RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CRYGAP11844 174 aa6.06□□□□□ -1.44
LIMCH1-209ENST00000509277 COL7A1Q02388 2944 aa6.06□□□□□ -1.44
LIMCH1-209ENST00000509277 IGHV4-4A0A075B6R2 117 aa6.06□□□□□ -1.44
LIMCH1-209ENST00000509277 TRBV27A0A0K0K1C4 114 aa6.06□□□□□ -1.44
LIMCH1-209ENST00000509277 MED14OSP0DP75 135 aa6.06□□□□□ -1.44
LIMCH1-209ENST00000509277 PRR3P79522 188 aaKnown RBP6.06□□□□□ -1.44
LIMCH1-209ENST00000509277 PRR4Q16378 134 aa6.06□□□□□ -1.44
LIMCH1-209ENST00000509277 K7EQD1 137 aa6.05□□□□□ -1.44
LIMCH1-209ENST00000509277 SEC61GP60059 68 aa6.05□□□□□ -1.44
LIMCH1-209ENST00000509277 C1orf195Q5TG92 126 aa6.05□□□□□ -1.44
LIMCH1-209ENST00000509277 UPK3BQ9BT76 320 aa6.05□□□□□ -1.44
LIMCH1-209ENST00000509277 F8WEM9 126 aa6.05□□□□□ -1.44
LIMCH1-209ENST00000509277 RPL28P46779 137 aaKnown RBP6.05□□□□□ -1.44
LIMCH1-209ENST00000509277 TIMM17BO60830 172 aa6.05□□□□□ -1.44
LIMCH1-209ENST00000509277 LINC00315P59091 139 aa6.05□□□□□ -1.44
LIMCH1-209ENST00000509277 LINC01561Q8N1V8 128 aa6.05□□□□□ -1.44
LIMCH1-209ENST00000509277 LITAFQ99732 161 aa6.05□□□□□ -1.44
LIMCH1-209ENST00000509277 LYRM9A8MSI8 78 aa6.04□□□□□ -1.44
LIMCH1-209ENST00000509277 IL17DQ8TAD2 202 aa6.04□□□□□ -1.44
LIMCH1-209ENST00000509277 UBL5Q9BZL1 73 aa6.04□□□□□ -1.44
LIMCH1-209ENST00000509277 CMYA5Q8N3K9 4069 aa6.04□□□□□ -1.44
LIMCH1-209ENST00000509277 KIF25-AS1Q9Y6Z4 181 aa6.04□□□□□ -1.44
LIMCH1-209ENST00000509277 PRO0255Q9UI72 69 aa6.04□□□□□ -1.44
LIMCH1-209ENST00000509277 SMIM11BQ8TCY0 68 aa6.03□□□□□ -1.44
LIMCH1-209ENST00000509277 A0A087WZ39 114 aa6.03□□□□□ -1.44
LIMCH1-209ENST00000509277 FBN3Q75N90 2809 aa6.03□□□□□ -1.44
LIMCH1-209ENST00000509277 XCL1P47992 114 aa6.02□□□□□ -1.44
LIMCH1-209ENST00000509277 B9D2Q9BPU9 175 aa6.02□□□□□ -1.44
LIMCH1-209ENST00000509277 Q5XG85 94 aa6.02□□□□□ -1.45
LIMCH1-209ENST00000509277 C6orf226Q5I0X4 101 aa6.02□□□□□ -1.45
LIMCH1-209ENST00000509277 COX7B2Q8TF08 81 aa6.02□□□□□ -1.45
LIMCH1-209ENST00000509277 TM2D3Q9BRN9 247 aa6.02□□□□□ -1.45
LIMCH1-209ENST00000509277 PRO0628Q9UI54 55 aa6.02□□□□□ -1.45
LIMCH1-209ENST00000509277 KPRPQ5T749 579 aaPredicted RBP6.01□□□□□ -1.45
LIMCH1-209ENST00000509277 LINC00337Q8N6G1 96 aa6.01□□□□□ -1.45
LIMCH1-209ENST00000509277 SPANXDQ9BXN6 97 aa6.01□□□□□ -1.45
LIMCH1-209ENST00000509277 SPANXCQ9NY87 97 aa6.01□□□□□ -1.45
LIMCH1-209ENST00000509277 ORMDL1Q9P0S3 153 aa6□□□□□ -1.45
LIMCH1-209ENST00000509277 MRPS36P82909 103 aaKnown RBP6□□□□□ -1.45
LIMCH1-209ENST00000509277 TRAV13-2A0A0B4J235 113 aa6□□□□□ -1.45
LIMCH1-209ENST00000509277 UBE2DNLQ8IWF7 75 aa6□□□□□ -1.45
LIMCH1-209ENST00000509277 Q8N9L7 120 aa6□□□□□ -1.45
LIMCH1-209ENST00000509277 Q8N3U1 123 aa5.99□□□□□ -1.45
LIMCH1-209ENST00000509277 COPS9Q8WXC6 57 aa5.99□□□□□ -1.45
LIMCH1-209ENST00000509277 IGLV10-54A0A075B6I4 117 aa5.98□□□□□ -1.45
LIMCH1-209ENST00000509277 RPS28P62857 69 aaKnown RBP5.98□□□□□ -1.45
LIMCH1-209ENST00000509277 UBE2D4Q9Y2X8 147 aa5.98□□□□□ -1.45
LIMCH1-209ENST00000509277 TRBV6-4A0A1B0GX49 114 aa5.98□□□□□ -1.45
LIMCH1-209ENST00000509277 TRAV10A0A0B4J240 114 aa5.97□□□□□ -1.45
LIMCH1-209ENST00000509277 PSPHP1O15172 72 aa5.97□□□□□ -1.45
LIMCH1-209ENST00000509277 NDUFA1O15239 70 aa5.97□□□□□ -1.45
LIMCH1-209ENST00000509277 LINC00242Q5T6M2 205 aa5.97□□□□□ -1.45
LIMCH1-209ENST00000509277 KRTAP21-3Q3LHN1 58 aa5.97□□□□□ -1.45
LIMCH1-209ENST00000509277 ANGP03950 147 aaKnown RBP5.96□□□□□ -1.45
LIMCH1-209ENST00000509277 Q6JHZ5 121 aa5.95□□□□□ -1.46
LIMCH1-209ENST00000509277 TRBV7-6A0A0J9YX20 115 aa5.95□□□□□ -1.46
LIMCH1-209ENST00000509277 TRBV10-1A0A0K0K1A3 114 aa5.95□□□□□ -1.46
LIMCH1-209ENST00000509277 SMIM1B2RUZ4 78 aa5.95□□□□□ -1.46
LIMCH1-209ENST00000509277 NTM-AS1Q6ZSK4 140 aa5.95□□□□□ -1.46
LIMCH1-209ENST00000509277 TRBV6-5A0A0K0K1A5 114 aa5.95□□□□□ -1.46
LIMCH1-209ENST00000509277 M0R2N4 97 aa5.95□□□□□ -1.46
LIMCH1-209ENST00000509277 NDUFC2O95298 119 aa5.95□□□□□ -1.46
LIMCH1-209ENST00000509277 CCL18P55774 89 aa5.95□□□□□ -1.46
LIMCH1-209ENST00000509277 SPTSSBQ8NFR3 76 aa5.95□□□□□ -1.46
LIMCH1-209ENST00000509277 KLK12Q9UKR0 248 aa5.94□□□□□ -1.46
LIMCH1-209ENST00000509277 WFDC10BQ8IUB3 73 aa5.94□□□□□ -1.46
LIMCH1-209ENST00000509277 CHCHD7Q9BUK0 85 aa5.94□□□□□ -1.46
LIMCH1-209ENST00000509277 TRBV6-8A0A0A6YYG3 113 aa5.94□□□□□ -1.46
LIMCH1-209ENST00000509277 PRKDCP78527 4128 aaKnown RBP5.94□□□□□ -1.46
LIMCH1-209ENST00000509277 NDUFC2-KCTD14E9PQ53 114 aa5.93□□□□□ -1.46
LIMCH1-209ENST00000509277 SMIM26A0A096LP01 95 aa5.93□□□□□ -1.46
LIMCH1-209ENST00000509277 ESRGQ1W209 222 aa5.93□□□□□ -1.46
LIMCH1-209ENST00000509277 C6orf99Q4VX62 202 aa5.93□□□□□ -1.46
LIMCH1-209ENST00000509277 C9orf116Q5BN46 136 aaPredicted RBP5.93□□□□□ -1.46
LIMCH1-209ENST00000509277 SERP1Q9Y6X1 66 aa5.93□□□□□ -1.46
LIMCH1-209ENST00000509277 IGLV4-60A0A075B6I1 120 aa5.92□□□□□ -1.46
LIMCH1-209ENST00000509277 LINC00612Q8N6U2 182 aa5.92□□□□□ -1.46
LIMCH1-209ENST00000509277 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.92□□□□□ -1.46
LIMCH1-209ENST00000509277 LYPD5Q6UWN5 251 aa5.91□□□□□ -1.46
LIMCH1-209ENST00000509277 LINC00269Q8N2A0 174 aa5.91□□□□□ -1.46
LIMCH1-209ENST00000509277 H0YGX0 51 aa5.91□□□□□ -1.46
LIMCH1-209ENST00000509277 IGKV2-28A0A075B6P5 120 aa5.91□□□□□ -1.46
LIMCH1-209ENST00000509277 LY6G6CO95867 125 aa5.91□□□□□ -1.46
LIMCH1-209ENST00000509277 IGKV2D-28P01615 120 aa5.91□□□□□ -1.46
LIMCH1-209ENST00000509277 CCKP06307 115 aa5.91□□□□□ -1.46
LIMCH1-209ENST00000509277 DEFB105AQ8NG35 78 aa5.91□□□□□ -1.46
LIMCH1-209ENST00000509277 F8WDY8 70 aa5.9□□□□□ -1.46
LIMCH1-209ENST00000509277 H7BZZ5 65 aa5.9□□□□□ -1.46
LIMCH1-209ENST00000509277 C22orf24Q9Y442 160 aa5.9□□□□□ -1.46
LIMCH1-209ENST00000509277 C3orf84H3BNL1 204 aa5.9□□□□□ -1.47
LIMCH1-209ENST00000509277 FP248Q71RG6 208 aaPredicted RBP5.9□□□□□ -1.47
LIMCH1-209ENST00000509277 HUWE1Q7Z6Z7 4374 aaKnown RBP5.89□□□□□ -1.47
LIMCH1-209ENST00000509277 IGKV2D-24A0A075B6R9 120 aa5.89□□□□□ -1.47
LIMCH1-209ENST00000509277 FAM229BQ4G0N7 80 aa5.88□□□□□ -1.47
LIMCH1-209ENST00000509277 Q6ZQY7 126 aa5.88□□□□□ -1.47
LIMCH1-209ENST00000509277 MUC7Q8TAX7 377 aa5.88□□□□□ -1.47
LIMCH1-209ENST00000509277 FAM104AQ969W3 186 aa5.88□□□□□ -1.47
LIMCH1-209ENST00000509277 LINC00588Q9Y4M8 146 aa5.88□□□□□ -1.47
LIMCH1-209ENST00000509277 LELP1Q5T871 98 aa5.87□□□□□ -1.47
LIMCH1-209ENST00000509277 FUSP35637 526 aaKnown RBP eCLIP5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms