RNA–Protein interactions for RNA: ENST00000377298.8

CLSTN1-202, Transcript of calsyntenin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN1, Length 5,221 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-202ENST00000377298 SPTSSBQ8NFR3 76 aa12.26□□□□□ -0.45
CLSTN1-202ENST00000377298 TRAV7A0A075B6U4 112 aa12.25□□□□□ -0.45
CLSTN1-202ENST00000377298 NBDYA0A0U1RRE5 68 aa12.25□□□□□ -0.45
CLSTN1-202ENST00000377298 CEP350Q5VT06 3117 aa12.25□□□□□ -0.45
CLSTN1-202ENST00000377298 HECTD1Q9ULT8 2610 aa12.24□□□□□ -0.45
CLSTN1-202ENST00000377298 LINC00588Q9Y4M8 146 aa12.24□□□□□ -0.45
CLSTN1-202ENST00000377298 LINC00167Q96N53 147 aa12.24□□□□□ -0.45
CLSTN1-202ENST00000377298 TRBV7-7A0A0K0K1E9 115 aa12.24□□□□□ -0.45
CLSTN1-202ENST00000377298 FAM229AH3BQW9 127 aa12.23□□□□□ -0.45
CLSTN1-202ENST00000377298 A0A0U1RQV1 116 aa12.22□□□□□ -0.45
CLSTN1-202ENST00000377298 PRR4Q16378 134 aa12.22□□□□□ -0.45
CLSTN1-202ENST00000377298 CSNK1G2-AS1Q8NCQ2 148 aa12.21□□□□□ -0.46
CLSTN1-202ENST00000377298 SVIPQ8NHG7 77 aa12.21□□□□□ -0.46
CLSTN1-202ENST00000377298 PRRC2CQ9Y520 2896 aaKnown RBP12.2□□□□□ -0.46
CLSTN1-202ENST00000377298 LINC00846Q9NV44 126 aa12.2□□□□□ -0.46
CLSTN1-202ENST00000377298 SMIM26A0A096LP01 95 aa12.2□□□□□ -0.46
CLSTN1-202ENST00000377298 V9GYY9 64 aa12.2□□□□□ -0.46
CLSTN1-202ENST00000377298 Q8N3U1 123 aa12.19□□□□□ -0.46
CLSTN1-202ENST00000377298 TRBV7-6A0A0J9YX20 115 aa12.19□□□□□ -0.46
CLSTN1-202ENST00000377298 C16orf90A8MZG2 172 aa12.18□□□□□ -0.46
CLSTN1-202ENST00000377298 LINC01547P58512 204 aaPredicted RBP12.18□□□□□ -0.46
CLSTN1-202ENST00000377298 DNAH10OSP0CZ25 163 aa12.17□□□□□ -0.46
CLSTN1-202ENST00000377298 RETNLBQ9BQ08 111 aa12.17□□□□□ -0.46
CLSTN1-202ENST00000377298 GVQW2A0A096LPI5 108 aaPredicted RBP12.16□□□□□ -0.46
CLSTN1-202ENST00000377298 LINC00208Q96KT6 92 aa12.16□□□□□ -0.46
CLSTN1-202ENST00000377298 KIAA0087Q14695 138 aa12.16□□□□□ -0.46
CLSTN1-202ENST00000377298 SOSTDC1Q6X4U4 206 aa12.15□□□□□ -0.46
CLSTN1-202ENST00000377298 RTL8CO15255 209 aa12.14□□□□□ -0.47
CLSTN1-202ENST00000377298 C19orf73Q9NVV2 129 aa12.14□□□□□ -0.47
CLSTN1-202ENST00000377298 KRTAP1-3Q8IUG1 177 aa12.13□□□□□ -0.47
CLSTN1-202ENST00000377298 K7EIL1 84 aa12.13□□□□□ -0.47
CLSTN1-202ENST00000377298 KRTAP10-11P60412 298 aa12.12□□□□□ -0.47
CLSTN1-202ENST00000377298 ELOF1P60002 83 aaKnown RBP12.12□□□□□ -0.47
CLSTN1-202ENST00000377298 DEFB116Q30KQ4 102 aa12.11□□□□□ -0.47
CLSTN1-202ENST00000377298 KRTAP10-3P60369 221 aa12.11□□□□□ -0.47
CLSTN1-202ENST00000377298 SPACA4Q8TDM5 124 aa12.09□□□□□ -0.47
CLSTN1-202ENST00000377298 PHF5AQ7RTV0 110 aaKnown RBP12.08□□□□□ -0.48
CLSTN1-202ENST00000377298 CXCL6P80162 114 aa12.08□□□□□ -0.48
CLSTN1-202ENST00000377298 Q6ZRX8 168 aa12.08□□□□□ -0.48
CLSTN1-202ENST00000377298 SPATA3Q8NHX4 192 aa12.08□□□□□ -0.48
CLSTN1-202ENST00000377298 HCG22E2RYF7 251 aa12.07□□□□□ -0.48
CLSTN1-202ENST00000377298 MOBPQ13875 183 aa12.07□□□□□ -0.48
CLSTN1-202ENST00000377298 Q6ZRP5 223 aa12.06□□□□□ -0.48
CLSTN1-202ENST00000377298 A0A1B0GW54 56 aa12.06□□□□□ -0.48
CLSTN1-202ENST00000377298 GIG44P09565 113 aaPredicted RBP12.06□□□□□ -0.48
CLSTN1-202ENST00000377298 CHD7Q9P2D1 2997 aa12.06□□□□□ -0.48
CLSTN1-202ENST00000377298 CRYGAP11844 174 aa12.05□□□□□ -0.48
CLSTN1-202ENST00000377298 KRTAP1-1Q07627 177 aa12.05□□□□□ -0.48
CLSTN1-202ENST00000377298 FAM218AQ96MZ4 157 aa12.04□□□□□ -0.48
CLSTN1-202ENST00000377298 A6NED7 52 aa12.02□□□□□ -0.48
CLSTN1-202ENST00000377298 LINC00612Q8N6U2 182 aa12.02□□□□□ -0.48
CLSTN1-202ENST00000377298 H0Y9P7 68 aa12.02□□□□□ -0.49
CLSTN1-202ENST00000377298 PCOTHQ58A44 107 aa12.02□□□□□ -0.49
CLSTN1-202ENST00000377298 EPM2AB3EWF7 344 aa12.01□□□□□ -0.49
CLSTN1-202ENST00000377298 SPINK1P00995 79 aa12.01□□□□□ -0.49
CLSTN1-202ENST00000377298 C1orf195Q5TG92 126 aa12□□□□□ -0.49
CLSTN1-202ENST00000377298 MGAM2Q2M2H8 2515 aa12□□□□□ -0.49
CLSTN1-202ENST00000377298 PLA2G1BP04054 148 aaKnown RBP11.99□□□□□ -0.49
CLSTN1-202ENST00000377298 TMEM254Q8TBM7 123 aa11.99□□□□□ -0.49
CLSTN1-202ENST00000377298 LITAFQ99732 161 aa11.99□□□□□ -0.49
CLSTN1-202ENST00000377298 PRR34Q9NV39 138 aa11.99□□□□□ -0.49
CLSTN1-202ENST00000377298 TYMSOSQ8TAI1 123 aa11.99□□□□□ -0.49
CLSTN1-202ENST00000377298 VPREB1P12018 145 aa11.98□□□□□ -0.49
CLSTN1-202ENST00000377298 BCE1O60756 84 aa11.98□□□□□ -0.49
CLSTN1-202ENST00000377298 J3QL48 77 aa11.97□□□□□ -0.49
CLSTN1-202ENST00000377298 Q8NBF4 154 aa11.97□□□□□ -0.49
CLSTN1-202ENST00000377298 CHTF8P0CG12 524 aa11.97□□□□□ -0.49
CLSTN1-202ENST00000377298 IGKV2D-30A0A075B6S6 120 aa11.96□□□□□ -0.49
CLSTN1-202ENST00000377298 IGKV2-30P06310 120 aa11.96□□□□□ -0.49
CLSTN1-202ENST00000377298 TM2D3Q9BRN9 247 aa11.96□□□□□ -0.5
CLSTN1-202ENST00000377298 LINC00476Q8WZB0 136 aa11.95□□□□□ -0.5
CLSTN1-202ENST00000377298 IGLV6-57P01721 117 aa11.95□□□□□ -0.5
CLSTN1-202ENST00000377298 LOC110117498A0A087WWA1 95 aa11.94□□□□□ -0.5
CLSTN1-202ENST00000377298 USP24Q9UPU5 2620 aa11.93□□□□□ -0.5
CLSTN1-202ENST00000377298 HELZ2Q9BYK8 2649 aaKnown RBP11.93□□□□□ -0.5
CLSTN1-202ENST00000377298 PCNTO95613 3336 aa11.93□□□□□ -0.5
CLSTN1-202ENST00000377298 CHD9Q3L8U1 2897 aa11.93□□□□□ -0.5
CLSTN1-202ENST00000377298 Q6ZQT0 140 aa11.92□□□□□ -0.5
CLSTN1-202ENST00000377298 hDV103S1A0JD37 113 aa11.92□□□□□ -0.5
CLSTN1-202ENST00000377298 ST20-AS1Q8NBB2 130 aa11.91□□□□□ -0.5
CLSTN1-202ENST00000377298 RPS28P62857 69 aaKnown RBP11.91□□□□□ -0.5
CLSTN1-202ENST00000377298 FLNAP21333 2647 aaKnown RBP11.9□□□□□ -0.5
CLSTN1-202ENST00000377298 RPL37AP61513 92 aaKnown RBP11.9□□□□□ -0.5
CLSTN1-202ENST00000377298 TP53AIP1Q9HCN2 124 aa11.9□□□□□ -0.5
CLSTN1-202ENST00000377298 SMIM29Q86T20 159 aa11.88□□□□□ -0.51
CLSTN1-202ENST00000377298 C1orf64Q8NEQ6 169 aa11.88□□□□□ -0.51
CLSTN1-202ENST00000377298 FAM168BA1KXE4 195 aa11.88□□□□□ -0.51
CLSTN1-202ENST00000377298 BPTFQ12830 3046 aa11.87□□□□□ -0.51
CLSTN1-202ENST00000377298 IGLV1-50A0A075B6I6 118 aa11.87□□□□□ -0.51
CLSTN1-202ENST00000377298 SERTAD4-AS1Q5TG53 156 aa11.87□□□□□ -0.51
CLSTN1-202ENST00000377298 KCNQ1DNQ9H478 68 aa11.87□□□□□ -0.51
CLSTN1-202ENST00000377298 C15orf56Q8N910 161 aa11.87□□□□□ -0.51
CLSTN1-202ENST00000377298 ITPR3Q14573 2671 aa11.85□□□□□ -0.51
CLSTN1-202ENST00000377298 HTTP42858 3142 aa11.82□□□□□ -0.52
CLSTN1-202ENST00000377298 TRBV7-4A0A0J9YYF1 115 aa11.82□□□□□ -0.52
CLSTN1-202ENST00000377298 PSPHP1O15172 72 aa11.82□□□□□ -0.52
CLSTN1-202ENST00000377298 PMAIP1Q13794 54 aa11.81□□□□□ -0.52
CLSTN1-202ENST00000377298 A0A087WTM6 91 aa11.8□□□□□ -0.52
CLSTN1-202ENST00000377298 C7orf65Q6ZTY9 151 aa11.8□□□□□ -0.52
CLSTN1-202ENST00000377298 EIF4EBP3O60516 100 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms