RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 Q8NDZ9 215 aa14.34□□□□□ -0.11
VPS28-205ENST00000526204 LINC00526Q96FQ7 95 aa14.31□□□□□ -0.12
VPS28-205ENST00000526204 F8P00451 2351 aa14.31□□□□□ -0.12
VPS28-205ENST00000526204 CCKP06307 115 aa14.3□□□□□ -0.12
VPS28-205ENST00000526204 LINC00846Q9NV44 126 aa14.3□□□□□ -0.12
VPS28-205ENST00000526204 LINC00575Q6W349 94 aa14.3□□□□□ -0.12
VPS28-205ENST00000526204 IGLV6-57P01721 117 aa14.28□□□□□ -0.12
VPS28-205ENST00000526204 KPRPQ5T749 579 aaPredicted RBP14.27□□□□□ -0.12
VPS28-205ENST00000526204 Q6JHZ5 121 aa14.27□□□□□ -0.12
VPS28-205ENST00000526204 TEP1Q99973 2627 aaKnown RBP14.27□□□□□ -0.12
VPS28-205ENST00000526204 ATRQ13535 2644 aa14.27□□□□□ -0.13
VPS28-205ENST00000526204 C6orf48Q9UBA6 75 aa14.26□□□□□ -0.13
VPS28-205ENST00000526204 hADV29S1A0JD25 119 aa14.25□□□□□ -0.13
VPS28-205ENST00000526204 RPL18AQ02543 176 aaKnown RBP14.25□□□□□ -0.13
VPS28-205ENST00000526204 OXLD1Q5BKU9 147 aa14.25□□□□□ -0.13
VPS28-205ENST00000526204 SS18L2Q9UHA2 77 aa14.24□□□□□ -0.13
VPS28-205ENST00000526204 WFDC10BQ8IUB3 73 aa14.23□□□□□ -0.13
VPS28-205ENST00000526204 ZNF561-AS1K7EIQ3 104 aa14.23□□□□□ -0.13
VPS28-205ENST00000526204 KRTAP10-11P60412 298 aa14.22□□□□□ -0.13
VPS28-205ENST00000526204 RETNQ9HD89 108 aa14.22□□□□□ -0.13
VPS28-205ENST00000526204 H3BQ85 93 aa14.21□□□□□ -0.13
VPS28-205ENST00000526204 HIST1H4AP62805 103 aaKnown RBP14.21□□□□□ -0.13
VPS28-205ENST00000526204 Q6ZTC4 211 aa14.21□□□□□ -0.13
VPS28-205ENST00000526204 CAMK2N2Q96S95 79 aa14.2□□□□□ -0.14
VPS28-205ENST00000526204 EGFEM1PQ0D2K5 195 aa14.18□□□□□ -0.14
VPS28-205ENST00000526204 KRTAP26-1Q6PEX3 210 aa14.18□□□□□ -0.14
VPS28-205ENST00000526204 IGKV3D-7A0A0C4DH55 119 aa14.18□□□□□ -0.14
VPS28-205ENST00000526204 XAGE1AQ9HD64 81 aa14.18□□□□□ -0.14
VPS28-205ENST00000526204 TRRAPQ9Y4A5 3859 aa14.17□□□□□ -0.14
VPS28-205ENST00000526204 TRAV23DV6A0A075B6W5 121 aa14.17□□□□□ -0.14
VPS28-205ENST00000526204 TRBV10-3A0A0K0K1G6 114 aa14.17□□□□□ -0.14
VPS28-205ENST00000526204 ATOX1O00244 68 aa14.17□□□□□ -0.14
VPS28-205ENST00000526204 DIRC1Q969H9 104 aa14.17□□□□□ -0.14
VPS28-205ENST00000526204 UQCRQO14949 82 aa14.16□□□□□ -0.14
VPS28-205ENST00000526204 HIGD2BQ4VC39 106 aa14.16□□□□□ -0.14
VPS28-205ENST00000526204 C3orf22Q8N5N4 141 aa14.16□□□□□ -0.14
VPS28-205ENST00000526204 RBM3P98179 157 aaKnown RBP14.15□□□□□ -0.14
VPS28-205ENST00000526204 ATP5EP2Q5VTU8 51 aa14.15□□□□□ -0.14
VPS28-205ENST00000526204 BAHCC1Q9P281 2608 aa14.15□□□□□ -0.14
VPS28-205ENST00000526204 ESRGQ1W209 222 aa14.15□□□□□ -0.14
VPS28-205ENST00000526204 C2orf48Q96LS8 159 aa14.15□□□□□ -0.14
VPS28-205ENST00000526204 LOC110117498A0A087WWA1 95 aa14.12□□□□□ -0.15
VPS28-205ENST00000526204 TRBV7-6A0A0J9YX20 115 aa14.12□□□□□ -0.15
VPS28-205ENST00000526204 ZNF73O43830 326 aaPredicted RBP14.12□□□□□ -0.15
VPS28-205ENST00000526204 LAMTOR3Q9UHA4 124 aa14.12□□□□□ -0.15
VPS28-205ENST00000526204 F8WDY8 70 aa14.12□□□□□ -0.15
VPS28-205ENST00000526204 LINC01556Q5JQF7 62 aa14.12□□□□□ -0.15
VPS28-205ENST00000526204 Q6ZQY7 126 aa14.12□□□□□ -0.15
VPS28-205ENST00000526204 C15orf56Q8N910 161 aa14.12□□□□□ -0.15
VPS28-205ENST00000526204 C1orf43Q9BWL3 253 aa14.12□□□□□ -0.15
VPS28-205ENST00000526204 GHRHP01286 108 aa14.11□□□□□ -0.15
VPS28-205ENST00000526204 VPREB1P12018 145 aa14.11□□□□□ -0.15
VPS28-205ENST00000526204 NDUFC2-KCTD14E9PQ53 114 aa14.11□□□□□ -0.15
VPS28-205ENST00000526204 Q6ZQT0 140 aa14.11□□□□□ -0.15
VPS28-205ENST00000526204 Q6ZRU5 148 aa14.11□□□□□ -0.15
VPS28-205ENST00000526204 UBL5Q9BZL1 73 aa14.11□□□□□ -0.15
VPS28-205ENST00000526204 COX7CP15954 63 aa14.1□□□□□ -0.15
VPS28-205ENST00000526204 DEFB131BA0A096LNP1 70 aa14.09□□□□□ -0.15
VPS28-205ENST00000526204 M0R378 163 aa14.09□□□□□ -0.15
VPS28-205ENST00000526204 COX7BP24311 80 aa14.09□□□□□ -0.15
VPS28-205ENST00000526204 C9orf153Q5TBE3 101 aa14.09□□□□□ -0.15
VPS28-205ENST00000526204 PDE6GP18545 87 aa14.09□□□□□ -0.15
VPS28-205ENST00000526204 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP14.09□□□□□ -0.15
VPS28-205ENST00000526204 C11orf45Q8TAV5 145 aa14.08□□□□□ -0.16
VPS28-205ENST00000526204 ELOF1P60002 83 aaKnown RBP14.08□□□□□ -0.16
VPS28-205ENST00000526204 C3orf56Q8N813 242 aa14.07□□□□□ -0.16
VPS28-205ENST00000526204 DSCR8Q96T75 97 aa14.07□□□□□ -0.16
VPS28-205ENST00000526204 KRTAP24-1Q3LI83 254 aa14.06□□□□□ -0.16
VPS28-205ENST00000526204 A0A087WVE0 104 aa14.05□□□□□ -0.16
VPS28-205ENST00000526204 FBN1P35555 2871 aaKnown RBP14.05□□□□□ -0.16
VPS28-205ENST00000526204 IGKV2D-24A0A075B6R9 120 aa14.04□□□□□ -0.16
VPS28-205ENST00000526204 USP17L23D6RBM5 183 aa14.02□□□□□ -0.16
VPS28-205ENST00000526204 CRYGAP11844 174 aa14□□□□□ -0.17
VPS28-205ENST00000526204 SYCNQ0VAF6 134 aa14□□□□□ -0.17
VPS28-205ENST00000526204 DNAH10OSP0CZ25 163 aa14□□□□□ -0.17
VPS28-205ENST00000526204 Q6ZRP5 223 aa14□□□□□ -0.17
VPS28-205ENST00000526204 SERP2Q8N6R1 65 aa14□□□□□ -0.17
VPS28-205ENST00000526204 LINC00528Q8N1L1 170 aa13.97□□□□□ -0.17
VPS28-205ENST00000526204 STAB1Q9NY15 2570 aa13.96□□□□□ -0.18
VPS28-205ENST00000526204 TRBV7-4A0A0J9YYF1 115 aa13.95□□□□□ -0.18
VPS28-205ENST00000526204 FAM19A1Q7Z5A9 133 aa13.94□□□□□ -0.18
VPS28-205ENST00000526204 TRAV10A0A0B4J240 114 aa13.93□□□□□ -0.18
VPS28-205ENST00000526204 M0R2N4 97 aa13.93□□□□□ -0.18
VPS28-205ENST00000526204 UPK3BQ9BT76 320 aa13.93□□□□□ -0.18
VPS28-205ENST00000526204 Q6ZVQ6 151 aa13.92□□□□□ -0.18
VPS28-205ENST00000526204 NKAPP1Q8N9T2 125 aa13.91□□□□□ -0.18
VPS28-205ENST00000526204 PKD1L1Q8TDX9 2849 aa13.91□□□□□ -0.18
VPS28-205ENST00000526204 TLX1NBP0CAT3 122 aa13.9□□□□□ -0.18
VPS28-205ENST00000526204 LINC01547P58512 204 aaPredicted RBP13.9□□□□□ -0.18
VPS28-205ENST00000526204 KCNQ1DNQ9H478 68 aa13.9□□□□□ -0.18
VPS28-205ENST00000526204 MAST4O15021 2626 aa13.9□□□□□ -0.19
VPS28-205ENST00000526204 CXCL6P80162 114 aa13.88□□□□□ -0.19
VPS28-205ENST00000526204 SMIM20Q8N5G0 67 aa13.88□□□□□ -0.19
VPS28-205ENST00000526204 HAMPP81172 84 aa13.88□□□□□ -0.19
VPS28-205ENST00000526204 PLA2G2DQ9UNK4 145 aa13.87□□□□□ -0.19
VPS28-205ENST00000526204 LINC00588Q9Y4M8 146 aa13.87□□□□□ -0.19
VPS28-205ENST00000526204 MRAPQ8TCY5 172 aa13.86□□□□□ -0.19
VPS28-205ENST00000526204 BCE1O60756 84 aa13.85□□□□□ -0.19
VPS28-205ENST00000526204 C7orf33Q8WU49 177 aa13.85□□□□□ -0.19
VPS28-205ENST00000526204 TENM3Q9P273 2699 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 137.6 ms