RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 J3QL48 77 aa5□□□□□ -1.61
LIMCH1-207ENST00000508466 DEFB105AQ8NG35 78 aa5□□□□□ -1.61
LIMCH1-207ENST00000508466 XAGE1AQ9HD64 81 aa5□□□□□ -1.61
LIMCH1-207ENST00000508466 HIVEP1P15822 2718 aa5□□□□□ -1.61
LIMCH1-207ENST00000508466 ZNF469Q96JG9 3925 aaPredicted RBP5□□□□□ -1.61
LIMCH1-207ENST00000508466 TRBV7-4A0A0J9YYF1 115 aa5□□□□□ -1.61
LIMCH1-207ENST00000508466 K7EQD1 137 aa5□□□□□ -1.61
LIMCH1-207ENST00000508466 DEFB130BP0DP73 79 aa5□□□□□ -1.61
LIMCH1-207ENST00000508466 DEFB130AP0DP74 79 aa5□□□□□ -1.61
LIMCH1-207ENST00000508466 ESRGQ1W209 222 aa5□□□□□ -1.61
LIMCH1-207ENST00000508466 OVOL2Q9BRP0 275 aa5□□□□□ -1.61
LIMCH1-207ENST00000508466 A8MUN3 132 aa4.99□□□□□ -1.61
LIMCH1-207ENST00000508466 CD164L2Q6UWJ8 174 aa4.99□□□□□ -1.61
LIMCH1-207ENST00000508466 SRRM2Q9UQ35 2752 aaKnown RBP4.99□□□□□ -1.61
LIMCH1-207ENST00000508466 IGHV3OR16-9A0A0B4J2B5 98 aa4.98□□□□□ -1.61
LIMCH1-207ENST00000508466 IGHV4-61A0A0C4DH41 118 aa4.98□□□□□ -1.61
LIMCH1-207ENST00000508466 Q6ZRP5 223 aa4.98□□□□□ -1.61
LIMCH1-207ENST00000508466 TRGV4A0A0C4DH28 118 aa4.98□□□□□ -1.61
LIMCH1-207ENST00000508466 VWFP04275 2813 aa4.97□□□□□ -1.61
LIMCH1-207ENST00000508466 PRYO14603 147 aa4.97□□□□□ -1.61
LIMCH1-207ENST00000508466 Q6ZTC4 211 aa4.97□□□□□ -1.61
LIMCH1-207ENST00000508466 FBN1P35555 2871 aaKnown RBP4.97□□□□□ -1.61
LIMCH1-207ENST00000508466 IBA57-AS1B1ANH7 110 aa4.97□□□□□ -1.61
LIMCH1-207ENST00000508466 ATP5EP2Q5VTU8 51 aa4.97□□□□□ -1.61
LIMCH1-207ENST00000508466 INSP01308 110 aa4.96□□□□□ -1.61
LIMCH1-207ENST00000508466 IGLV1-40P01703 118 aa4.96□□□□□ -1.61
LIMCH1-207ENST00000508466 C1orf158Q8N1D5 194 aa4.96□□□□□ -1.61
LIMCH1-207ENST00000508466 C1orf64Q8NEQ6 169 aa4.96□□□□□ -1.61
LIMCH1-207ENST00000508466 MUC7Q8TAX7 377 aa4.96□□□□□ -1.62
LIMCH1-207ENST00000508466 ITPR3Q14573 2671 aa4.96□□□□□ -1.62
LIMCH1-207ENST00000508466 A0A0G2JQZ4 141 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 A0A1W2PNN7 141 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 C11orf71Q6IPW1 123 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 UNQ6190/PRO20217Q6UXQ8 127 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 LINC00959A0A1B0GUT2 108 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 DEFB4AO15263 64 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 LINC00575Q6W349 94 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 LINC00612Q8N6U2 182 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 NOTCH2Q04721 2471 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 B4DSR2 109 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 DYNLRB2Q8TF09 96 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 MAP6D1Q9H9H5 199 aa4.95□□□□□ -1.62
LIMCH1-207ENST00000508466 TRAV22A0A0B4J277 110 aa4.94□□□□□ -1.62
LIMCH1-207ENST00000508466 K7EMT4 169 aa4.94□□□□□ -1.62
LIMCH1-207ENST00000508466 DEFB112Q30KQ8 113 aa4.94□□□□□ -1.62
LIMCH1-207ENST00000508466 SMIM29Q86T20 159 aa4.94□□□□□ -1.62
LIMCH1-207ENST00000508466 A6NDX4 124 aa4.94□□□□□ -1.62
LIMCH1-207ENST00000508466 ADORA2A-AS1P86434 159 aa4.94□□□□□ -1.62
LIMCH1-207ENST00000508466 STHQ8IWL8 128 aa4.94□□□□□ -1.62
LIMCH1-207ENST00000508466 TEP1Q99973 2627 aaKnown RBP4.94□□□□□ -1.62
LIMCH1-207ENST00000508466 TRRAPQ9Y4A5 3859 aa4.93□□□□□ -1.62
LIMCH1-207ENST00000508466 C11orf45Q8TAV5 145 aa4.93□□□□□ -1.62
LIMCH1-207ENST00000508466 TRBV10-3A0A0K0K1G6 114 aa4.93□□□□□ -1.62
LIMCH1-207ENST00000508466 PLAC8L1A1L4L8 177 aa4.93□□□□□ -1.62
LIMCH1-207ENST00000508466 TMEM89A2RUT3 159 aa4.93□□□□□ -1.62
LIMCH1-207ENST00000508466 ZNF561-AS1K7EIQ3 104 aa4.93□□□□□ -1.62
LIMCH1-207ENST00000508466 KLK9Q2XQG4 91 aa4.92□□□□□ -1.62
LIMCH1-207ENST00000508466 DEFB123Q8N688 67 aa4.92□□□□□ -1.62
LIMCH1-207ENST00000508466 FAM19A3Q7Z5A8 133 aa4.92□□□□□ -1.62
LIMCH1-207ENST00000508466 DOPEY1Q5JWR5 2465 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 IGHV4-30-2A0A087WSY4 118 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 TRBV6-8A0A0A6YYG3 113 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 A0A0J9YWU9 116 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 LY6G6DO95868 133 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 COL7A1Q02388 2944 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 DNAJC9-AS1A6NH13 148 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 CHKB-CPT1BH3BT56 60 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 ST20-AS1Q8NBB2 130 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 ANGP03950 147 aaKnown RBP4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 IGKV4-1P06312 121 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 RBM12B-AS1Q9P1G2 102 aa4.91□□□□□ -1.62
LIMCH1-207ENST00000508466 ODF3L2Q3SX64 289 aa4.9□□□□□ -1.62
LIMCH1-207ENST00000508466 OCR1Q9BZK8 76 aa4.9□□□□□ -1.62
LIMCH1-207ENST00000508466 hDV103S1A0JD37 113 aa4.9□□□□□ -1.63
LIMCH1-207ENST00000508466 NDUFC1O43677 76 aa4.9□□□□□ -1.63
LIMCH1-207ENST00000508466 MRPL55Q7Z7F7 128 aaKnown RBP4.89□□□□□ -1.63
LIMCH1-207ENST00000508466 LINC00167Q96N53 147 aa4.89□□□□□ -1.63
LIMCH1-207ENST00000508466 USP24Q9UPU5 2620 aa4.89□□□□□ -1.63
LIMCH1-207ENST00000508466 GYPEP15421 78 aa4.89□□□□□ -1.63
LIMCH1-207ENST00000508466 PRR15Q8IV56 129 aa4.89□□□□□ -1.63
LIMCH1-207ENST00000508466 CXCL6P80162 114 aa4.88□□□□□ -1.63
LIMCH1-207ENST00000508466 SYCNQ0VAF6 134 aa4.88□□□□□ -1.63
LIMCH1-207ENST00000508466 CHCHD10Q8WYQ3 142 aaPredicted RBP4.88□□□□□ -1.63
LIMCH1-207ENST00000508466 HTN3P15516 51 aa4.88□□□□□ -1.63
LIMCH1-207ENST00000508466 LOC110117498A0A087WWA1 95 aa4.87□□□□□ -1.63
LIMCH1-207ENST00000508466 HIGD2BQ4VC39 106 aa4.87□□□□□ -1.63
LIMCH1-207ENST00000508466 DIRC1Q969H9 104 aa4.87□□□□□ -1.63
LIMCH1-207ENST00000508466 CYSRT1A8MQ03 144 aa4.86□□□□□ -1.63
LIMCH1-207ENST00000508466 KIAA0087Q14695 138 aa4.86□□□□□ -1.63
LIMCH1-207ENST00000508466 DEFB114Q30KQ6 69 aa4.86□□□□□ -1.63
LIMCH1-207ENST00000508466 WFDC13Q8IUB5 93 aa4.86□□□□□ -1.63
LIMCH1-207ENST00000508466 PRR15LQ9BU68 103 aa4.86□□□□□ -1.63
LIMCH1-207ENST00000508466 HELZ2Q9BYK8 2649 aaKnown RBP4.86□□□□□ -1.63
LIMCH1-207ENST00000508466 Q6ZRU5 148 aa4.86□□□□□ -1.63
LIMCH1-207ENST00000508466 C16orf90A8MZG2 172 aa4.86□□□□□ -1.63
LIMCH1-207ENST00000508466 H3BUA1 57 aa4.86□□□□□ -1.63
LIMCH1-207ENST00000508466 FSHBP01225 129 aa4.86□□□□□ -1.63
LIMCH1-207ENST00000508466 FLNAP21333 2647 aaKnown RBP4.85□□□□□ -1.63
LIMCH1-207ENST00000508466 CD164Q04900 197 aa4.85□□□□□ -1.63
LIMCH1-207ENST00000508466 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms