RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 PMCHL2Q9BQD1 86 aa8.34□□□□□ -1.07
SHMT2-219ENST00000555563 GAGE10A6NGK3 116 aa8.33□□□□□ -1.08
SHMT2-219ENST00000555563 NKAPP1Q8N9T2 125 aa8.33□□□□□ -1.08
SHMT2-219ENST00000555563 LINC00167Q96N53 147 aa8.33□□□□□ -1.08
SHMT2-219ENST00000555563 RPL37AP8A6NKH3 93 aa8.32□□□□□ -1.08
SHMT2-219ENST00000555563 H0Y9J4 135 aa8.32□□□□□ -1.08
SHMT2-219ENST00000555563 DPM2O94777 84 aa8.31□□□□□ -1.08
SHMT2-219ENST00000555563 VPREB1P12018 145 aa8.31□□□□□ -1.08
SHMT2-219ENST00000555563 LINC00158P58513 81 aa8.31□□□□□ -1.08
SHMT2-219ENST00000555563 TSPEAR-AS2P59090 65 aa8.31□□□□□ -1.08
SHMT2-219ENST00000555563 Q8NDZ9 215 aa8.31□□□□□ -1.08
SHMT2-219ENST00000555563 MAP1LC3CQ9BXW4 147 aa8.31□□□□□ -1.08
SHMT2-219ENST00000555563 NDUFA12Q9UI09 145 aa8.31□□□□□ -1.08
SHMT2-219ENST00000555563 A0A0U1RRA0 63 aa8.3□□□□□ -1.08
SHMT2-219ENST00000555563 BCE1O60756 84 aa8.29□□□□□ -1.08
SHMT2-219ENST00000555563 IGKCP01834 107 aa8.29□□□□□ -1.08
SHMT2-219ENST00000555563 SMIM13P0DJ93 91 aa8.29□□□□□ -1.08
SHMT2-219ENST00000555563 KRTAP10-8P60410 259 aa8.29□□□□□ -1.08
SHMT2-219ENST00000555563 HERV-K104P63124 156 aa8.29□□□□□ -1.08
SHMT2-219ENST00000555563 MEIG1Q5JSS6 88 aa8.29□□□□□ -1.08
SHMT2-219ENST00000555563 IGKV2-28A0A075B6P5 120 aa8.28□□□□□ -1.08
SHMT2-219ENST00000555563 LEPROTO15243 131 aa8.28□□□□□ -1.08
SHMT2-219ENST00000555563 ZNF861PO60384 105 aa8.28□□□□□ -1.08
SHMT2-219ENST00000555563 IGKV2D-28P01615 120 aa8.28□□□□□ -1.08
SHMT2-219ENST00000555563 HERVK_113P61574 105 aa8.28□□□□□ -1.08
SHMT2-219ENST00000555563 PLEKHB2Q96CS7 222 aa8.28□□□□□ -1.08
SHMT2-219ENST00000555563 MYMXA0A1B0GTQ4 84 aa8.27□□□□□ -1.09
SHMT2-219ENST00000555563 SYS1-DBNDD2H3BUS1 97 aa8.27□□□□□ -1.09
SHMT2-219ENST00000555563 KRTAP1-4P0C5Y4 121 aa8.27□□□□□ -1.09
SHMT2-219ENST00000555563 RPL24P83731 157 aaKnown RBP8.27□□□□□ -1.09
SHMT2-219ENST00000555563 J3QQQ9 107 aa8.26□□□□□ -1.09
SHMT2-219ENST00000555563 COA6Q5JTJ3 125 aaKnown RBP8.26□□□□□ -1.09
SHMT2-219ENST00000555563 MIR7-3HGQ8N6C7 128 aa8.26□□□□□ -1.09
SHMT2-219ENST00000555563 ATP6V1G1O75348 118 aa8.25□□□□□ -1.09
SHMT2-219ENST00000555563 RPL28P46779 137 aaKnown RBP8.25□□□□□ -1.09
SHMT2-219ENST00000555563 PRR26Q8N8Z3 221 aa8.25□□□□□ -1.09
SHMT2-219ENST00000555563 IGLV1-50A0A075B6I6 118 aa8.24□□□□□ -1.09
SHMT2-219ENST00000555563 LGALS3P17931 250 aaKnown RBP8.24□□□□□ -1.09
SHMT2-219ENST00000555563 LINC01545Q5VT33 79 aa8.24□□□□□ -1.09
SHMT2-219ENST00000555563 SVIPQ8NHG7 77 aa8.24□□□□□ -1.09
SHMT2-219ENST00000555563 LINC00587B1AMM8 73 aa8.23□□□□□ -1.09
SHMT2-219ENST00000555563 TMEM238C9JI98 176 aa8.23□□□□□ -1.09
SHMT2-219ENST00000555563 NMUP48645 174 aa8.23□□□□□ -1.09
SHMT2-219ENST00000555563 UBE2AP49459 152 aa8.23□□□□□ -1.09
SHMT2-219ENST00000555563 KRTAP13-1Q8IUC0 172 aa8.23□□□□□ -1.09
SHMT2-219ENST00000555563 BOD1L2Q8IYS8 172 aa8.23□□□□□ -1.09
SHMT2-219ENST00000555563 E9PLD3 99 aa8.22□□□□□ -1.09
SHMT2-219ENST00000555563 PET117Q6UWS5 81 aa8.22□□□□□ -1.09
SHMT2-219ENST00000555563 DAND5Q8N907 189 aa8.22□□□□□ -1.09
SHMT2-219ENST00000555563 TMEM126AQ9H061 195 aa8.22□□□□□ -1.09
SHMT2-219ENST00000555563 TNXBP22105 4242 aa8.22□□□□□ -1.09
SHMT2-219ENST00000555563 M0R378 163 aa8.21□□□□□ -1.1
SHMT2-219ENST00000555563 C3orf79P0CE67 100 aa8.21□□□□□ -1.1
SHMT2-219ENST00000555563 S100A1P23297 94 aa8.21□□□□□ -1.1
SHMT2-219ENST00000555563 PRLHP81277 87 aa8.21□□□□□ -1.1
SHMT2-219ENST00000555563 NCR3O14931 201 aa8.2□□□□□ -1.1
SHMT2-219ENST00000555563 KRTDAPP60985 99 aa8.19□□□□□ -1.1
SHMT2-219ENST00000555563 FAM19A1Q7Z5A9 133 aa8.19□□□□□ -1.1
SHMT2-219ENST00000555563 KRTAP3-3Q9BYR6 98 aa8.18□□□□□ -1.1
SHMT2-219ENST00000555563 KRTAP3-2Q9BYR7 98 aa8.18□□□□□ -1.1
SHMT2-219ENST00000555563 IGKV2D-26A0A0A0MRZ7 120 aa8.17□□□□□ -1.1
SHMT2-219ENST00000555563 A0A0J9YXY3 114 aa8.17□□□□□ -1.1
SHMT2-219ENST00000555563 RPL13AP40429 203 aaKnown RBP8.17□□□□□ -1.1
SHMT2-219ENST00000555563 LOC107984156A0A0G2JMH3 177 aa8.16□□□□□ -1.1
SHMT2-219ENST00000555563 ARL17AQ8IVW1 177 aa8.16□□□□□ -1.1
SHMT2-219ENST00000555563 A0A087X002 238 aa8.15□□□□□ -1.1
SHMT2-219ENST00000555563 TRBV10-3A0A0K0K1G6 114 aa8.15□□□□□ -1.1
SHMT2-219ENST00000555563 PRYO14603 147 aa8.15□□□□□ -1.1
SHMT2-219ENST00000555563 MIEN1Q9BRT3 115 aa8.15□□□□□ -1.1
SHMT2-219ENST00000555563 RNF213Q63HN8 5207 aa8.15□□□□□ -1.11
SHMT2-219ENST00000555563 C20orf202A1L168 122 aa8.14□□□□□ -1.11
SHMT2-219ENST00000555563 ADAMTSL4-AS1Q5T5F5 129 aa8.14□□□□□ -1.11
SHMT2-219ENST00000555563 LCE2DQ5TA82 110 aaPredicted RBP8.14□□□□□ -1.11
SHMT2-219ENST00000555563 SOSTDC1Q6X4U4 206 aa8.14□□□□□ -1.11
SHMT2-219ENST00000555563 ANAPC11Q9NYG5 84 aa8.14□□□□□ -1.11
SHMT2-219ENST00000555563 ZNF815PA8K554 130 aa8.13□□□□□ -1.11
SHMT2-219ENST00000555563 EIF4EBP3O60516 100 aaPredicted RBP8.13□□□□□ -1.11
SHMT2-219ENST00000555563 NPC2P61916 151 aa8.13□□□□□ -1.11
SHMT2-219ENST00000555563 TTTY13Q9BZ97 58 aa8.13□□□□□ -1.11
SHMT2-219ENST00000555563 KCNQ1DNQ9H478 68 aa8.13□□□□□ -1.11
SHMT2-219ENST00000555563 SPANXB1Q9NS25 103 aaPredicted RBP8.13□□□□□ -1.11
SHMT2-219ENST00000555563 TRBV10-2A0A0K0K1G8 114 aa8.12□□□□□ -1.11
SHMT2-219ENST00000555563 SPRR1AP35321 89 aa8.12□□□□□ -1.11
SHMT2-219ENST00000555563 ATOH7Q8N100 152 aa8.12□□□□□ -1.11
SHMT2-219ENST00000555563 LITAFQ99732 161 aa8.12□□□□□ -1.11
SHMT2-219ENST00000555563 HIGD2AQ9BW72 106 aa8.12□□□□□ -1.11
SHMT2-219ENST00000555563 LRP2P98164 4655 aa8.12□□□□□ -1.11
SHMT2-219ENST00000555563 TIMM17BO60830 172 aa8.11□□□□□ -1.11
SHMT2-219ENST00000555563 NDUFC2O95298 119 aa8.11□□□□□ -1.11
SHMT2-219ENST00000555563 CRYGAP11844 174 aa8.11□□□□□ -1.11
SHMT2-219ENST00000555563 HIST3H2BBQ8N257 126 aa8.11□□□□□ -1.11
SHMT2-219ENST00000555563 KRTAP4-16G5E9R7 235 aaPredicted RBP8.1□□□□□ -1.11
SHMT2-219ENST00000555563 DDTP30046 118 aa8.1□□□□□ -1.11
SHMT2-219ENST00000555563 ANKRD39Q53RE8 183 aa8.1□□□□□ -1.11
SHMT2-219ENST00000555563 LINC00337Q8N6G1 96 aa8.1□□□□□ -1.11
SHMT2-219ENST00000555563 HIST1H2BLQ99880 126 aa8.1□□□□□ -1.11
SHMT2-219ENST00000555563 ETDCA0A1B0GVM5 59 aa8.09□□□□□ -1.11
SHMT2-219ENST00000555563 FAM229BQ4G0N7 80 aa8.09□□□□□ -1.11
SHMT2-219ENST00000555563 KRTAP13-2Q52LG2 175 aa8.09□□□□□ -1.11
SHMT2-219ENST00000555563 S100A2P29034 98 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms