RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 FAM92AA1XBS5 289 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 FAM25AB3EWG3 89 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 FAM25CB3EWG5 89 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 FAM25GB3EWG6 89 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 PIN1P1O15428 100 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 NDUFB6O95139 128 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 CCL3L1P16619 93 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 SPINK9Q5DT21 86 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 S100A7L2Q5SY68 101 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 LSM10Q969L4 123 aaKnown RBP0.79□□□□□ -2.28
SCFD1-221ENST00000556534 SEC11CQ9BY50 192 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 AGPAT4-IT1Q9H0P7 198 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 HMCN2Q8NDA2 5059 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 FAT2Q9NYQ8 4349 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 USF3Q68DE3 2245 aa0.79□□□□□ -2.28
SCFD1-221ENST00000556534 SIPA1L3O60292 1781 aaPredicted RBP0.78□□□□□ -2.28
SCFD1-221ENST00000556534 A0A096LNT2 108 aa0.78□□□□□ -2.28
SCFD1-221ENST00000556534 ZNF137PP52743 207 aa0.78□□□□□ -2.28
SCFD1-221ENST00000556534 SPINK13Q1W4C9 94 aa0.78□□□□□ -2.28
SCFD1-221ENST00000556534 MEIG1Q5JSS6 88 aa0.78□□□□□ -2.28
SCFD1-221ENST00000556534 C20orf197Q8N268 126 aa0.78□□□□□ -2.28
SCFD1-221ENST00000556534 SNRNP25Q9BV90 132 aaKnown RBP0.78□□□□□ -2.28
SCFD1-221ENST00000556534 ROCK2O75116 1388 aaKnown RBP0.78□□□□□ -2.28
SCFD1-221ENST00000556534 WNK2Q9Y3S1 2297 aa0.77□□□□□ -2.29
SCFD1-221ENST00000556534 CLPSL1A2RUU4 121 aa0.77□□□□□ -2.29
SCFD1-221ENST00000556534 DLEU1O43261 78 aa0.77□□□□□ -2.29
SCFD1-221ENST00000556534 APODP05090 189 aa0.77□□□□□ -2.29
SCFD1-221ENST00000556534 PIPP12273 146 aaPredicted RBP0.77□□□□□ -2.29
SCFD1-221ENST00000556534 C6orf52Q5T4I8 152 aa0.77□□□□□ -2.29
SCFD1-221ENST00000556534 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.77□□□□□ -2.29
SCFD1-221ENST00000556534 BET1LQ9NYM9 111 aa0.77□□□□□ -2.29
SCFD1-221ENST00000556534 MYH8P13535 1937 aa0.77□□□□□ -2.29
SCFD1-221ENST00000556534 DNAH3Q8TD57 4116 aa0.77□□□□□ -2.29
SCFD1-221ENST00000556534 DNAH9Q9NYC9 4486 aa0.77□□□□□ -2.29
SCFD1-221ENST00000556534 SNCGO76070 127 aa0.76□□□□□ -2.29
SCFD1-221ENST00000556534 CBLN1P23435 193 aa0.76□□□□□ -2.29
SCFD1-221ENST00000556534 UBE2D1P51668 147 aa0.76□□□□□ -2.29
SCFD1-221ENST00000556534 FXYD6P3P58550 94 aa0.76□□□□□ -2.29
SCFD1-221ENST00000556534 KRTAP20-1Q3LI63 56 aa0.76□□□□□ -2.29
SCFD1-221ENST00000556534 RERGLQ9H628 205 aa0.76□□□□□ -2.29
SCFD1-221ENST00000556534 RPRMQ9NS64 109 aa0.76□□□□□ -2.29
SCFD1-221ENST00000556534 COA4Q9NYJ1 87 aa0.76□□□□□ -2.29
SCFD1-221ENST00000556534 SYNE2Q8WXH0 6885 aaKnown RBP0.76□□□□□ -2.29
SCFD1-221ENST00000556534 BTG2P78543 158 aa0.75□□□□□ -2.29
SCFD1-221ENST00000556534 RPL7L1Q6DKI1 246 aaKnown RBP0.75□□□□□ -2.29
SCFD1-221ENST00000556534 MYO7BQ6PIF6 2116 aa0.75□□□□□ -2.29
SCFD1-221ENST00000556534 COX7B2Q8TF08 81 aa0.75□□□□□ -2.29
SCFD1-221ENST00000556534 DSCR8Q96T75 97 aa0.75□□□□□ -2.29
SCFD1-221ENST00000556534 SERP1Q9Y6X1 66 aa0.75□□□□□ -2.29
SCFD1-221ENST00000556534 ALMS1Q8TCU4 4167 aa0.75□□□□□ -2.29
SCFD1-221ENST00000556534 LRP2P98164 4655 aa0.74□□□□□ -2.29
SCFD1-221ENST00000556534 STARD9Q9P2P6 4700 aa0.74□□□□□ -2.29
SCFD1-221ENST00000556534 MUC5BQ9HC84 5762 aaPredicted RBP0.74□□□□□ -2.29
SCFD1-221ENST00000556534 LINC00587B1AMM8 73 aa0.74□□□□□ -2.29
SCFD1-221ENST00000556534 CD52P31358 61 aa0.74□□□□□ -2.29
SCFD1-221ENST00000556534 SSBP1Q04837 148 aaKnown RBP0.74□□□□□ -2.29
SCFD1-221ENST00000556534 DEFB109BQ30KR1 87 aa0.74□□□□□ -2.29
SCFD1-221ENST00000556534 Q6AWC8 147 aa0.74□□□□□ -2.29
SCFD1-221ENST00000556534 Q8N8P6 123 aa0.74□□□□□ -2.29
SCFD1-221ENST00000556534 SPTSSBQ8NFR3 76 aa0.74□□□□□ -2.29
SCFD1-221ENST00000556534 C10orf95Q9H7T3 257 aa0.74□□□□□ -2.29
SCFD1-221ENST00000556534 DYNC1H1Q14204 4646 aaKnown RBP0.74□□□□□ -2.29
SCFD1-221ENST00000556534 RBAKDNA6NC62 111 aa0.73□□□□□ -2.29
SCFD1-221ENST00000556534 A6NIN4 97 aa0.73□□□□□ -2.29
SCFD1-221ENST00000556534 FGF7P21781 194 aa0.73□□□□□ -2.29
SCFD1-221ENST00000556534 LELP1Q5T871 98 aa0.73□□□□□ -2.29
SCFD1-221ENST00000556534 C4orf33Q8N1A6 199 aa0.73□□□□□ -2.29
SCFD1-221ENST00000556534 PPP1R1CQ8WVI7 109 aa0.73□□□□□ -2.29
SCFD1-221ENST00000556534 Q96NJ1 140 aa0.73□□□□□ -2.29
SCFD1-221ENST00000556534 APOBP04114 4563 aaKnown RBP0.73□□□□□ -2.29
SCFD1-221ENST00000556534 PDCD11Q14690 1871 aaKnown RBP0.72□□□□□ -2.29
SCFD1-221ENST00000556534 TRBV10-3A0A0K0K1G6 114 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 MCRIP1C9JLW8 97 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 IFNA17P01571 189 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 TFF3Q07654 80 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 INSL4Q14641 139 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 KRTAP19-3Q7Z4W3 81 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 COPS9Q8WXC6 57 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 C2orf88Q9BSF0 95 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 FAM103A1Q9BTL3 118 aaKnown RBP0.72□□□□□ -2.29
SCFD1-221ENST00000556534 NAA60Q9H7X0 242 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 U3KQA8 63 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 DNAH10Q8IVF4 4471 aa0.72□□□□□ -2.29
SCFD1-221ENST00000556534 DNAH6Q9C0G6 4158 aa0.71□□□□□ -2.3
SCFD1-221ENST00000556534 CCL8P80075 99 aa0.71□□□□□ -2.3
SCFD1-221ENST00000556534 RBM3P98179 157 aaKnown RBP0.71□□□□□ -2.3
SCFD1-221ENST00000556534 PP6455Q8WZ26 134 aa0.71□□□□□ -2.3
SCFD1-221ENST00000556534 SCN3BQ9NY72 215 aa0.71□□□□□ -2.3
SCFD1-221ENST00000556534 PKD1P98161 4303 aa0.7□□□□□ -2.3
SCFD1-221ENST00000556534 LRP1Q07954 4544 aaKnown RBP0.7□□□□□ -2.3
SCFD1-221ENST00000556534 VPS13BQ7Z7G8 4022 aa0.7□□□□□ -2.3
SCFD1-221ENST00000556534 EDDM3BP56851 147 aa0.7□□□□□ -2.3
SCFD1-221ENST00000556534 FAM74A4Q5TZK3 123 aa0.7□□□□□ -2.3
SCFD1-221ENST00000556534 ZNF818PQ6ZRF7 136 aa0.7□□□□□ -2.3
SCFD1-221ENST00000556534 V9GYV3 84 aa0.7□□□□□ -2.3
SCFD1-221ENST00000556534 DNAJC13O75165 2243 aa0.7□□□□□ -2.3
SCFD1-221ENST00000556534 KMT2DO14686 5537 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 PLECQ15149 4684 aaKnown RBP0.69□□□□□ -2.3
SCFD1-221ENST00000556534 DNAH2Q9P225 4427 aa0.69□□□□□ -2.3
SCFD1-221ENST00000556534 TRBV7-1A0A0A6YYK4 115 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms