□ -0.89
TRIM28-213ENST00000598355 LINC00308Q8TCZ7 52 aa9.49□□□□□ -0.89
TRIM28-213ENST00000598355 HIGD2AQ9BW72 106 aa9.49□□□□□ -0.89
TRIM28-213ENST00000598355 ANAPC11Q9NYG5 84 aa9.49□□□□□ -0.89
TRIM28-213ENST00000598355 LRP2P98164 4655 aa9.48□□□□□ -0.89
TRIM28-213ENST00000598355 NPC2P61916 151 aa9.48□□□□□ -0.89
TRIM28-213ENST00000598355 ATOH7Q8N100 152 aa9.48□□□□□ -0.89
TRIM28-213ENST00000598355 SPANXCQ9NY87 97 aa9.48□□□□□ -0.89
TRIM28-213ENST00000598355 SPRR4Q96PI1 79 aa9.47□□□□□ -0.89
TRIM28-213ENST00000598355 SPANXDQ9BXN6 97 aa9.47□□□□□ -0.89
TRIM28-213ENST00000598355 PPDPFQ9H3Y8 114 aa9.47□□□□□ -0.89
TRIM28-213ENST00000598355 ETDCA0A1B0GVM5 59 aa9.46□□□□□ -0.9
TRIM28-213ENST00000598355 B5MCH6 92 aa9.46□□□□□ -0.9
TRIM28-213ENST00000598355 S100A2P29034 98 aa9.46□□□□□ -0.9
TRIM28-213ENST00000598355 SNRPEP62304 92 aaKnown RBP9.46□□□□□ -0.9
TRIM28-213ENST00000598355 S100A12P80511 92 aa9.46□□□□□ -0.9
TRIM28-213ENST00000598355 TYMSOSQ8TAI1 123 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms