RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 LOC105371267A0A1B0GV96 52 aa5.63□□□□□ -1.51
HMGB1-203ENST00000341423 LINC00575Q6W349 94 aa5.62□□□□□ -1.51
HMGB1-203ENST00000341423 C3orf22Q8N5N4 141 aa5.62□□□□□ -1.51
HMGB1-203ENST00000341423 FAM30AQ9NZY2 134 aa5.62□□□□□ -1.51
HMGB1-203ENST00000341423 CLEC2BQ92478 149 aa5.62□□□□□ -1.51
HMGB1-203ENST00000341423 PRR26Q8N8Z3 221 aa5.62□□□□□ -1.51
HMGB1-203ENST00000341423 ACYP1P07311 99 aa5.61□□□□□ -1.51
HMGB1-203ENST00000341423 PRR15LQ9BU68 103 aa5.6□□□□□ -1.51
HMGB1-203ENST00000341423 TANC2Q9HCD6 1990 aa5.6□□□□□ -1.51
HMGB1-203ENST00000341423 SRSF3P84103 164 aaKnown RBP5.6□□□□□ -1.51
HMGB1-203ENST00000341423 C11orf72Q8NBR9 251 aa5.6□□□□□ -1.51
HMGB1-203ENST00000341423 IGLV6-57P01721 117 aa5.6□□□□□ -1.51
HMGB1-203ENST00000341423 NDUFV3P56181 108 aaKnown RBP5.59□□□□□ -1.51
HMGB1-203ENST00000341423 MAP1AP78559 2803 aaPredicted RBP5.59□□□□□ -1.51
HMGB1-203ENST00000341423 ZNF22P17026 224 aaPredicted RBP5.59□□□□□ -1.51
HMGB1-203ENST00000341423 A0A0C4DFX4 3053 aa5.59□□□□□ -1.51
HMGB1-203ENST00000341423 BTCP35070 178 aa5.59□□□□□ -1.52
HMGB1-203ENST00000341423 C10orf91Q5T1B1 145 aa5.58□□□□□ -1.52
HMGB1-203ENST00000341423 IGLV8-61A0A075B6I0 122 aa5.58□□□□□ -1.52
HMGB1-203ENST00000341423 E9PLD3 99 aa5.57□□□□□ -1.52
HMGB1-203ENST00000341423 LINC00694P0DN24 101 aa5.57□□□□□ -1.52
HMGB1-203ENST00000341423 LINC00308Q8TCZ7 52 aa5.57□□□□□ -1.52
HMGB1-203ENST00000341423 PCP4P48539 62 aa5.57□□□□□ -1.52
HMGB1-203ENST00000341423 POLR2KP53803 58 aaKnown RBP5.56□□□□□ -1.52
HMGB1-203ENST00000341423 NSD1Q96L73 2696 aaPredicted RBP5.56□□□□□ -1.52
HMGB1-203ENST00000341423 REV3LO60673 3130 aa5.56□□□□□ -1.52
HMGB1-203ENST00000341423 HCFC1P51610 2035 aa5.56□□□□□ -1.52
HMGB1-203ENST00000341423 ENHOQ6UWT2 76 aa5.56□□□□□ -1.52
HMGB1-203ENST00000341423 DNAH12Q6ZR08 3092 aa5.56□□□□□ -1.52
HMGB1-203ENST00000341423 LINC00612Q8N6U2 182 aa5.55□□□□□ -1.52
HMGB1-203ENST00000341423 CARHSP1Q9Y2V2 147 aaKnown RBP5.55□□□□□ -1.52
HMGB1-203ENST00000341423 C11orf21Q9P2W6 132 aa5.54□□□□□ -1.52
HMGB1-203ENST00000341423 ACYP2P14621 99 aa5.54□□□□□ -1.52
HMGB1-203ENST00000341423 K7EN84 100 aa5.54□□□□□ -1.52
HMGB1-203ENST00000341423 UBR5O95071 2799 aaPredicted RBP5.54□□□□□ -1.52
HMGB1-203ENST00000341423 TEN1Q86WV5 123 aa5.54□□□□□ -1.52
HMGB1-203ENST00000341423 CNBPP62633 177 aaKnown RBP5.53□□□□□ -1.52
HMGB1-203ENST00000341423 C8orf87E5RJ46 101 aa5.53□□□□□ -1.52
HMGB1-203ENST00000341423 C6orf48Q9UBA6 75 aa5.53□□□□□ -1.52
HMGB1-203ENST00000341423 BRCA2P51587 3418 aa5.53□□□□□ -1.52
HMGB1-203ENST00000341423 PPDPFLQ8WWR9 84 aa5.52□□□□□ -1.53
HMGB1-203ENST00000341423 C7orf65Q6ZTY9 151 aa5.51□□□□□ -1.53
HMGB1-203ENST00000341423 CSNK1G2-AS1Q8NCQ2 148 aa5.51□□□□□ -1.53
HMGB1-203ENST00000341423 ST20-AS1Q8NBB2 130 aa5.51□□□□□ -1.53
HMGB1-203ENST00000341423 OBSCN-AS1Q96MR7 158 aa5.51□□□□□ -1.53
HMGB1-203ENST00000341423 NDUFC2O95298 119 aa5.51□□□□□ -1.53
HMGB1-203ENST00000341423 SOSTDC1Q6X4U4 206 aa5.51□□□□□ -1.53
HMGB1-203ENST00000341423 TIMM17BO60830 172 aa5.5□□□□□ -1.53
HMGB1-203ENST00000341423 CHD9Q3L8U1 2897 aa5.5□□□□□ -1.53
HMGB1-203ENST00000341423 SMIM1B2RUZ4 78 aa5.5□□□□□ -1.53
HMGB1-203ENST00000341423 ADCYAP1P18509 176 aa5.5□□□□□ -1.53
HMGB1-203ENST00000341423 TNRC6BQ9UPQ9 1833 aaKnown RBP5.49□□□□□ -1.53
HMGB1-203ENST00000341423 AKAP13Q12802 2813 aa5.48□□□□□ -1.53
HMGB1-203ENST00000341423 SMIM20Q8N5G0 67 aa5.48□□□□□ -1.53
HMGB1-203ENST00000341423 MKI67P46013 3256 aaKnown RBP5.48□□□□□ -1.53
HMGB1-203ENST00000341423 SVIPQ8NHG7 77 aa5.48□□□□□ -1.53
HMGB1-203ENST00000341423 KRTAP10-1P60331 282 aa5.48□□□□□ -1.53
HMGB1-203ENST00000341423 FAM229BQ4G0N7 80 aa5.48□□□□□ -1.53
HMGB1-203ENST00000341423 PRR3P79522 188 aaKnown RBP5.47□□□□□ -1.53
HMGB1-203ENST00000341423 KMT2BQ9UMN6 2715 aaPredicted RBP5.47□□□□□ -1.53
HMGB1-203ENST00000341423 NDUFC1O43677 76 aa5.47□□□□□ -1.53
HMGB1-203ENST00000341423 HIST3H2BBQ8N257 126 aa5.47□□□□□ -1.53
HMGB1-203ENST00000341423 CRIP1P50238 77 aa5.47□□□□□ -1.53
HMGB1-203ENST00000341423 MRPS12O15235 138 aaKnown RBP5.46□□□□□ -1.53
HMGB1-203ENST00000341423 HCG22E2RYF7 251 aa5.46□□□□□ -1.54
HMGB1-203ENST00000341423 ATOX1O00244 68 aa5.46□□□□□ -1.54
HMGB1-203ENST00000341423 Q8N3U1 123 aa5.46□□□□□ -1.54
HMGB1-203ENST00000341423 FP248Q71RG6 208 aaPredicted RBP5.46□□□□□ -1.54
HMGB1-203ENST00000341423 COX8AP10176 69 aa5.45□□□□□ -1.54
HMGB1-203ENST00000341423 Q6ZRX8 168 aa5.44□□□□□ -1.54
HMGB1-203ENST00000341423 LINC01554Q52M75 96 aa5.44□□□□□ -1.54
HMGB1-203ENST00000341423 ITPR2Q14571 2701 aa5.44□□□□□ -1.54
HMGB1-203ENST00000341423 RANBP2P49792 3224 aaKnown RBP5.44□□□□□ -1.54
HMGB1-203ENST00000341423 SMIM11BQ8TCY0 68 aa5.44□□□□□ -1.54
HMGB1-203ENST00000341423 LAMA3Q16787 3333 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 IGKV3D-7A0A0C4DH55 119 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 PLAC4Q8WY50 150 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST1H2BKO60814 126 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST1H2BJP06899 126 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST1H2BOP23527 126 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST1H2BBP33778 126 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST1H2BDP58876 126 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 KRTAP10-2P60368 255 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST1H2BCP62807 126 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 UBE2V1Q13404 147 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST2H2BEQ16778 126 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST1H2BHQ93079 126 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST1H2BNQ99877 126 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 HIST1H2BMQ99879 126 aa5.43□□□□□ -1.54
HMGB1-203ENST00000341423 A0A0B4J2C4 111 aa5.42□□□□□ -1.54
HMGB1-203ENST00000341423 TRBV7-6A0A0J9YX20 115 aa5.42□□□□□ -1.54
HMGB1-203ENST00000341423 DEFB116Q30KQ4 102 aa5.42□□□□□ -1.54
HMGB1-203ENST00000341423 NTM-AS1Q6ZSK4 140 aa5.41□□□□□ -1.54
HMGB1-203ENST00000341423 HIVEP1P15822 2718 aa5.41□□□□□ -1.54
HMGB1-203ENST00000341423 PCSK5Q92824 1860 aa5.41□□□□□ -1.54
HMGB1-203ENST00000341423 H3BT86 120 aa5.41□□□□□ -1.54
HMGB1-203ENST00000341423 ANAPC11Q9NYG5 84 aa5.41□□□□□ -1.54
HMGB1-203ENST00000341423 PLAC8Q9NZF1 115 aa5.41□□□□□ -1.54
HMGB1-203ENST00000341423 HRES1P13985 223 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms